Wall clock time and date at job start Mon Mar 30 2020 02:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.49177 * 111.00179 * 2 1 4 4 C 1.56247 * 106.92846 * 214.24365 * 3 2 1 5 5 C 1.52819 * 103.35760 * 357.97111 * 4 3 2 6 6 H 1.08998 * 110.26607 * 270.31457 * 5 4 3 7 7 C 1.51654 * 116.57621 * 143.64624 * 5 4 3 8 8 N 1.47681 * 107.08788 * 182.32010 * 7 5 4 9 9 C 1.46889 * 111.00582 * 184.96775 * 8 7 5 10 10 C 1.52996 * 109.47347 * 166.71989 * 9 8 7 11 11 H 1.09007 * 109.47358 * 56.84191 * 10 9 8 12 12 C 1.47201 * 109.47309 * 296.84294 * 10 9 8 13 13 N 7.06422 * 137.12918 * 206.68283 * 2 1 3 14 14 C 1.53002 * 109.47652 * 176.84045 * 10 9 8 15 15 C 1.50702 * 109.47421 * 184.99988 * 14 10 9 16 16 H 1.07994 * 120.00030 * 359.97438 * 15 14 10 17 17 C 1.37876 * 119.99492 * 180.02562 * 15 14 10 18 18 N 1.31517 * 119.99299 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00407 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47207 * 90.00534 * 19 17 15 21 21 H 1.48502 * 109.47158 * 210.00169 * 19 17 15 22 22 H 1.48497 * 109.47581 * 330.00277 * 19 17 15 23 23 C 1.46348 * 113.64292 * 59.01240 * 8 7 5 24 24 C 1.53849 * 111.77021 * 304.38069 * 23 8 7 25 25 C 1.46518 * 111.00035 * 244.65433 * 2 1 3 26 26 H 1.08998 * 110.27037 * 46.39707 * 25 2 1 27 27 H 1.09002 * 109.47386 * 175.34186 * 1 2 3 28 28 H 1.08996 * 109.47140 * 295.34735 * 1 2 3 29 29 H 1.09002 * 109.47288 * 55.34696 * 1 2 3 30 30 H 1.09006 * 109.98805 * 333.95932 * 3 2 1 31 31 H 1.09000 * 109.99138 * 95.23558 * 3 2 1 32 32 H 1.08989 * 110.91161 * 239.48777 * 4 3 2 33 33 H 1.09001 * 110.67097 * 116.33568 * 4 3 2 34 34 H 1.09005 * 109.93532 * 62.92911 * 7 5 4 35 35 H 1.09001 * 110.00597 * 301.75132 * 7 5 4 36 36 H 1.09002 * 109.47298 * 286.71670 * 9 8 7 37 37 H 1.09004 * 109.47401 * 46.72052 * 9 8 7 38 38 H 1.09001 * 109.46699 * 305.00304 * 14 10 9 39 39 H 1.09007 * 109.46849 * 64.99613 * 14 10 9 40 40 H 0.97004 * 119.99965 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.01742 * 183.79481 * 23 8 7 42 42 H 1.08999 * 108.95847 * 64.92838 * 23 8 7 43 43 H 1.08998 * 109.94637 * 175.73934 * 24 23 8 44 44 H 1.08996 * 109.94896 * 296.91181 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0036 1.3927 0.0000 4 6 3.3202 1.3746 -0.8411 5 6 3.4698 -0.0954 -1.2311 6 1 4.0431 -0.6305 -0.4741 7 6 4.0315 -0.3774 -2.6113 8 7 4.0323 -1.8436 -2.7882 9 6 4.6712 -2.2207 -4.0560 10 6 4.9527 -3.7245 -4.0579 11 1 4.0229 -4.2685 -3.8910 12 6 5.9085 -4.0461 -2.9857 13 7 6.6463 -4.2943 -2.1582 14 6 5.5457 -4.1308 -5.4086 15 6 5.7087 -5.6282 -5.4556 16 1 5.4188 -6.2299 -4.6070 17 6 6.2290 -6.2299 -6.5818 18 7 6.3708 -7.5367 -6.6231 19 14 6.7311 -5.1891 -8.0494 20 1 8.1544 -4.7890 -7.9088 21 1 6.5593 -5.9765 -9.2967 22 1 5.8791 -3.9743 -8.1096 23 6 2.7058 -2.4500 -2.6687 24 6 2.0361 -2.0981 -1.3290 25 6 1.9941 -0.5856 -1.2362 26 1 1.4711 -0.1755 -2.1001 27 1 -0.3634 -1.0243 -0.0835 28 1 -0.3633 0.4399 0.9287 29 1 -0.3634 0.5843 -0.8454 30 1 1.2779 2.0704 -0.4497 31 1 2.2244 1.7071 1.0200 32 1 4.1699 1.6994 -0.2408 33 1 3.2178 1.9975 -1.7297 34 1 5.0492 0.0061 -2.6839 35 1 3.4041 0.0881 -3.3715 36 1 4.0073 -1.9743 -4.8848 37 1 5.6085 -1.6754 -4.1669 38 1 4.8778 -3.8126 -6.2090 39 1 6.5182 -3.6552 -5.5362 40 1 6.7365 -7.9601 -7.4155 41 1 2.8022 -3.5331 -2.7439 42 1 2.0779 -2.0919 -3.4846 43 1 1.0235 -2.5004 -1.3025 44 1 2.6196 -2.5052 -0.5033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879569519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:03 Heat of formation + Delta-G solvation = 32.018066 kcal Electronic energy + Delta-G solvation = -21908.310548 eV Core-core repulsion = 18860.206460 eV Total energy + Delta-G solvation = -3048.104088 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43099 -37.82017 -35.83929 -33.80706 -32.88334 -32.40856 -30.99925 -28.91757 -27.19881 -25.80623 -23.81012 -23.24861 -21.44054 -21.32008 -20.65397 -20.02132 -16.87393 -16.71324 -15.92265 -15.77992 -15.31247 -15.02828 -14.85275 -14.32795 -14.15581 -13.75860 -13.52834 -13.21640 -13.11902 -12.78302 -12.45545 -12.39117 -12.24208 -11.99415 -11.75264 -11.56625 -11.40043 -11.31255 -11.28144 -11.09929 -10.99248 -10.77926 -10.66763 -10.26994 -10.10741 -9.94415 -9.73738 -9.31615 -8.72492 -8.61384 -8.18073 -6.10281 -4.10833 3.26790 3.34055 3.34724 3.61356 3.73464 3.80476 3.88912 4.24326 4.38330 4.50370 4.69614 4.84087 4.92172 5.01393 5.05103 5.11501 5.18111 5.23487 5.24667 5.28861 5.36058 5.45412 5.51102 5.56568 5.59118 5.62806 5.65762 5.75221 5.83121 5.87709 5.90817 5.95903 6.15568 6.21618 6.26684 6.33048 6.61559 6.83838 6.94656 7.09387 7.11536 7.21916 7.64216 8.41376 8.59105 8.93658 9.49560 11.02872 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032377 B = 0.003637 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.595259 B = 7697.489447 C = 7777.508106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.510 5.510 3 C 0.035 3.965 4 C -0.122 4.122 5 C -0.092 4.092 6 H 0.093 0.907 7 C 0.074 3.926 8 N -0.552 5.552 9 C 0.065 3.935 10 C 0.020 3.980 11 H 0.105 0.895 12 C 0.254 3.746 13 N -0.471 5.471 14 C -0.005 4.005 15 C -0.527 4.527 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.060 3.940 24 C -0.099 4.099 25 C 0.058 3.942 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.021 0.979 40 H 0.264 0.736 41 H 0.086 0.914 42 H 0.031 0.969 43 H 0.066 0.934 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.210 19.612 8.251 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.233 5.233 3 C -0.093 4.093 4 C -0.160 4.160 5 C -0.111 4.111 6 H 0.111 0.889 7 C -0.053 4.053 8 N -0.276 5.276 9 C -0.063 4.063 10 C -0.002 4.002 11 H 0.123 0.877 12 C -0.063 4.063 13 N -0.148 5.148 14 C -0.044 4.044 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.068 4.068 24 C -0.137 4.137 25 C -0.051 4.051 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.638 18.598 10.232 23.744 hybrid contribution -0.821 1.199 -2.540 2.927 sum -11.459 19.797 7.692 24.133 Atomic orbital electron populations 1.22529 0.88102 1.02086 1.00684 1.64685 1.07930 1.14907 1.35787 1.23503 0.95665 0.89475 1.00666 1.22376 0.97441 0.96589 0.99634 1.21823 0.95802 0.95472 0.98041 0.88857 1.21829 1.00889 0.87533 0.95084 1.61111 1.21279 1.09888 1.35360 1.22193 0.99387 0.95420 0.89326 1.19005 0.95358 0.94300 0.91569 0.87738 1.28657 0.93304 0.91721 0.92657 1.80997 1.11179 1.09954 1.12641 1.19645 0.96352 0.98387 0.90041 1.21027 1.43150 0.89605 1.02705 0.90763 1.24992 0.94892 0.94800 0.98439 1.69909 1.45164 1.09040 1.29401 0.86817 0.79515 0.80793 0.82401 1.20234 1.21284 1.18782 1.22075 0.88206 1.00611 0.95951 1.21361 1.00458 0.93626 0.98264 1.22443 0.95388 0.96405 0.90845 0.93793 0.91146 0.91420 0.95581 0.93652 0.90306 0.90594 0.91457 0.90339 0.94797 0.92980 0.90163 0.94595 0.96098 0.92575 0.89541 0.95107 0.91510 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.44 60.06 0.57 0.69 16 2 N -0.51 -5.08 5.51 -230.32 -1.27 -6.35 16 3 C 0.03 0.29 6.77 -0.81 -0.01 0.29 16 4 C -0.12 -1.02 6.72 -25.08 -0.17 -1.19 16 5 C -0.09 -0.96 2.63 -90.06 -0.24 -1.19 16 6 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 7 C 0.07 0.80 5.20 -4.08 -0.02 0.78 16 8 N -0.55 -7.10 4.19 -234.73 -0.98 -8.08 16 9 C 0.07 0.90 4.38 -3.83 -0.02 0.89 16 10 C 0.02 0.35 2.10 -93.41 -0.20 0.15 16 11 H 0.10 1.77 6.35 -51.93 -0.33 1.44 16 12 C 0.25 5.27 13.62 -20.76 -0.28 4.99 16 13 N -0.47 -10.79 18.54 42.16 0.78 -10.01 16 14 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 15 C -0.53 -14.18 9.15 -34.44 -0.32 -14.50 16 16 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 19 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 23 C 0.06 0.71 5.22 -3.68 -0.02 0.69 16 24 C -0.10 -1.08 6.05 -27.00 -0.16 -1.24 16 25 C 0.06 0.60 1.66 -67.30 -0.11 0.49 16 26 H 0.04 0.46 7.91 -51.93 -0.41 0.05 16 27 H 0.07 0.57 8.01 -51.93 -0.42 0.15 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.03 0.20 7.95 -51.93 -0.41 -0.21 16 30 H 0.05 0.35 7.69 -51.93 -0.40 -0.05 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.59 8.14 -51.94 -0.42 0.17 16 33 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 35 H 0.03 0.34 8.04 -51.93 -0.42 -0.07 16 36 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.08 1.09 7.97 -51.93 -0.41 0.67 16 38 H 0.04 0.72 7.20 -51.93 -0.37 0.35 16 39 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 1.09 6.26 -51.93 -0.33 0.77 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.65 8.01 -51.93 -0.42 0.24 16 44 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -31.12 344.37 -9.01 -40.13 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.67 Total: -3.03 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.16 Total: -7.48 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.70 Total: -50.74 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.12 -9.01 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879569519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.152 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds