Wall clock time and date at job start Mon Mar 30 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.52994 * 109.47136 * 120.00709 * 2 1 3 5 5 C 1.50696 * 109.47121 * 294.99753 * 4 2 1 6 6 H 1.07995 * 120.00083 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99589 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00196 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47228 * 60.00012 * 9 7 5 11 11 H 1.48499 * 109.47339 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47110 * 299.99945 * 9 7 5 13 13 C 1.53009 * 109.46671 * 240.00625 * 2 1 3 14 14 N 1.46896 * 109.47120 * 63.71606 * 13 2 1 15 15 C 1.46849 * 111.00148 * 75.81525 * 14 13 2 16 16 C 1.53032 * 109.52395 * 185.84036 * 15 14 13 17 17 C 1.53116 * 109.27681 * 300.81706 * 16 15 14 18 18 C 1.50701 * 109.52366 * 177.56035 * 17 16 15 19 19 C 1.39872 * 126.04085 * 300.12812 * 18 17 16 20 20 N 1.30843 * 108.19922 * 179.73751 * 19 18 17 21 21 N 1.40081 * 108.20704 * 0.40717 * 20 19 18 22 22 H 0.97000 * 126.03438 * 179.85286 * 21 20 19 23 23 C 1.34947 * 107.92531 * 359.58729 * 21 20 19 24 24 C 1.53114 * 109.21518 * 57.62523 * 17 16 15 25 25 C 1.46847 * 110.99931 * 200.02176 * 14 13 2 26 26 H 1.09004 * 109.47403 * 185.40698 * 1 2 3 27 27 H 1.09003 * 109.46585 * 305.40718 * 1 2 3 28 28 H 1.09002 * 109.47417 * 65.40418 * 1 2 3 29 29 H 1.08998 * 109.47173 * 54.99811 * 4 2 1 30 30 H 1.09003 * 109.46991 * 174.99531 * 4 2 1 31 31 H 0.97005 * 120.00212 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47137 * 303.71573 * 13 2 1 33 33 H 1.09003 * 109.46505 * 183.71756 * 13 2 1 34 34 H 1.08997 * 109.46530 * 65.81462 * 15 14 13 35 35 H 1.09008 * 109.45707 * 305.85054 * 15 14 13 36 36 H 1.08998 * 109.50511 * 180.87399 * 16 15 14 37 37 H 1.09001 * 109.53874 * 60.77698 * 16 15 14 38 38 H 1.08999 * 109.52131 * 297.68285 * 17 16 15 39 39 H 1.07998 * 125.89815 * 359.97438 * 19 18 17 40 40 H 1.08006 * 126.12693 * 180.27000 * 23 21 20 41 41 H 1.08997 * 109.50471 * 62.31339 * 24 17 16 42 42 H 1.08997 * 109.50814 * 182.43894 * 24 17 16 43 43 H 1.08999 * 109.46004 * 294.17518 * 25 14 13 44 44 H 1.08996 * 109.46545 * 54.15364 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0568 2.4765 6 1 1.0807 0.9743 2.3757 7 6 1.9933 -0.4021 3.7282 8 7 2.6764 -1.5192 3.8509 9 14 1.4998 0.5628 5.2495 10 1 0.0198 0.6695 5.3096 11 1 1.9947 -0.1374 6.4620 12 1 2.0920 1.9232 5.1866 13 6 2.0399 -0.7212 -1.2494 14 7 1.6249 0.0213 -2.4470 15 6 2.4474 1.2236 -2.6322 16 6 1.8962 2.0456 -3.7994 17 6 1.9127 1.1925 -5.0708 18 6 1.3154 1.9763 -6.2110 19 6 0.0173 2.4946 -6.2625 20 7 -0.1299 3.1152 -7.4049 21 7 1.0685 3.0032 -8.1215 22 1 1.2424 3.3681 -9.0032 23 6 1.9403 2.3030 -7.3660 24 6 1.0897 -0.0772 -4.8363 25 6 1.6634 -0.8369 -3.6380 26 1 -0.3634 -1.0231 0.0968 27 1 -0.3632 0.5954 0.8377 28 1 -0.3634 0.4277 -0.9344 29 1 1.6053 -1.7199 1.2949 30 1 3.1263 -0.7997 1.2054 31 1 2.9237 -1.8423 4.7315 32 1 1.6232 -1.7278 -1.2834 33 1 3.1279 -0.7792 -1.2167 34 1 3.4751 0.9310 -2.8474 35 1 2.4237 1.8235 -1.7224 36 1 2.5162 2.9300 -3.9465 37 1 0.8733 2.3509 -3.5793 38 1 2.9399 0.9211 -5.3140 39 1 -0.7325 2.4021 -5.4907 40 1 2.9551 2.0492 -7.6348 41 1 0.0536 0.1931 -4.6325 42 1 1.1338 -0.7086 -5.7237 43 1 2.6947 -1.1199 -3.8485 44 1 1.0701 -1.7336 -3.4588 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876632947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:56 Heat of formation + Delta-G solvation = 31.575782 kcal Electronic energy + Delta-G solvation = -21477.887331 eV Core-core repulsion = 18429.764063 eV Total energy + Delta-G solvation = -3048.123267 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.10941 -39.95819 -37.18164 -35.00143 -33.62148 -32.13199 -31.65026 -30.36081 -28.74898 -27.05253 -25.24159 -23.96754 -23.49386 -22.96980 -21.10461 -20.42708 -20.36234 -18.51894 -18.41062 -16.76868 -16.30473 -16.06234 -15.57469 -15.46632 -15.39173 -15.05671 -14.82800 -14.45316 -14.34071 -14.09871 -13.78395 -13.42092 -13.22856 -13.10848 -12.78830 -12.73152 -12.47591 -12.22474 -12.18348 -11.99824 -11.91289 -11.54678 -11.32111 -11.26426 -11.17622 -10.99716 -10.75636 -10.52299 -10.50016 -9.30462 -9.08463 -8.15014 -6.23854 1.06015 1.41218 1.44084 1.51665 1.90586 2.15717 2.43909 3.08187 3.18189 3.77817 3.98797 4.02219 4.16007 4.27736 4.33273 4.45322 4.50942 4.57793 4.59439 4.62087 4.74463 4.76703 4.86597 4.90519 4.93072 5.03653 5.06855 5.12215 5.21105 5.22656 5.32642 5.37354 5.38590 5.53474 5.54955 5.60691 5.67163 5.77885 5.86033 5.93065 6.23152 6.36627 6.40379 6.53096 6.79468 6.92147 7.44141 8.96877 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038719 B = 0.002997 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.990343 B = 9340.128633 C = 9616.645945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.068 4.068 3 H 0.049 0.951 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.073 3.927 14 N -0.536 5.536 15 C 0.054 3.946 16 C -0.096 4.096 17 C 0.000 4.000 18 C -0.239 4.239 19 C 0.051 3.949 20 N -0.337 5.337 21 N -0.475 5.475 22 H 0.450 0.550 23 C 0.069 3.931 24 C -0.096 4.096 25 C 0.054 3.946 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.068 0.932 29 H -0.010 1.010 30 H -0.016 1.016 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.030 0.970 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.184 0.816 40 H 0.209 0.791 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 6.527 -24.931 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.055 4.055 14 N -0.261 5.261 15 C -0.074 4.074 16 C -0.134 4.134 17 C -0.020 4.020 18 C -0.250 4.250 19 C -0.135 4.135 20 N -0.160 5.160 21 N -0.185 5.185 22 H 0.296 0.704 23 C -0.079 4.079 24 C -0.134 4.134 25 C -0.074 4.074 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.008 0.992 30 H 0.002 0.998 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.201 0.799 40 H 0.226 0.774 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.534 7.235 -25.493 26.545 hybrid contribution 1.433 -0.457 1.306 1.992 sum -0.101 6.778 -24.187 25.119 Atomic orbital electron populations 1.21446 0.94809 1.00037 1.00448 1.20963 0.96578 0.98252 0.92912 0.93211 1.19023 0.93969 0.94658 0.92832 1.21614 1.34338 1.08526 0.92135 0.92261 1.25941 0.95296 0.96113 1.02595 1.70095 1.40346 1.22947 1.24288 0.85583 0.78936 0.78802 0.78240 1.19273 1.20994 1.19268 1.22007 0.96659 0.96904 0.89966 1.61885 1.54325 1.07328 1.02541 1.22137 0.94142 0.92017 0.99109 1.21538 1.01673 0.97379 0.92790 1.19391 0.98705 0.93124 0.90742 1.20153 0.95194 1.10959 0.98689 1.23986 0.97863 0.96208 0.95463 1.77280 1.05482 1.25396 1.07842 1.46329 1.09356 1.44532 1.18235 0.70406 1.22933 0.97770 0.95521 0.91697 1.21548 0.99794 0.95889 0.96162 1.22170 0.99345 0.95810 0.90086 0.94841 0.94749 0.91312 0.99200 0.99754 0.92969 0.91701 0.96177 0.95198 0.92081 0.91140 0.91776 0.90178 0.79894 0.77439 0.91708 0.90607 0.95044 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.31 8.86 71.98 0.64 -3.67 16 2 C -0.07 -2.85 2.39 -10.79 -0.03 -2.87 16 3 H 0.05 2.12 6.73 -2.39 -0.02 2.10 16 4 C 0.03 1.75 4.45 29.84 0.13 1.88 16 5 C -0.53 -30.35 8.47 25.60 0.22 -30.14 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -57.86 13.29 21.45 0.28 -57.58 16 9 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 C 0.07 2.53 4.41 86.31 0.38 2.91 16 14 N -0.54 -15.00 3.89 -896.33 -3.49 -18.49 16 15 C 0.05 1.38 5.29 86.32 0.46 1.84 16 16 C -0.10 -1.93 5.29 30.64 0.16 -1.77 16 17 C 0.00 0.00 2.61 -11.46 -0.03 -0.03 16 18 C -0.24 -3.89 4.81 -20.14 -0.10 -3.98 16 19 C 0.05 0.98 11.36 85.24 0.97 1.95 16 20 N -0.34 -6.99 12.70 -57.02 -0.72 -7.71 16 21 N -0.48 -6.43 7.36 -57.59 -0.42 -6.86 16 22 H 0.45 3.15 8.96 -213.33 -1.91 1.24 16 23 C 0.07 0.82 11.88 83.54 0.99 1.81 16 24 C -0.10 -1.74 5.29 30.65 0.16 -1.58 16 25 C 0.05 1.21 5.42 86.33 0.47 1.68 16 26 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.03 1.42 7.12 -2.39 -0.02 1.40 16 28 H 0.07 2.35 7.56 -2.39 -0.02 2.34 16 29 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 32 H 0.06 2.26 7.79 -2.39 -0.02 2.24 16 33 H 0.02 0.73 8.00 -2.39 -0.02 0.71 16 34 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 1.79 6.67 -2.38 -0.02 1.77 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.40 7.96 -2.39 -0.02 1.39 16 38 H 0.08 1.19 8.11 -2.39 -0.02 1.17 16 39 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.21 0.87 8.06 -2.91 -0.02 0.84 16 41 H 0.06 1.29 7.96 -2.39 -0.02 1.27 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 1.63 7.93 -2.39 -0.02 1.61 16 Total: -1.00 -69.35 347.36 1.61 -67.73 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -0.95 Total: 7.48 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 4.89 Total: -31.64 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -4.35 Total: -90.64 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -69.35 1.61 -67.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876632947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.306 kcal (2) G-P(sol) polarization free energy of solvation -69.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds