Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48608 * 110.99862 * 2 1 4 4 C 1.55484 * 102.80326 * 158.68325 * 3 2 1 5 5 C 1.54126 * 101.25207 * 319.94784 * 4 3 2 6 6 H 1.09003 * 104.84957 * 275.96394 * 5 4 3 7 7 C 1.49510 * 113.04725 * 160.64922 * 5 4 3 8 8 N 1.46349 * 113.48829 * 262.03589 * 7 5 4 9 9 C 1.46899 * 110.99967 * 181.71843 * 8 7 5 10 10 C 1.52998 * 109.47403 * 285.59191 * 9 8 7 11 11 H 1.08997 * 109.47110 * 55.41841 * 10 9 8 12 12 C 1.47200 * 109.47056 * 295.41624 * 10 9 8 13 13 N 6.11186 * 154.85650 * 211.10859 * 2 1 3 14 14 C 1.53007 * 109.47256 * 175.41534 * 10 9 8 15 15 C 1.50700 * 109.47349 * 184.99620 * 14 10 9 16 16 H 1.08000 * 119.99504 * 0.02562 * 15 14 10 17 17 C 1.37875 * 119.99881 * 179.97438 * 15 14 10 18 18 N 1.31508 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99563 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47507 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46881 * 120.00308 * 19 17 15 22 22 H 1.48500 * 109.47418 * 240.00271 * 19 17 15 23 23 C 1.47385 * 108.98743 * 304.27100 * 8 7 5 24 24 C 1.52305 * 107.84765 * 71.11637 * 23 8 7 25 25 C 1.49087 * 111.00356 * 117.88268 * 2 1 3 26 26 H 1.08997 * 109.10407 * 336.08509 * 25 2 1 27 27 H 1.08999 * 109.46818 * 302.11288 * 1 2 3 28 28 H 1.09000 * 109.46874 * 182.11524 * 1 2 3 29 29 H 1.09000 * 109.47429 * 62.11372 * 1 2 3 30 30 H 1.09003 * 110.74491 * 277.00973 * 3 2 1 31 31 H 1.08996 * 110.74548 * 40.35605 * 3 2 1 32 32 H 1.08991 * 111.06613 * 201.94810 * 4 3 2 33 33 H 1.09004 * 111.09943 * 77.95485 * 4 3 2 34 34 H 1.09001 * 108.68569 * 141.00120 * 7 5 4 35 35 H 1.08998 * 108.58025 * 22.99871 * 7 5 4 36 36 H 1.09009 * 109.47269 * 45.59487 * 9 8 7 37 37 H 1.09001 * 109.47436 * 165.58917 * 9 8 7 38 38 H 1.08994 * 109.47407 * 305.00241 * 14 10 9 39 39 H 1.09004 * 109.46480 * 64.99859 * 14 10 9 40 40 H 0.97006 * 119.99893 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.78053 * 311.53346 * 23 8 7 42 42 H 1.08990 * 109.78497 * 190.70841 * 23 8 7 43 43 H 1.08994 * 108.87200 * 181.53653 * 24 23 8 44 44 H 1.09003 * 108.79352 * 63.04645 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3874 0.0000 4 6 3.4437 1.2029 0.5512 5 6 3.2112 0.1550 1.6572 6 1 2.8956 0.7317 2.5266 7 6 4.4618 -0.5587 2.0596 8 7 4.6227 -1.8625 1.4146 9 6 5.8451 -2.5320 1.8785 10 6 7.0654 -1.8649 1.2408 11 1 7.0518 -0.7973 1.4599 12 6 7.0295 -2.0673 -0.2168 13 7 7.0018 -2.2234 -1.3417 14 6 8.3423 -2.4862 1.8106 15 6 9.5422 -1.7477 1.2758 16 1 9.4075 -0.9180 0.5977 17 6 10.8119 -2.1307 1.6531 18 7 10.9758 -3.1407 2.4792 19 14 12.2991 -1.2149 0.9907 20 1 11.8481 -0.1265 0.0867 21 1 13.0659 -0.6327 2.1214 22 1 13.1657 -2.1569 0.2379 23 6 3.4318 -2.6852 1.6927 24 6 2.2690 -2.1074 0.8967 25 6 2.0034 -0.6509 1.2302 26 1 1.2523 -0.5954 2.0181 27 1 -0.3633 0.5463 0.8704 28 1 -0.3633 -1.0270 0.0379 29 1 -0.3634 0.4806 -0.9083 30 1 2.0238 1.7924 -1.0117 31 1 1.4147 2.0262 0.6600 32 1 3.8258 2.1345 0.9682 33 1 4.1119 0.8179 -0.2192 34 1 4.4494 -0.7028 3.1399 35 1 5.3167 0.0663 1.8014 36 1 5.9134 -2.4529 2.9636 37 1 5.8147 -3.5833 1.5922 38 1 8.3270 -2.4152 2.8981 39 1 8.3994 -3.5340 1.5157 40 1 11.8690 -3.4099 2.7449 41 1 3.2019 -2.6532 2.7577 42 1 3.6145 -3.7146 1.3847 43 1 1.3718 -2.6877 1.1115 44 1 2.4957 -2.1900 -0.1663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879569522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = 11.349969 kcal Electronic energy + Delta-G solvation = -22048.365534 eV Core-core repulsion = 18999.365209 eV Total energy + Delta-G solvation = -3049.000324 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16359 -38.88031 -37.22287 -35.52703 -34.02338 -33.77874 -31.98909 -29.77163 -28.55562 -26.51160 -25.20573 -24.04803 -23.26729 -22.85430 -22.11459 -19.34588 -18.55773 -18.13141 -17.34898 -16.72389 -16.42493 -16.08441 -15.80170 -15.73566 -14.94603 -14.86466 -14.54331 -14.30162 -14.06453 -13.99155 -13.69769 -13.54665 -13.22326 -13.08505 -13.01940 -12.94390 -12.78558 -12.49216 -12.39805 -12.28051 -12.07784 -11.92499 -11.83990 -11.61060 -11.35532 -11.25698 -11.15913 -10.91860 -10.54197 -9.33620 -9.17052 -8.18322 -6.26107 1.39525 1.42844 1.53269 2.11103 2.19246 2.42553 2.93474 3.07685 3.17321 3.39917 3.60090 3.72784 3.83835 4.12979 4.21399 4.33663 4.34704 4.37678 4.43880 4.56095 4.57762 4.65166 4.65827 4.72619 4.79890 4.81771 4.86037 4.91740 4.99861 5.03172 5.04229 5.12183 5.15310 5.24511 5.31049 5.48565 5.48870 5.64175 5.80979 6.01000 6.11765 6.18773 6.24318 6.27610 6.85397 6.97776 7.42362 8.92772 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.003861 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.898384 B = 7250.925656 C = 7543.958736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.541 5.541 3 C 0.035 3.965 4 C -0.117 4.117 5 C -0.087 4.087 6 H 0.073 0.927 7 C 0.064 3.936 8 N -0.542 5.542 9 C 0.071 3.929 10 C 0.024 3.976 11 H 0.112 0.888 12 C 0.268 3.732 13 N -0.517 5.517 14 C 0.038 3.962 15 C -0.537 4.537 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.947 3.053 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.285 1.285 23 C 0.054 3.946 24 C -0.094 4.094 25 C 0.087 3.913 26 H 0.057 0.943 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.563 7.159 3.524 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.266 5.266 3 C -0.092 4.092 4 C -0.155 4.155 5 C -0.107 4.107 6 H 0.091 0.909 7 C -0.065 4.065 8 N -0.267 5.267 9 C -0.058 4.058 10 C 0.002 3.998 11 H 0.130 0.870 12 C -0.048 4.048 13 N -0.194 5.194 14 C -0.001 4.001 15 C -0.575 4.575 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.212 1.212 23 C -0.074 4.074 24 C -0.132 4.132 25 C -0.021 4.021 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.320 6.640 0.929 22.350 hybrid contribution 0.846 0.578 1.424 1.754 sum -20.474 7.218 2.353 21.837 Atomic orbital electron populations 1.22527 0.87093 1.02299 1.01144 1.65123 1.08872 1.15216 1.37378 1.23308 0.95038 0.89654 1.01210 1.22644 0.96502 0.98570 0.97796 1.20608 0.94361 0.96441 0.99245 0.90860 1.21315 0.97724 0.90838 0.96580 1.62569 1.02125 1.03774 1.58192 1.22113 0.87200 0.97997 0.98534 1.19152 0.97005 1.03120 0.80518 0.87024 1.29345 0.89263 0.90969 0.95262 1.80971 1.12610 1.11297 1.14539 1.18996 0.89419 0.94998 0.96642 1.21570 0.92268 1.16020 1.27650 0.92967 1.25691 1.01789 0.95865 0.95351 1.70034 1.23180 1.28108 1.34980 0.85660 0.79779 0.78752 0.78484 1.19454 1.19722 1.21150 1.22127 0.89713 0.96910 0.98622 1.21052 0.97306 0.94251 1.00626 1.21602 0.95281 0.94588 0.90627 0.92461 0.94802 0.91139 0.91058 0.90352 0.92500 0.89498 0.92756 0.93513 0.90892 0.90914 0.90489 0.94581 0.98032 0.92727 0.93012 0.90611 0.90843 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.37 127.69 1.20 1.47 16 2 N -0.54 -11.10 4.93 -887.10 -4.37 -15.47 16 3 C 0.04 0.66 6.60 86.83 0.57 1.23 16 4 C -0.12 -2.40 6.39 31.83 0.20 -2.20 16 5 C -0.09 -1.72 2.60 -12.07 -0.03 -1.75 16 6 H 0.07 1.21 8.05 -2.39 -0.02 1.19 16 7 C 0.06 1.42 4.75 85.29 0.41 1.82 16 8 N -0.54 -14.07 4.40 -904.66 -3.98 -18.05 16 9 C 0.07 2.02 4.33 86.30 0.37 2.39 16 10 C 0.02 0.88 2.24 -12.60 -0.03 0.85 16 11 H 0.11 3.82 6.71 -2.39 -0.02 3.80 16 12 C 0.27 11.44 13.66 89.44 1.22 12.66 16 13 N -0.52 -24.22 18.54 20.01 0.37 -23.85 16 14 C 0.04 1.77 4.42 29.85 0.13 1.90 16 15 C -0.54 -28.67 8.60 25.60 0.22 -28.45 16 16 H 0.05 2.79 7.59 -2.91 -0.02 2.76 16 17 C 0.01 0.66 5.46 84.66 0.46 1.12 16 18 N -0.92 -53.03 13.29 21.45 0.28 -52.75 16 19 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 C 0.05 1.16 5.56 85.98 0.48 1.64 16 24 C -0.09 -1.97 5.69 29.96 0.17 -1.80 16 25 C 0.09 1.70 2.78 43.54 0.12 1.82 16 26 H 0.06 0.97 7.68 -2.39 -0.02 0.95 16 27 H 0.03 0.45 8.01 -2.39 -0.02 0.44 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.06 0.88 7.96 -2.39 -0.02 0.86 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.05 0.92 7.98 -2.39 -0.02 0.90 16 35 H 0.07 1.75 6.36 -2.39 -0.02 1.74 16 36 H 0.07 1.83 7.92 -2.38 -0.02 1.82 16 37 H 0.08 2.25 7.78 -2.39 -0.02 2.23 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.00 0.06 8.14 -2.38 -0.02 0.05 16 40 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 41 H 0.05 0.95 8.01 -2.38 -0.02 0.93 16 42 H 0.08 1.64 7.81 -2.39 -0.02 1.62 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.05 1.48 7.92 -2.39 -0.02 1.47 16 Total: -1.00 -64.19 347.70 0.77 -63.41 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.95 Total: 8.29 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 5.50 Total: -7.28 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -7.70 Total: -110.12 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -64.19 0.77 -63.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879569522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.763 kcal (2) G-P(sol) polarization free energy of solvation -64.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds