Wall clock time and date at job start Mon Mar 30 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48606 * 111.00059 * 2 1 4 4 C 1.55488 * 102.80423 * 158.67815 * 3 2 1 5 5 C 1.54126 * 101.25282 * 319.94233 * 4 3 2 6 6 H 1.08997 * 104.85642 * 275.97155 * 5 4 3 7 7 C 1.49520 * 113.04788 * 160.64532 * 5 4 3 8 8 N 1.46342 * 113.49170 * 262.04518 * 7 5 4 9 9 C 1.46891 * 111.00080 * 181.71929 * 8 7 5 10 10 C 1.53001 * 109.47147 * 187.41514 * 9 8 7 11 11 H 1.08994 * 109.47562 * 305.00254 * 10 9 8 12 12 C 1.47203 * 109.46949 * 65.00591 * 10 9 8 13 13 N 6.14228 * 145.76872 * 204.39603 * 2 1 3 14 14 C 1.53001 * 109.47198 * 184.99987 * 10 9 8 15 15 C 1.50693 * 109.47302 * 175.00305 * 14 10 9 16 16 H 1.08004 * 120.00189 * 0.02562 * 15 14 10 17 17 C 1.37880 * 120.00154 * 179.97438 * 15 14 10 18 18 N 1.31512 * 120.00087 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00098 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46832 * 90.00449 * 19 17 15 21 21 H 1.48499 * 109.47275 * 210.00224 * 19 17 15 22 22 H 1.48499 * 109.47213 * 330.00415 * 19 17 15 23 23 C 1.47389 * 108.98461 * 304.26685 * 8 7 5 24 24 C 1.52314 * 107.84820 * 71.12075 * 23 8 7 25 25 C 1.49098 * 110.99807 * 117.87933 * 2 1 3 26 26 H 1.09002 * 109.10417 * 336.08113 * 25 2 1 27 27 H 1.09002 * 109.47401 * 302.11825 * 1 2 3 28 28 H 1.09001 * 109.46874 * 182.11838 * 1 2 3 29 29 H 1.09004 * 109.46970 * 62.11971 * 1 2 3 30 30 H 1.08997 * 110.74135 * 277.00825 * 3 2 1 31 31 H 1.09003 * 110.74570 * 40.34931 * 3 2 1 32 32 H 1.09003 * 111.06313 * 201.95295 * 4 3 2 33 33 H 1.09001 * 111.10179 * 77.95475 * 4 3 2 34 34 H 1.08996 * 108.67821 * 141.00685 * 7 5 4 35 35 H 1.08997 * 108.57319 * 23.00948 * 7 5 4 36 36 H 1.09001 * 109.47563 * 307.41804 * 9 8 7 37 37 H 1.09004 * 109.47523 * 67.41654 * 9 8 7 38 38 H 1.09001 * 109.47305 * 295.00133 * 14 10 9 39 39 H 1.09002 * 109.47415 * 55.00100 * 14 10 9 40 40 H 0.97002 * 120.00569 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.78458 * 311.53523 * 23 8 7 42 42 H 1.08999 * 109.78899 * 190.70868 * 23 8 7 43 43 H 1.09000 * 108.87580 * 181.53691 * 24 23 8 44 44 H 1.08999 * 108.79654 * 63.04042 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3873 0.0000 4 6 3.4437 1.2029 0.5513 5 6 3.2111 0.1551 1.6574 6 1 2.8954 0.7318 2.5268 7 6 4.4617 -0.5587 2.0600 8 7 4.6226 -1.8625 1.4151 9 6 5.8450 -2.5320 1.8791 10 6 6.0771 -3.7992 1.0538 11 1 5.1905 -4.4314 1.1014 12 6 6.3425 -3.4309 -0.3465 13 7 6.5473 -3.1467 -1.4272 14 6 7.2780 -4.5618 1.6169 15 6 7.4320 -5.8690 0.8832 16 1 6.7425 -6.1297 0.0938 17 6 8.4537 -6.7319 1.2189 18 7 9.2936 -6.4143 2.1797 19 14 8.6441 -8.3527 0.3098 20 1 9.5285 -8.1590 -0.8674 21 1 9.2437 -9.3625 1.2186 22 1 7.3115 -8.8249 -0.1445 23 6 3.4317 -2.6851 1.6932 24 6 2.2689 -2.1074 0.8969 25 6 2.0033 -0.6509 1.2304 26 1 1.2521 -0.5953 2.0183 27 1 -0.3634 0.5464 0.8704 28 1 -0.3633 -1.0270 0.0380 29 1 -0.3633 0.4806 -0.9084 30 1 2.0238 1.7923 -1.0117 31 1 1.4147 2.0262 0.6600 32 1 3.8258 2.1346 0.9684 33 1 4.1120 0.8178 -0.2189 34 1 4.4491 -0.7027 3.1403 35 1 5.3166 0.0664 1.8019 36 1 6.6949 -1.8601 1.7601 37 1 5.7368 -2.7981 2.9307 38 1 8.1806 -3.9645 1.4881 39 1 7.1197 -4.7569 2.6776 40 1 10.0127 -7.0211 2.4156 41 1 3.2017 -2.6531 2.7581 42 1 3.6143 -3.7147 1.3852 43 1 1.3716 -2.6876 1.1117 44 1 2.4957 -2.1900 -0.1660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879569520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:05 Heat of formation + Delta-G solvation = 12.563455 kcal Electronic energy + Delta-G solvation = -21990.264617 eV Core-core repulsion = 18941.316913 eV Total energy + Delta-G solvation = -3048.947704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16833 -38.94160 -37.20195 -35.52443 -34.09424 -33.64263 -32.08969 -29.78086 -28.49188 -26.61623 -25.06847 -24.03377 -23.55550 -22.68058 -22.11434 -19.29455 -18.55192 -18.16819 -17.42086 -16.64534 -16.55122 -15.99261 -15.84086 -15.73538 -14.89605 -14.86008 -14.48795 -14.31414 -14.23102 -14.00698 -13.75148 -13.42274 -13.37349 -13.04681 -12.99035 -12.91835 -12.70246 -12.50658 -12.46186 -12.28783 -12.13452 -11.92084 -11.77522 -11.56118 -11.36619 -11.29619 -11.13246 -10.93998 -10.53994 -9.33439 -9.16737 -8.18216 -6.26162 1.40775 1.43189 1.52250 2.09956 2.18071 2.42659 2.93106 3.07675 3.17415 3.38477 3.59223 3.72321 3.85296 4.09872 4.19150 4.29977 4.35220 4.39095 4.45852 4.55384 4.57508 4.58678 4.66088 4.75339 4.79267 4.83833 4.86220 4.89753 4.98634 5.00902 5.07942 5.12528 5.15324 5.24146 5.30631 5.48316 5.48711 5.63772 5.80793 6.01551 6.11873 6.17868 6.23730 6.27072 6.84987 6.96763 7.42274 8.92702 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.003683 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.950268 B = 7599.798974 C = 7755.780193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.542 5.542 3 C 0.035 3.965 4 C -0.115 4.115 5 C -0.088 4.088 6 H 0.074 0.926 7 C 0.070 3.930 8 N -0.542 5.542 9 C 0.071 3.929 10 C 0.021 3.979 11 H 0.115 0.885 12 C 0.267 3.733 13 N -0.515 5.515 14 C 0.039 3.961 15 C -0.538 4.538 16 H 0.053 0.947 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.947 3.053 20 H -0.284 1.284 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.045 3.955 24 C -0.094 4.094 25 C 0.087 3.913 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.001 0.999 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.671 14.740 4.168 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.267 5.267 3 C -0.093 4.093 4 C -0.153 4.153 5 C -0.107 4.107 6 H 0.092 0.908 7 C -0.058 4.058 8 N -0.266 5.266 9 C -0.058 4.058 10 C 0.000 4.000 11 H 0.133 0.867 12 C -0.049 4.049 13 N -0.193 5.193 14 C 0.000 4.000 15 C -0.577 4.577 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.772 3.228 20 H -0.211 1.211 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.083 4.083 24 C -0.133 4.133 25 C -0.021 4.021 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.057 14.921 1.650 22.723 hybrid contribution 0.133 -0.800 1.288 1.521 sum -16.924 14.122 2.938 22.237 Atomic orbital electron populations 1.22525 0.87149 1.02242 1.01160 1.65123 1.08850 1.15320 1.37385 1.23321 0.95143 0.89555 1.01264 1.22638 0.96454 0.98480 0.97706 1.20616 0.94304 0.96436 0.99356 0.90785 1.21203 0.97734 0.90349 0.96548 1.62607 1.02125 1.03727 1.58155 1.22061 0.92919 0.93618 0.97179 1.19211 1.01760 0.97322 0.81730 0.86719 1.29339 0.90450 0.90234 0.94911 1.80971 1.11825 1.12313 1.14184 1.18987 0.91214 0.93185 0.96613 1.21548 1.13176 1.04111 1.18829 0.92913 1.25691 0.95595 1.01513 0.95840 1.70025 1.17246 1.38234 1.30789 0.85721 0.78613 0.80022 0.78398 1.21076 1.20289 1.18840 1.22237 0.89878 0.97450 0.98690 1.21047 0.97288 0.94367 1.00579 1.21603 0.95396 0.94487 0.90615 0.92532 0.94748 0.91325 0.91011 0.90276 0.92521 0.89279 0.92579 0.93702 0.90861 0.90567 0.91064 0.98037 0.94549 0.92710 0.92882 0.90447 0.91051 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.37 127.69 1.20 1.48 16 2 N -0.54 -11.11 4.93 -887.04 -4.37 -15.49 16 3 C 0.03 0.61 6.60 86.83 0.57 1.18 16 4 C -0.11 -2.15 6.39 31.83 0.20 -1.95 16 5 C -0.09 -1.64 2.60 -12.07 -0.03 -1.67 16 6 H 0.07 1.13 8.05 -2.39 -0.02 1.11 16 7 C 0.07 1.46 4.89 85.30 0.42 1.88 16 8 N -0.54 -14.11 4.47 -904.66 -4.05 -18.15 16 9 C 0.07 2.04 4.29 86.31 0.37 2.41 16 10 C 0.02 0.79 2.16 -12.60 -0.03 0.76 16 11 H 0.12 3.91 6.14 -2.39 -0.01 3.89 16 12 C 0.27 11.40 13.67 89.44 1.22 12.62 16 13 N -0.52 -24.15 18.54 20.01 0.37 -23.78 16 14 C 0.04 1.80 4.42 29.85 0.13 1.93 16 15 C -0.54 -28.75 8.60 25.60 0.22 -28.53 16 16 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 17 C 0.01 0.69 5.46 84.66 0.46 1.15 16 18 N -0.92 -53.08 13.29 21.45 0.28 -52.79 16 19 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 23 C 0.05 1.05 5.43 85.98 0.47 1.51 16 24 C -0.09 -2.10 5.69 29.96 0.17 -1.93 16 25 C 0.09 1.71 2.78 43.54 0.12 1.83 16 26 H 0.06 0.98 7.68 -2.39 -0.02 0.96 16 27 H 0.03 0.47 8.01 -2.39 -0.02 0.45 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 0.82 7.96 -2.39 -0.02 0.80 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 0.83 8.11 -2.39 -0.02 0.81 16 35 H 0.07 1.57 7.79 -2.39 -0.02 1.55 16 36 H 0.08 2.24 8.09 -2.39 -0.02 2.22 16 37 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 38 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 41 H 0.05 1.05 8.01 -2.39 -0.02 1.03 16 42 H 0.08 1.91 5.96 -2.39 -0.01 1.89 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 Total: -1.00 -64.18 347.30 0.71 -63.46 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.95 Total: 8.37 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 5.50 Total: -7.32 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -7.77 Total: -110.21 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -64.18 0.71 -63.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879569520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.028 kcal (2) G-P(sol) polarization free energy of solvation -64.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds