Wall clock time and date at job start Mon Mar 30 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48606 * 111.00059 * 2 1 4 4 C 1.55488 * 102.80423 * 158.67815 * 3 2 1 5 5 C 1.54126 * 101.25282 * 319.94233 * 4 3 2 6 6 H 1.08997 * 104.85642 * 275.97155 * 5 4 3 7 7 C 1.49520 * 113.04788 * 160.64532 * 5 4 3 8 8 N 1.46342 * 113.49170 * 262.04518 * 7 5 4 9 9 C 1.46891 * 111.00080 * 181.71929 * 8 7 5 10 10 C 1.53001 * 109.47147 * 187.41514 * 9 8 7 11 11 H 1.08994 * 109.47562 * 305.00254 * 10 9 8 12 12 C 1.47203 * 109.46949 * 65.00591 * 10 9 8 13 13 N 6.14228 * 145.76872 * 204.39603 * 2 1 3 14 14 C 1.53001 * 109.47198 * 184.99987 * 10 9 8 15 15 C 1.50693 * 109.47302 * 175.00305 * 14 10 9 16 16 H 1.08004 * 120.00189 * 0.02562 * 15 14 10 17 17 C 1.37880 * 120.00154 * 179.97438 * 15 14 10 18 18 N 1.31512 * 120.00087 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00098 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46832 * 90.00449 * 19 17 15 21 21 H 1.48499 * 109.47275 * 210.00224 * 19 17 15 22 22 H 1.48499 * 109.47213 * 330.00415 * 19 17 15 23 23 C 1.47389 * 108.98461 * 304.26685 * 8 7 5 24 24 C 1.52314 * 107.84820 * 71.12075 * 23 8 7 25 25 C 1.49098 * 110.99807 * 117.87933 * 2 1 3 26 26 H 1.09002 * 109.10417 * 336.08113 * 25 2 1 27 27 H 1.09002 * 109.47401 * 302.11825 * 1 2 3 28 28 H 1.09001 * 109.46874 * 182.11838 * 1 2 3 29 29 H 1.09004 * 109.46970 * 62.11971 * 1 2 3 30 30 H 1.08997 * 110.74135 * 277.00825 * 3 2 1 31 31 H 1.09003 * 110.74570 * 40.34931 * 3 2 1 32 32 H 1.09003 * 111.06313 * 201.95295 * 4 3 2 33 33 H 1.09001 * 111.10179 * 77.95475 * 4 3 2 34 34 H 1.08996 * 108.67821 * 141.00685 * 7 5 4 35 35 H 1.08997 * 108.57319 * 23.00948 * 7 5 4 36 36 H 1.09001 * 109.47563 * 307.41804 * 9 8 7 37 37 H 1.09004 * 109.47523 * 67.41654 * 9 8 7 38 38 H 1.09001 * 109.47305 * 295.00133 * 14 10 9 39 39 H 1.09002 * 109.47415 * 55.00100 * 14 10 9 40 40 H 0.97002 * 120.00569 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.78458 * 311.53523 * 23 8 7 42 42 H 1.08999 * 109.78899 * 190.70868 * 23 8 7 43 43 H 1.09000 * 108.87580 * 181.53691 * 24 23 8 44 44 H 1.08999 * 108.79654 * 63.04042 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3873 0.0000 4 6 3.4437 1.2029 0.5513 5 6 3.2111 0.1551 1.6574 6 1 2.8954 0.7318 2.5268 7 6 4.4617 -0.5587 2.0600 8 7 4.6226 -1.8625 1.4151 9 6 5.8450 -2.5320 1.8791 10 6 6.0771 -3.7992 1.0538 11 1 5.1905 -4.4314 1.1014 12 6 6.3425 -3.4309 -0.3465 13 7 6.5473 -3.1467 -1.4272 14 6 7.2780 -4.5618 1.6169 15 6 7.4320 -5.8690 0.8832 16 1 6.7425 -6.1297 0.0938 17 6 8.4537 -6.7319 1.2189 18 7 9.2936 -6.4143 2.1797 19 14 8.6441 -8.3527 0.3098 20 1 9.5285 -8.1590 -0.8674 21 1 9.2437 -9.3625 1.2186 22 1 7.3115 -8.8249 -0.1445 23 6 3.4317 -2.6851 1.6932 24 6 2.2689 -2.1074 0.8969 25 6 2.0033 -0.6509 1.2304 26 1 1.2521 -0.5953 2.0183 27 1 -0.3634 0.5464 0.8704 28 1 -0.3633 -1.0270 0.0380 29 1 -0.3633 0.4806 -0.9084 30 1 2.0238 1.7923 -1.0117 31 1 1.4147 2.0262 0.6600 32 1 3.8258 2.1346 0.9684 33 1 4.1120 0.8178 -0.2189 34 1 4.4491 -0.7027 3.1403 35 1 5.3166 0.0664 1.8019 36 1 6.6949 -1.8601 1.7601 37 1 5.7368 -2.7981 2.9307 38 1 8.1806 -3.9645 1.4881 39 1 7.1197 -4.7569 2.6776 40 1 10.0127 -7.0211 2.4156 41 1 3.2017 -2.6531 2.7581 42 1 3.6143 -3.7147 1.3852 43 1 1.3716 -2.6876 1.1117 44 1 2.4957 -2.1900 -0.1660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879569520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:05 Heat of formation + Delta-G solvation = 31.511982 kcal Electronic energy + Delta-G solvation = -21989.442947 eV Core-core repulsion = 18941.316913 eV Total energy + Delta-G solvation = -3048.126034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29857 -37.72706 -35.74594 -33.72195 -32.96950 -32.34020 -30.79517 -28.89653 -26.95208 -25.59081 -23.82691 -23.07983 -21.88585 -21.51046 -21.29220 -18.41820 -16.83606 -16.61136 -16.24893 -15.73169 -15.09361 -14.94735 -14.71930 -14.40017 -13.99842 -13.58793 -13.31643 -13.24055 -12.84620 -12.66574 -12.36314 -12.24039 -12.07015 -11.85705 -11.72130 -11.48795 -11.38955 -11.15581 -11.03244 -10.92910 -10.74206 -10.69223 -10.51229 -10.44410 -10.26590 -9.99198 -9.50036 -9.19103 -8.58543 -8.43629 -8.15246 -6.07685 -4.10555 3.31631 3.38113 3.41545 3.75121 3.81285 3.91046 4.04853 4.39453 4.43405 4.52428 4.63903 4.96433 5.00100 5.07057 5.16204 5.22492 5.26081 5.29928 5.30638 5.38717 5.45563 5.56348 5.62571 5.65668 5.68721 5.74405 5.81317 5.85073 5.93588 5.98107 6.07605 6.12161 6.12734 6.40003 6.43798 6.54953 6.79517 6.90230 7.21067 7.25765 7.44972 7.55709 7.87876 8.25740 8.66538 8.94376 9.54852 11.03252 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.003683 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.950268 B = 7599.798974 C = 7755.780193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.518 5.518 3 C 0.032 3.968 4 C -0.117 4.117 5 C -0.085 4.085 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.525 5.525 9 C 0.060 3.940 10 C 0.011 3.989 11 H 0.100 0.900 12 C 0.256 3.744 13 N -0.479 5.479 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.046 3.954 24 C -0.100 4.100 25 C 0.088 3.912 26 H 0.044 0.956 27 H 0.023 0.977 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.262 0.738 41 H 0.036 0.964 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.134 14.242 3.210 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.242 5.242 3 C -0.095 4.095 4 C -0.155 4.155 5 C -0.105 4.105 6 H 0.073 0.927 7 C -0.059 4.059 8 N -0.249 5.249 9 C -0.069 4.069 10 C -0.011 4.011 11 H 0.118 0.882 12 C -0.061 4.061 13 N -0.156 5.156 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.082 4.082 24 C -0.139 4.139 25 C -0.021 4.021 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.501 14.416 0.695 21.180 hybrid contribution -0.327 -0.666 1.608 1.771 sum -15.828 13.750 2.303 21.092 Atomic orbital electron populations 1.22515 0.88305 1.01980 1.00444 1.65160 1.07540 1.14474 1.37037 1.23316 0.95404 0.89861 1.00964 1.22668 0.96572 0.97805 0.98424 1.20592 0.94871 0.96416 0.98582 0.92686 1.21152 0.97172 0.91637 0.95923 1.62673 1.02325 1.02675 1.57249 1.22255 0.92051 0.95388 0.97165 1.19241 1.03282 0.95562 0.83006 0.88232 1.28806 0.91453 0.91273 0.94522 1.80977 1.10757 1.10873 1.12960 1.19171 0.90384 0.94351 0.96824 1.21147 1.13487 1.02730 1.18950 0.92486 1.24948 0.95613 0.98373 0.95015 1.69937 1.16628 1.37055 1.29486 0.86601 0.78499 0.83373 0.79663 1.20634 1.21142 1.19722 1.22213 0.90245 0.98163 0.97625 1.21107 0.97008 0.93089 1.02660 1.21605 0.94911 0.95268 0.90273 0.93754 0.95821 0.91304 0.91447 0.90097 0.94091 0.91120 0.89786 0.95111 0.90582 0.90228 0.92875 0.95579 0.94509 0.92830 0.94616 0.89491 0.92403 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.37 60.07 0.56 0.71 16 2 N -0.52 -5.70 4.93 -231.72 -1.14 -6.85 16 3 C 0.03 0.31 6.60 -1.56 -0.01 0.30 16 4 C -0.12 -1.18 6.39 -24.82 -0.16 -1.34 16 5 C -0.09 -0.90 2.60 -92.58 -0.24 -1.14 16 6 H 0.05 0.52 8.05 -51.93 -0.42 0.10 16 7 C 0.07 0.80 4.89 -5.85 -0.03 0.78 16 8 N -0.53 -7.20 4.47 -237.29 -1.06 -8.26 16 9 C 0.06 0.90 4.29 -3.83 -0.02 0.88 16 10 C 0.01 0.20 2.16 -93.40 -0.20 0.00 16 11 H 0.10 1.75 6.14 -51.93 -0.32 1.43 16 12 C 0.26 5.46 13.67 -20.76 -0.28 5.18 16 13 N -0.48 -11.11 18.54 42.15 0.78 -10.32 16 14 C 0.03 0.73 4.42 -27.89 -0.12 0.60 16 15 C -0.52 -14.02 8.60 -34.44 -0.30 -14.32 16 16 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.05 0.57 5.43 -3.91 -0.02 0.55 16 24 C -0.10 -1.19 5.69 -27.71 -0.16 -1.34 16 25 C 0.09 0.95 2.78 -67.95 -0.19 0.76 16 26 H 0.04 0.45 7.68 -51.93 -0.40 0.06 16 27 H 0.02 0.19 8.01 -51.93 -0.42 -0.23 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.35 7.96 -51.93 -0.41 -0.06 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.03 0.33 8.11 -51.93 -0.42 -0.09 16 35 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 36 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 37 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.04 0.41 8.01 -51.93 -0.42 -0.01 16 42 H 0.09 1.13 5.96 -51.93 -0.31 0.82 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 1.20 7.92 -51.93 -0.41 0.79 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -30.20 347.30 -9.42 -39.62 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -7.68 Total: -4.20 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.26 Total: -6.75 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.69 Total: -50.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.20 -9.42 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879569520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.129 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds