Wall clock time and date at job start Mon Mar 30 2020 01:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 C 1.53004 * 109.46810 * 119.99552 * 2 1 3 5 5 H 1.09006 * 109.47182 * 185.84731 * 4 2 1 6 6 N 1.46899 * 109.47310 * 305.84667 * 4 2 1 7 7 C 1.46897 * 110.99997 * 206.49532 * 6 4 2 8 8 C 1.53004 * 109.46796 * 175.65329 * 7 6 4 9 9 C 1.50696 * 115.55226 * 39.54220 * 8 7 6 10 10 H 1.07993 * 120.00485 * 267.91138 * 9 8 7 11 11 C 1.37881 * 119.99696 * 87.90747 * 9 8 7 12 12 N 1.31518 * 119.99971 * 179.26166 * 11 9 8 13 13 Si 1.86795 * 120.00381 * 359.26670 * 11 9 8 14 14 H 1.48505 * 109.47252 * 91.58051 * 13 11 9 15 15 H 1.48501 * 109.47510 * 211.58129 * 13 11 9 16 16 H 1.48503 * 109.46980 * 331.58118 * 13 11 9 17 17 C 1.53001 * 117.49870 * 253.83218 * 8 7 6 18 18 C 1.53002 * 60.00093 * 252.51316 * 17 8 7 19 19 C 1.50699 * 109.47201 * 65.85174 * 4 2 1 20 20 C 1.39876 * 126.03689 * 275.39490 * 19 4 2 21 21 N 1.30833 * 108.20192 * 179.97438 * 20 19 4 22 22 N 1.40089 * 108.20684 * 359.97438 * 21 20 19 23 23 C 1.46496 * 126.03990 * 179.97438 * 22 21 20 24 24 C 1.34945 * 107.92253 * 0.02562 * 22 21 20 25 25 H 1.08994 * 109.47845 * 303.50557 * 1 2 3 26 26 H 1.09009 * 109.46862 * 63.50370 * 1 2 3 27 27 H 1.09000 * 109.47070 * 183.50067 * 1 2 3 28 28 H 1.08998 * 109.47751 * 239.99399 * 2 1 3 29 29 H 1.08998 * 109.47229 * 64.07997 * 3 2 1 30 30 H 1.09003 * 109.46952 * 184.08455 * 3 2 1 31 31 H 1.08997 * 109.47277 * 304.07903 * 3 2 1 32 32 H 1.00897 * 111.00005 * 330.45355 * 6 4 2 33 33 H 1.09000 * 109.46954 * 295.64854 * 7 6 4 34 34 H 1.08997 * 109.47452 * 55.65290 * 7 6 4 35 35 H 0.96999 * 120.00178 * 180.02562 * 12 11 9 36 36 H 1.09002 * 117.49686 * 0.02562 * 17 8 7 37 37 H 1.08997 * 117.49474 * 145.02196 * 17 8 7 38 38 H 1.09001 * 117.49742 * 252.51029 * 18 17 8 39 39 H 1.09002 * 117.51763 * 107.48161 * 18 17 8 40 40 H 1.07993 * 125.89748 * 0.21206 * 20 19 4 41 41 H 1.08999 * 109.46774 * 90.02607 * 23 22 21 42 42 H 1.08993 * 109.47624 * 210.03030 * 23 22 21 43 43 H 1.09004 * 109.47063 * 330.03160 * 23 22 21 44 44 H 1.08007 * 126.12661 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 3.1249 -0.6314 1.3033 6 7 1.4384 -0.1149 2.4446 7 6 2.3020 -0.2974 3.6188 8 6 1.6968 0.4381 4.8162 9 6 0.1973 0.3543 4.9403 10 1 -0.4249 1.1162 4.4948 11 6 -0.3802 -0.6953 5.6228 12 7 -1.6882 -0.7608 5.7437 13 14 0.6949 -2.0243 6.3760 14 1 1.0215 -1.6612 7.7784 15 1 -0.0317 -3.3192 6.3563 16 1 1.9499 -2.1490 5.5919 17 6 2.3715 1.7369 5.2621 18 6 2.5121 0.4714 6.1105 19 6 1.6593 -2.1776 1.1792 20 6 0.4356 -2.7283 1.5739 21 7 0.4808 -4.0186 1.3620 22 7 1.7363 -4.3302 0.8243 23 6 2.2028 -5.6651 0.4416 24 6 2.4405 -3.1836 0.7223 25 1 -0.3634 0.5672 0.8568 26 1 -0.3633 0.4585 -0.9198 27 1 -0.3633 -1.0257 0.0627 28 1 1.8934 -0.5139 -0.8899 29 1 1.7375 1.9348 0.9243 30 1 3.1275 1.4434 -0.0732 31 1 1.6182 1.9770 -0.8511 32 1 1.2370 0.8620 2.2921 33 1 2.3834 -1.3599 3.8483 34 1 3.2925 0.1056 3.4076 35 1 -2.0945 -1.4990 6.2242 36 1 3.2463 2.0676 4.7021 37 1 1.7308 2.5310 5.6452 38 1 1.9638 0.4331 7.0518 39 1 3.4794 -0.0310 6.1090 40 1 -0.4031 -2.1822 1.9796 41 1 1.9483 -5.8536 -0.6014 42 1 3.2839 -5.7223 0.5678 43 1 1.7231 -6.4126 1.0735 44 1 3.4475 -3.0863 0.3440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886604670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:47 Heat of formation + Delta-G solvation = 85.715779 kcal Electronic energy + Delta-G solvation = -22756.358534 eV Core-core repulsion = 19710.582953 eV Total energy + Delta-G solvation = -3045.775581 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.07324 -39.29504 -37.89225 -34.07006 -33.91984 -33.55356 -31.29123 -28.40370 -27.97088 -27.41314 -26.33374 -24.72490 -23.23308 -21.77913 -21.55427 -20.78894 -19.92783 -18.19692 -17.55702 -17.02040 -16.36556 -16.14423 -15.87678 -15.40985 -15.20992 -15.04579 -14.72796 -14.38026 -14.17779 -13.72585 -13.70888 -13.55713 -13.32377 -13.15986 -13.01546 -12.95271 -12.68675 -12.36968 -12.08527 -11.93607 -11.77129 -11.59637 -11.52876 -11.36887 -11.20022 -10.83745 -10.47003 -10.20544 -10.13831 -9.11517 -8.82495 -8.13741 -6.11886 1.06792 1.32883 1.39845 1.48485 1.83910 2.00402 2.45780 3.20068 3.25772 3.54960 3.82326 4.08501 4.18524 4.21716 4.26683 4.33316 4.44817 4.46780 4.48772 4.53966 4.63203 4.69409 4.72443 4.82049 4.90219 4.93478 4.95770 5.03005 5.09230 5.14720 5.16618 5.21498 5.27601 5.34077 5.47511 5.57268 5.60137 5.71047 5.83163 5.86010 6.30255 6.43857 6.64356 6.87825 6.93900 6.96294 7.53828 9.02544 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.007671 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.819539 B = 3649.218173 C = 4633.777919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 C -0.146 4.146 4 C 0.170 3.830 5 H 0.054 0.946 6 N -0.667 5.667 7 C 0.117 3.883 8 C -0.024 4.024 9 C -0.432 4.432 10 H 0.037 0.963 11 C 0.027 3.973 12 N -0.953 5.953 13 Si 0.930 3.070 14 H -0.280 1.280 15 H -0.318 1.318 16 H -0.241 1.241 17 C -0.161 4.161 18 C -0.205 4.205 19 C -0.226 4.226 20 C 0.071 3.929 21 N -0.354 5.354 22 N -0.384 5.384 23 C 0.096 3.904 24 C 0.054 3.946 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.342 0.658 33 H 0.037 0.963 34 H 0.030 0.970 35 H 0.256 0.744 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.154 0.846 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.871 -2.958 -14.464 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C -0.204 4.204 4 C 0.059 3.941 5 H 0.072 0.928 6 N -0.301 5.301 7 C -0.013 4.013 8 C -0.025 4.025 9 C -0.470 4.470 10 H 0.056 0.944 11 C -0.168 4.168 12 N -0.595 5.595 13 Si 0.759 3.241 14 H -0.206 1.206 15 H -0.246 1.246 16 H -0.165 1.165 17 C -0.198 4.198 18 C -0.243 4.243 19 C -0.238 4.238 20 C -0.114 4.114 21 N -0.177 5.177 22 N -0.167 5.167 23 C -0.044 4.044 24 C -0.093 4.093 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.172 0.828 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.098 0.902 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 13.772 -4.860 -14.222 20.385 hybrid contribution 0.486 0.453 0.819 1.055 sum 14.257 -4.407 -13.403 20.058 Atomic orbital electron populations 1.21698 0.95797 1.01062 1.00832 1.21177 0.95776 0.96192 0.96775 1.21872 1.01338 0.95241 1.01937 1.19760 0.95775 0.88498 0.90019 0.92803 1.60033 1.46720 1.21349 1.01968 1.21391 0.91933 0.97933 0.90028 1.19528 0.92770 0.97888 0.92361 1.20131 0.88893 1.07362 1.30625 0.94433 1.25461 0.95107 0.99289 0.96980 1.70025 1.11274 1.32944 1.45301 0.86067 0.80609 0.78362 0.79093 1.20603 1.24634 1.16454 1.22909 1.02152 0.91044 1.03717 1.22947 1.01278 1.04125 0.95968 1.20247 0.94810 0.97105 1.11664 1.23548 0.99341 0.90624 0.97895 1.77292 1.01939 1.16753 1.21690 1.48762 1.10406 1.08520 1.49020 1.22122 1.01808 0.78500 1.01927 1.22766 0.99553 0.85044 1.01893 0.93579 0.92564 0.94229 0.89956 0.93467 0.91599 0.91529 0.83591 0.94470 0.95262 0.93551 0.87727 0.90527 0.91498 0.88757 0.82841 0.89377 0.86571 0.90212 0.77228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 8.68 71.98 0.63 -3.32 16 2 C -0.08 -1.94 2.65 -10.79 -0.03 -1.97 16 3 C -0.15 -3.01 9.09 71.98 0.65 -2.36 16 4 C 0.17 4.89 2.17 44.17 0.10 4.99 16 5 H 0.05 1.37 7.71 -2.38 -0.02 1.35 16 6 N -0.67 -24.25 4.61 -495.45 -2.29 -26.53 16 7 C 0.12 4.50 5.44 86.31 0.47 4.97 16 8 C -0.02 -1.07 1.10 -52.93 -0.06 -1.13 16 9 C -0.43 -23.99 8.75 25.60 0.22 -23.76 16 10 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 11 C 0.03 1.62 5.47 84.66 0.46 2.09 16 12 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 13 Si 0.93 48.08 25.04 68.60 1.72 49.80 16 14 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 15 H -0.32 -17.28 7.11 99.48 0.71 -16.57 16 16 H -0.24 -11.57 5.37 99.48 0.53 -11.04 16 17 C -0.16 -6.00 9.88 30.60 0.30 -5.69 16 18 C -0.21 -8.33 7.53 30.60 0.23 -8.10 16 19 C -0.23 -7.18 4.61 -20.14 -0.09 -7.27 16 20 C 0.07 2.80 9.86 85.24 0.84 3.64 16 21 N -0.35 -13.58 12.58 -57.03 -0.72 -14.30 16 22 N -0.38 -10.74 4.01 -369.58 -1.48 -12.23 16 23 C 0.10 1.59 11.47 127.77 1.47 3.06 16 24 C 0.05 1.37 11.40 83.54 0.95 2.32 16 25 H 0.05 1.54 7.20 -2.39 -0.02 1.52 16 26 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.04 1.28 5.90 -2.39 -0.01 1.27 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.11 6.37 -2.39 -0.02 1.09 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.34 12.24 5.86 -89.70 -0.53 11.71 16 33 H 0.04 1.61 6.44 -2.39 -0.02 1.60 16 34 H 0.03 0.97 7.75 -2.39 -0.02 0.95 16 35 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 36 H 0.10 3.16 8.08 -2.39 -0.02 3.14 16 37 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.07 2.97 7.13 -2.39 -0.02 2.95 16 39 H 0.09 3.34 8.14 -2.39 -0.02 3.33 16 40 H 0.15 7.05 7.94 -2.91 -0.02 7.02 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 44 H 0.21 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -73.34 345.98 3.95 -69.40 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.27 Total: 27.61 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 6.14 Total: -32.55 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -4.19 Total: -114.26 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.72 Total: 49.80 kcal Total: -73.34 3.95 -69.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886604670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.114 kcal (2) G-P(sol) polarization free energy of solvation -73.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds