Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48608 * 110.99862 * 2 1 4 4 C 1.55484 * 102.80326 * 158.68325 * 3 2 1 5 5 C 1.54126 * 101.25207 * 319.94784 * 4 3 2 6 6 H 1.09003 * 104.84957 * 275.96394 * 5 4 3 7 7 C 1.49510 * 113.04725 * 160.64922 * 5 4 3 8 8 N 1.46349 * 113.48829 * 262.03589 * 7 5 4 9 9 C 1.46899 * 110.99967 * 181.71843 * 8 7 5 10 10 C 1.52998 * 109.47403 * 285.59191 * 9 8 7 11 11 H 1.08997 * 109.47110 * 55.41841 * 10 9 8 12 12 C 1.47200 * 109.47056 * 295.41624 * 10 9 8 13 13 N 6.11186 * 154.85650 * 211.10859 * 2 1 3 14 14 C 1.53007 * 109.47256 * 175.41534 * 10 9 8 15 15 C 1.50700 * 109.47349 * 184.99620 * 14 10 9 16 16 H 1.08000 * 119.99504 * 0.02562 * 15 14 10 17 17 C 1.37875 * 119.99881 * 179.97438 * 15 14 10 18 18 N 1.31508 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99563 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47507 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46881 * 120.00308 * 19 17 15 22 22 H 1.48500 * 109.47418 * 240.00271 * 19 17 15 23 23 C 1.47385 * 108.98743 * 304.27100 * 8 7 5 24 24 C 1.52305 * 107.84765 * 71.11637 * 23 8 7 25 25 C 1.49087 * 111.00356 * 117.88268 * 2 1 3 26 26 H 1.08997 * 109.10407 * 336.08509 * 25 2 1 27 27 H 1.08999 * 109.46818 * 302.11288 * 1 2 3 28 28 H 1.09000 * 109.46874 * 182.11524 * 1 2 3 29 29 H 1.09000 * 109.47429 * 62.11372 * 1 2 3 30 30 H 1.09003 * 110.74491 * 277.00973 * 3 2 1 31 31 H 1.08996 * 110.74548 * 40.35605 * 3 2 1 32 32 H 1.08991 * 111.06613 * 201.94810 * 4 3 2 33 33 H 1.09004 * 111.09943 * 77.95485 * 4 3 2 34 34 H 1.09001 * 108.68569 * 141.00120 * 7 5 4 35 35 H 1.08998 * 108.58025 * 22.99871 * 7 5 4 36 36 H 1.09009 * 109.47269 * 45.59487 * 9 8 7 37 37 H 1.09001 * 109.47436 * 165.58917 * 9 8 7 38 38 H 1.08994 * 109.47407 * 305.00241 * 14 10 9 39 39 H 1.09004 * 109.46480 * 64.99859 * 14 10 9 40 40 H 0.97006 * 119.99893 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.78053 * 311.53346 * 23 8 7 42 42 H 1.08990 * 109.78497 * 190.70841 * 23 8 7 43 43 H 1.08994 * 108.87200 * 181.53653 * 24 23 8 44 44 H 1.09003 * 108.79352 * 63.04645 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3874 0.0000 4 6 3.4437 1.2029 0.5512 5 6 3.2112 0.1550 1.6572 6 1 2.8956 0.7317 2.5266 7 6 4.4618 -0.5587 2.0596 8 7 4.6227 -1.8625 1.4146 9 6 5.8451 -2.5320 1.8785 10 6 7.0654 -1.8649 1.2408 11 1 7.0518 -0.7973 1.4599 12 6 7.0295 -2.0673 -0.2168 13 7 7.0018 -2.2234 -1.3417 14 6 8.3423 -2.4862 1.8106 15 6 9.5422 -1.7477 1.2758 16 1 9.4075 -0.9180 0.5977 17 6 10.8119 -2.1307 1.6531 18 7 10.9758 -3.1407 2.4792 19 14 12.2991 -1.2149 0.9907 20 1 11.8481 -0.1265 0.0867 21 1 13.0659 -0.6327 2.1214 22 1 13.1657 -2.1569 0.2379 23 6 3.4318 -2.6852 1.6927 24 6 2.2690 -2.1074 0.8967 25 6 2.0034 -0.6509 1.2302 26 1 1.2523 -0.5954 2.0181 27 1 -0.3633 0.5463 0.8704 28 1 -0.3633 -1.0270 0.0379 29 1 -0.3634 0.4806 -0.9083 30 1 2.0238 1.7924 -1.0117 31 1 1.4147 2.0262 0.6600 32 1 3.8258 2.1345 0.9682 33 1 4.1119 0.8179 -0.2192 34 1 4.4494 -0.7028 3.1399 35 1 5.3167 0.0663 1.8014 36 1 5.9134 -2.4529 2.9636 37 1 5.8147 -3.5833 1.5922 38 1 8.3270 -2.4152 2.8981 39 1 8.3994 -3.5340 1.5157 40 1 11.8690 -3.4099 2.7449 41 1 3.2019 -2.6532 2.7577 42 1 3.6145 -3.7146 1.3847 43 1 1.3718 -2.6877 1.1115 44 1 2.4957 -2.1900 -0.1663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879569522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = 30.239830 kcal Electronic energy + Delta-G solvation = -22047.546408 eV Core-core repulsion = 18999.365209 eV Total energy + Delta-G solvation = -3048.181199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28599 -37.66646 -35.76933 -33.70942 -32.95892 -32.42369 -30.66753 -28.93294 -26.98271 -25.47948 -24.05823 -22.83198 -21.82711 -21.60311 -21.30101 -18.45331 -16.87606 -16.51113 -16.21146 -15.69372 -15.22492 -14.80418 -14.71983 -14.46577 -13.98842 -13.58128 -13.28387 -13.15958 -12.93351 -12.59225 -12.41000 -12.15086 -12.09766 -11.90188 -11.71805 -11.50662 -11.28095 -11.13812 -11.06182 -10.95011 -10.75181 -10.69424 -10.49082 -10.43148 -10.27991 -10.01446 -9.49068 -9.17654 -8.58283 -8.44215 -8.15647 -6.07870 -4.10554 3.29739 3.38061 3.42950 3.76578 3.81849 3.92084 4.05005 4.42956 4.43317 4.55063 4.66514 4.96756 5.00691 5.07683 5.16611 5.22184 5.27401 5.30526 5.31844 5.36487 5.48557 5.59321 5.62008 5.65049 5.73544 5.74669 5.80911 5.86445 5.94698 6.00461 6.04872 6.12586 6.19652 6.35573 6.43665 6.55363 6.79578 6.90393 7.21003 7.25697 7.45311 7.56183 7.88013 8.25945 8.67608 8.94680 9.54871 11.03120 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.003861 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.898384 B = 7250.925656 C = 7543.958736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.519 5.519 3 C 0.032 3.968 4 C -0.117 4.117 5 C -0.085 4.085 6 H 0.055 0.945 7 C 0.065 3.935 8 N -0.525 5.525 9 C 0.060 3.940 10 C 0.013 3.987 11 H 0.098 0.902 12 C 0.257 3.743 13 N -0.480 5.480 14 C 0.031 3.969 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.053 3.947 24 C -0.100 4.100 25 C 0.088 3.912 26 H 0.044 0.956 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.026 0.974 40 H 0.261 0.739 41 H 0.034 0.966 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.310 6.131 2.481 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.242 5.242 3 C -0.095 4.095 4 C -0.155 4.155 5 C -0.105 4.105 6 H 0.074 0.926 7 C -0.064 4.064 8 N -0.249 5.249 9 C -0.069 4.069 10 C -0.009 4.009 11 H 0.115 0.885 12 C -0.060 4.060 13 N -0.157 5.157 14 C -0.008 4.008 15 C -0.562 4.562 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.076 4.076 24 C -0.138 4.138 25 C -0.021 4.021 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.051 5.602 -0.113 20.819 hybrid contribution 0.485 0.902 1.773 2.047 sum -19.565 6.503 1.660 20.685 Atomic orbital electron populations 1.22510 0.88387 1.01853 1.00480 1.65151 1.07456 1.14657 1.36982 1.23320 0.95502 0.89706 1.01006 1.22678 0.96446 0.97966 0.98446 1.20594 0.94783 0.96437 0.98665 0.92604 1.21265 0.97407 0.91778 0.95904 1.62649 1.02022 1.02844 1.57395 1.22303 0.88014 0.98590 0.97994 1.19186 0.97192 1.02280 0.82237 0.88453 1.28812 0.90352 0.92066 0.94737 1.80977 1.11393 1.09986 1.13325 1.19180 0.88285 0.96576 0.96761 1.21185 0.90838 1.16099 1.28066 0.92446 1.24950 0.99084 0.95030 0.94941 1.69948 1.22502 1.26843 1.33803 0.86548 0.82833 0.79939 0.78846 1.19650 1.20903 1.20974 1.22094 0.90589 0.97330 0.97541 1.21104 0.96806 0.93305 1.02602 1.21591 0.95038 0.95129 0.90293 0.93795 0.95810 0.91427 0.91446 0.90079 0.94060 0.90922 0.89731 0.94888 0.89880 0.92747 0.90202 0.94540 0.95587 0.92894 0.94778 0.90432 0.92574 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.37 60.07 0.56 0.71 16 2 N -0.52 -5.72 4.93 -231.74 -1.14 -6.86 16 3 C 0.03 0.33 6.60 -1.56 -0.01 0.32 16 4 C -0.12 -1.27 6.39 -24.82 -0.16 -1.43 16 5 C -0.09 -0.93 2.60 -92.59 -0.24 -1.17 16 6 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 7 C 0.06 0.79 4.75 -5.85 -0.03 0.76 16 8 N -0.53 -7.17 4.40 -237.29 -1.04 -8.22 16 9 C 0.06 0.89 4.33 -3.83 -0.02 0.88 16 10 C 0.01 0.24 2.24 -93.40 -0.21 0.03 16 11 H 0.10 1.71 6.71 -51.93 -0.35 1.37 16 12 C 0.26 5.48 13.66 -20.76 -0.28 5.19 16 13 N -0.48 -11.13 18.54 42.15 0.78 -10.35 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 15 C -0.52 -13.98 8.60 -34.44 -0.30 -14.28 16 16 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.05 0.62 5.56 -3.91 -0.02 0.59 16 24 C -0.10 -1.12 5.69 -27.71 -0.16 -1.28 16 25 C 0.09 0.95 2.78 -67.96 -0.19 0.76 16 26 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 27 H 0.02 0.19 8.01 -51.93 -0.42 -0.22 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.37 7.96 -51.93 -0.41 -0.04 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.37 7.98 -51.93 -0.41 -0.04 16 35 H 0.08 1.06 6.36 -51.93 -0.33 0.73 16 36 H 0.05 0.75 7.92 -51.92 -0.41 0.34 16 37 H 0.08 1.20 7.78 -51.93 -0.40 0.80 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.03 0.36 8.01 -51.93 -0.42 -0.05 16 42 H 0.08 0.89 7.81 -51.93 -0.41 0.48 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -30.21 347.70 -9.42 -39.63 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -7.70 Total: -4.24 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.27 Total: -6.73 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.67 Total: -50.26 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.21 -9.42 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879569522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.874 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds