Wall clock time and date at job start Mon Mar 30 2020 02:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.49177 * 111.00179 * 2 1 4 4 C 1.56247 * 106.92846 * 214.24365 * 3 2 1 5 5 C 1.52819 * 103.35760 * 357.97111 * 4 3 2 6 6 H 1.08998 * 110.26607 * 270.31457 * 5 4 3 7 7 C 1.51654 * 116.57621 * 143.64624 * 5 4 3 8 8 N 1.47681 * 107.08788 * 182.32010 * 7 5 4 9 9 C 1.46889 * 111.00582 * 184.96775 * 8 7 5 10 10 C 1.52996 * 109.47347 * 166.71989 * 9 8 7 11 11 H 1.09007 * 109.47358 * 56.84191 * 10 9 8 12 12 C 1.47201 * 109.47309 * 296.84294 * 10 9 8 13 13 N 7.06422 * 137.12918 * 206.68283 * 2 1 3 14 14 C 1.53002 * 109.47652 * 176.84045 * 10 9 8 15 15 C 1.50702 * 109.47421 * 184.99988 * 14 10 9 16 16 H 1.07994 * 120.00030 * 359.97438 * 15 14 10 17 17 C 1.37876 * 119.99492 * 180.02562 * 15 14 10 18 18 N 1.31517 * 119.99299 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00407 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47207 * 90.00534 * 19 17 15 21 21 H 1.48502 * 109.47158 * 210.00169 * 19 17 15 22 22 H 1.48497 * 109.47581 * 330.00277 * 19 17 15 23 23 C 1.46348 * 113.64292 * 59.01240 * 8 7 5 24 24 C 1.53849 * 111.77021 * 304.38069 * 23 8 7 25 25 C 1.46518 * 111.00035 * 244.65433 * 2 1 3 26 26 H 1.08998 * 110.27037 * 46.39707 * 25 2 1 27 27 H 1.09002 * 109.47386 * 175.34186 * 1 2 3 28 28 H 1.08996 * 109.47140 * 295.34735 * 1 2 3 29 29 H 1.09002 * 109.47288 * 55.34696 * 1 2 3 30 30 H 1.09006 * 109.98805 * 333.95932 * 3 2 1 31 31 H 1.09000 * 109.99138 * 95.23558 * 3 2 1 32 32 H 1.08989 * 110.91161 * 239.48777 * 4 3 2 33 33 H 1.09001 * 110.67097 * 116.33568 * 4 3 2 34 34 H 1.09005 * 109.93532 * 62.92911 * 7 5 4 35 35 H 1.09001 * 110.00597 * 301.75132 * 7 5 4 36 36 H 1.09002 * 109.47298 * 286.71670 * 9 8 7 37 37 H 1.09004 * 109.47401 * 46.72052 * 9 8 7 38 38 H 1.09001 * 109.46699 * 305.00304 * 14 10 9 39 39 H 1.09007 * 109.46849 * 64.99613 * 14 10 9 40 40 H 0.97004 * 119.99965 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.01742 * 183.79481 * 23 8 7 42 42 H 1.08999 * 108.95847 * 64.92838 * 23 8 7 43 43 H 1.08998 * 109.94637 * 175.73934 * 24 23 8 44 44 H 1.08996 * 109.94896 * 296.91181 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0036 1.3927 0.0000 4 6 3.3202 1.3746 -0.8411 5 6 3.4698 -0.0954 -1.2311 6 1 4.0431 -0.6305 -0.4741 7 6 4.0315 -0.3774 -2.6113 8 7 4.0323 -1.8436 -2.7882 9 6 4.6712 -2.2207 -4.0560 10 6 4.9527 -3.7245 -4.0579 11 1 4.0229 -4.2685 -3.8910 12 6 5.9085 -4.0461 -2.9857 13 7 6.6463 -4.2943 -2.1582 14 6 5.5457 -4.1308 -5.4086 15 6 5.7087 -5.6282 -5.4556 16 1 5.4188 -6.2299 -4.6070 17 6 6.2290 -6.2299 -6.5818 18 7 6.3708 -7.5367 -6.6231 19 14 6.7311 -5.1891 -8.0494 20 1 8.1544 -4.7890 -7.9088 21 1 6.5593 -5.9765 -9.2967 22 1 5.8791 -3.9743 -8.1096 23 6 2.7058 -2.4500 -2.6687 24 6 2.0361 -2.0981 -1.3290 25 6 1.9941 -0.5856 -1.2362 26 1 1.4711 -0.1755 -2.1001 27 1 -0.3634 -1.0243 -0.0835 28 1 -0.3633 0.4399 0.9287 29 1 -0.3634 0.5843 -0.8454 30 1 1.2779 2.0704 -0.4497 31 1 2.2244 1.7071 1.0200 32 1 4.1699 1.6994 -0.2408 33 1 3.2178 1.9975 -1.7297 34 1 5.0492 0.0061 -2.6839 35 1 3.4041 0.0881 -3.3715 36 1 4.0073 -1.9743 -4.8848 37 1 5.6085 -1.6754 -4.1669 38 1 4.8778 -3.8126 -6.2090 39 1 6.5182 -3.6552 -5.5362 40 1 6.7365 -7.9601 -7.4155 41 1 2.8022 -3.5331 -2.7439 42 1 2.0779 -2.0919 -3.4846 43 1 1.0235 -2.5004 -1.3025 44 1 2.6196 -2.5052 -0.5033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879569519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:02 Heat of formation + Delta-G solvation = 10.774675 kcal Electronic energy + Delta-G solvation = -21909.231731 eV Core-core repulsion = 18860.206460 eV Total energy + Delta-G solvation = -3049.025271 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24297 -38.97019 -37.20739 -35.51561 -34.16431 -33.54057 -32.27800 -29.79410 -28.65716 -26.64188 -24.96787 -24.10729 -23.22391 -22.30695 -21.39320 -20.84715 -18.89071 -18.17733 -16.92882 -16.55116 -16.34113 -16.07150 -15.81345 -15.68373 -15.28776 -14.91656 -14.61055 -14.51176 -14.33190 -14.03994 -13.81733 -13.56167 -13.32737 -13.15027 -13.09340 -12.86593 -12.67807 -12.46085 -12.22738 -12.19290 -12.03266 -11.94170 -11.74946 -11.67972 -11.46632 -11.42279 -11.15675 -10.93799 -10.72448 -9.41626 -9.11266 -8.23473 -6.29180 1.44359 1.45506 1.56529 2.07985 2.16045 2.42202 2.80132 3.01502 3.13191 3.34732 3.50856 3.77787 3.96856 4.07310 4.15360 4.21214 4.28933 4.36676 4.45780 4.48947 4.54875 4.59459 4.62907 4.68036 4.71246 4.81176 4.83617 4.88240 4.90154 4.99766 5.03550 5.05937 5.08692 5.20770 5.26200 5.31939 5.41759 5.46009 5.65020 5.93294 6.11833 6.16776 6.28689 6.29442 6.78522 6.93939 7.35188 8.93594 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032377 B = 0.003637 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.595259 B = 7697.489447 C = 7777.508106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.530 5.530 3 C 0.034 3.966 4 C -0.116 4.116 5 C -0.090 4.090 6 H 0.064 0.936 7 C 0.078 3.922 8 N -0.570 5.570 9 C 0.075 3.925 10 C 0.024 3.976 11 H 0.111 0.889 12 C 0.265 3.735 13 N -0.517 5.517 14 C -0.002 4.002 15 C -0.531 4.531 16 H 0.027 0.973 17 C 0.002 3.998 18 N -0.955 5.955 19 Si 0.949 3.051 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.222 1.222 23 C 0.061 3.939 24 C -0.095 4.095 25 C 0.063 3.937 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 23.071 6.837 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.254 5.254 3 C -0.093 4.093 4 C -0.155 4.155 5 C -0.110 4.110 6 H 0.083 0.917 7 C -0.049 4.049 8 N -0.296 5.296 9 C -0.053 4.053 10 C 0.002 3.998 11 H 0.129 0.871 12 C -0.051 4.051 13 N -0.195 5.195 14 C -0.041 4.041 15 C -0.569 4.569 16 H 0.045 0.955 17 C -0.195 4.195 18 N -0.596 5.596 19 Si 0.772 3.228 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.144 1.144 23 C -0.067 4.067 24 C -0.133 4.133 25 C -0.046 4.046 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.840 22.092 8.843 26.579 hybrid contribution -0.492 0.034 -1.968 2.028 sum -12.331 22.126 6.876 26.247 Atomic orbital electron populations 1.22547 0.87122 1.02219 1.01425 1.64663 1.09047 1.15977 1.35716 1.23544 0.95883 0.88865 1.01015 1.22366 0.97611 0.95221 1.00264 1.21750 0.95471 0.96626 0.97136 0.91717 1.21843 1.01455 0.86048 0.95550 1.61019 1.21954 1.11519 1.35069 1.22065 1.00567 0.91908 0.90770 1.19127 0.94326 0.97663 0.88679 0.87129 1.29388 0.92866 0.90364 0.92518 1.80991 1.12700 1.11623 1.14171 1.19592 0.97556 0.94237 0.92748 1.21403 1.41917 0.92587 1.00954 0.95460 1.26058 0.95097 0.96009 1.02297 1.70097 1.47291 1.11590 1.30610 0.85689 0.79541 0.80151 0.77466 1.20232 1.21612 1.14384 1.22052 0.88142 0.99767 0.96782 1.21289 1.00445 0.94518 0.97065 1.22354 0.95359 0.95593 0.91274 0.93247 0.91357 0.90636 0.94851 0.92443 0.90112 0.90223 0.89984 0.90097 0.93113 0.90291 0.89466 0.91727 0.95501 0.92683 0.90996 0.93505 0.90526 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.44 127.69 1.20 1.43 16 2 N -0.53 -9.70 5.51 -882.61 -4.86 -14.56 16 3 C 0.03 0.50 6.77 86.99 0.59 1.09 16 4 C -0.12 -1.67 6.72 31.66 0.21 -1.45 16 5 C -0.09 -1.73 2.63 -10.43 -0.03 -1.75 16 6 H 0.06 1.61 8.07 -2.39 -0.02 1.59 16 7 C 0.08 1.48 5.20 85.71 0.45 1.92 16 8 N -0.57 -13.50 4.19 -896.54 -3.75 -17.25 16 9 C 0.08 1.85 4.38 86.30 0.38 2.22 16 10 C 0.02 0.81 2.10 -12.60 -0.03 0.78 16 11 H 0.11 3.65 6.35 -2.38 -0.02 3.63 16 12 C 0.26 11.03 13.62 89.44 1.22 12.25 16 13 N -0.52 -24.18 18.54 20.01 0.37 -23.81 16 14 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 15 C -0.53 -28.76 9.15 25.60 0.23 -28.53 16 16 H 0.03 1.68 7.84 -2.91 -0.02 1.66 16 17 C 0.00 0.11 5.47 84.65 0.46 0.57 16 18 N -0.96 -59.42 13.96 21.45 0.30 -59.12 16 19 Si 0.95 41.32 27.47 68.60 1.88 43.20 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.22 -8.12 6.54 99.48 0.65 -7.47 16 23 C 0.06 1.33 5.22 86.69 0.45 1.78 16 24 C -0.09 -1.99 6.05 30.42 0.18 -1.81 16 25 C 0.06 1.18 1.66 45.39 0.08 1.26 16 26 H 0.05 0.89 7.91 -2.39 -0.02 0.87 16 27 H 0.07 0.99 8.01 -2.39 -0.02 0.98 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.03 0.43 7.95 -2.39 -0.02 0.41 16 30 H 0.06 0.71 7.69 -2.38 -0.02 0.69 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 0.96 8.07 -2.39 -0.02 0.94 16 34 H 0.08 1.49 8.04 -2.38 -0.02 1.47 16 35 H 0.05 0.82 8.04 -2.39 -0.02 0.80 16 36 H 0.08 1.56 8.12 -2.39 -0.02 1.54 16 37 H 0.09 2.05 7.97 -2.38 -0.02 2.03 16 38 H 0.06 2.29 7.20 -2.39 -0.02 2.27 16 39 H 0.03 1.06 7.57 -2.38 -0.02 1.05 16 40 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.07 1.76 6.26 -2.39 -0.01 1.75 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.42 8.01 -2.39 -0.02 1.40 16 44 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 Total: -1.00 -69.75 344.37 0.35 -69.40 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.90 Total: 12.37 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 5.51 Total: -10.23 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -7.94 Total: -114.74 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.88 Total: 43.20 kcal Total: -69.75 0.35 -69.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879569519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.175 kcal (2) G-P(sol) polarization free energy of solvation -69.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds