Wall clock time and date at job start Mon Mar 30 2020 01:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 N 1.46898 * 109.47587 * 120.00372 * 2 1 3 5 5 C 1.46900 * 110.99774 * 288.57318 * 4 2 1 6 6 C 1.50697 * 109.47400 * 77.30052 * 5 4 2 7 7 H 1.08006 * 120.00040 * 2.79896 * 6 5 4 8 8 C 1.37882 * 120.00428 * 182.80599 * 6 5 4 9 9 N 1.31511 * 120.00189 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99506 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.46843 * 90.00650 * 10 8 6 12 12 H 1.48496 * 109.47213 * 210.00256 * 10 8 6 13 13 H 1.48492 * 109.47412 * 330.00550 * 10 8 6 14 14 C 1.46894 * 111.00329 * 164.61971 * 4 2 1 15 15 C 1.50710 * 109.46796 * 288.98811 * 14 4 2 16 16 C 1.35455 * 126.11669 * 278.20645 * 15 14 4 17 17 C 1.39850 * 107.91424 * 179.90790 * 16 15 14 18 18 N 1.31037 * 108.12952 * 0.35849 * 17 16 15 19 19 N 1.34885 * 126.10971 * 98.52107 * 15 14 4 20 20 C 1.46507 * 126.03372 * 359.95486 * 19 15 14 21 21 C 1.51323 * 109.51087 * 180.21828 * 17 16 15 22 22 C 1.54341 * 105.22373 * 17.44998 * 21 17 16 23 23 C 1.51294 * 142.52357 * 0.79913 * 16 15 14 24 24 H 1.09003 * 109.46606 * 306.12824 * 1 2 3 25 25 H 1.08992 * 109.47045 * 66.13124 * 1 2 3 26 26 H 1.09003 * 109.46691 * 186.13249 * 1 2 3 27 27 H 1.09007 * 109.46768 * 240.00084 * 2 1 3 28 28 H 1.08997 * 109.46912 * 171.71704 * 3 2 1 29 29 H 1.08996 * 109.47004 * 291.71358 * 3 2 1 30 30 H 1.08998 * 109.46628 * 51.71718 * 3 2 1 31 31 H 1.09000 * 109.46909 * 197.29803 * 5 4 2 32 32 H 1.08998 * 109.47236 * 317.30065 * 5 4 2 33 33 H 0.97003 * 119.99856 * 179.97438 * 9 8 6 34 34 H 1.08992 * 109.47543 * 48.98523 * 14 4 2 35 35 H 1.08999 * 109.47362 * 168.99288 * 14 4 2 36 36 H 1.09003 * 109.46231 * 94.46903 * 20 19 15 37 37 H 1.08997 * 109.46986 * 214.47048 * 20 19 15 38 38 H 1.08993 * 109.46858 * 334.47815 * 20 19 15 39 39 H 1.09000 * 110.29220 * 136.38463 * 21 17 16 40 40 H 1.08992 * 110.29516 * 258.50992 * 21 17 16 41 41 H 1.09003 * 110.76885 * 91.75762 * 22 21 17 42 42 H 1.08998 * 110.77035 * 214.98288 * 22 21 17 43 43 H 1.08998 * 110.42951 * 43.18269 * 23 16 15 44 44 H 1.08996 * 110.18420 * 281.12867 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 1.7835 0.1123 2.4053 6 6 0.3332 0.0096 2.8016 7 1 -0.3354 -0.6289 2.2431 8 6 -0.1404 0.7307 3.8771 9 7 -1.4062 0.6414 4.2226 10 14 1.0160 1.8345 4.8435 11 1 1.0145 3.1950 4.2480 12 1 0.5622 1.9117 6.2553 13 1 2.3904 1.2746 4.7952 14 6 3.4419 -1.0353 1.0655 15 6 3.5990 -2.1417 0.0544 16 6 3.4245 -3.4650 0.2852 17 6 3.6637 -4.1459 -0.9127 18 7 3.9784 -3.2625 -1.8279 19 7 3.9442 -1.9918 -1.2409 20 6 4.2322 -0.7231 -1.9148 21 6 3.4730 -5.6314 -0.6965 22 6 2.6693 -5.7500 0.6158 23 6 3.0522 -4.4565 1.3657 24 1 -0.3632 0.6059 0.8301 25 1 -0.3633 0.4158 -0.9397 26 1 -0.3633 -1.0218 0.1098 27 1 1.8933 -0.5139 -0.8901 28 1 3.1199 1.4461 0.1480 29 1 1.8027 1.9118 -0.9547 30 1 1.5609 1.9972 0.8067 31 1 2.4091 -0.2579 3.2175 32 1 2.0315 1.1539 2.2014 33 1 -1.7393 1.1485 4.9795 34 1 3.9974 -0.1583 0.7336 35 1 3.8281 -1.3666 2.0295 36 1 5.3063 -0.5381 -1.8970 37 1 3.8893 -0.7746 -2.9481 38 1 3.7155 0.0870 -1.4003 39 1 2.9115 -6.0648 -1.5241 40 1 4.4390 -6.1256 -0.5941 41 1 1.5987 -5.7763 0.4124 42 1 2.9760 -6.6316 1.1786 43 1 2.2041 -4.0891 1.9434 44 1 3.9049 -4.6372 2.0202 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891693171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:02 Heat of formation + Delta-G solvation = 94.203295 kcal Electronic energy + Delta-G solvation = -22833.168347 eV Core-core repulsion = 19787.760812 eV Total energy + Delta-G solvation = -3045.407535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35898 -38.02204 -36.24501 -32.70327 -32.13708 -31.73006 -29.96331 -28.19841 -26.74516 -26.53618 -25.97401 -24.31671 -22.01617 -21.25550 -19.59366 -19.13636 -18.37799 -16.82703 -16.12283 -15.86181 -15.32866 -14.87554 -14.45297 -14.24542 -13.97975 -13.80896 -13.30273 -12.85939 -12.62245 -12.52836 -12.35241 -12.28476 -12.09174 -11.65654 -11.59626 -11.44822 -11.29726 -11.04565 -10.94406 -10.74776 -10.72236 -10.61190 -10.31760 -10.06159 -9.98402 -9.77066 -9.08406 -8.83187 -8.54485 -7.87743 -7.40986 -6.04894 -3.99465 2.10690 2.63253 3.01334 3.24426 3.33785 3.34516 4.21504 4.40135 4.68904 4.91103 4.97251 5.10241 5.15373 5.20372 5.25201 5.30523 5.40934 5.42149 5.51983 5.64342 5.67103 5.79556 5.84357 5.90124 5.92277 6.06359 6.12235 6.26516 6.36207 6.39210 6.45459 6.48464 6.53136 6.58566 6.79785 6.85482 6.92431 7.02070 7.30178 7.41786 7.62787 7.85279 7.97410 8.04270 8.65770 9.07410 9.56379 11.07399 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019476 B = 0.005749 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.293479 B = 4868.972096 C = 5543.834063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 C -0.187 4.187 4 N -0.509 5.509 5 C 0.154 3.846 6 C -0.501 4.501 7 H 0.091 0.909 8 C 0.068 3.932 9 N -0.899 5.899 10 Si 0.868 3.132 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.112 3.888 15 C 0.120 3.880 16 C -0.239 4.239 17 C 0.044 3.956 18 N -0.290 5.290 19 N -0.374 5.374 20 C 0.099 3.901 21 C -0.028 4.028 22 C -0.116 4.116 23 C -0.039 4.039 24 H 0.098 0.902 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.000 1.000 33 H 0.263 0.737 34 H 0.034 0.966 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.030 -5.714 -8.946 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 C -0.246 4.246 4 N -0.233 5.233 5 C 0.029 3.971 6 C -0.539 4.539 7 H 0.109 0.891 8 C -0.133 4.133 9 N -0.538 5.538 10 Si 0.695 3.305 11 H -0.205 1.205 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.018 4.018 15 C -0.006 4.006 16 C -0.251 4.251 17 C -0.123 4.123 18 N -0.112 5.112 19 N -0.156 5.156 20 C -0.042 4.042 21 C -0.067 4.067 22 C -0.154 4.154 23 C -0.078 4.078 24 H 0.117 0.883 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.017 0.983 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.994 -5.736 -10.054 15.964 hybrid contribution 0.875 1.554 1.196 2.147 sum 11.869 -4.182 -8.858 15.389 Atomic orbital electron populations 1.22077 0.93479 1.03076 1.01387 1.21559 0.97291 0.91006 0.92280 1.22529 1.00035 0.99741 1.02297 1.62190 1.11849 1.45752 1.03524 1.20382 0.98909 0.90926 0.86913 1.21164 0.92641 1.26662 1.13440 0.89073 1.24883 0.94784 0.96746 0.96927 1.69879 1.13606 1.42300 1.28062 0.86981 0.81971 0.81526 0.79987 1.20474 1.21245 1.19339 1.20698 0.92229 0.92681 0.96232 1.20189 0.99229 0.95472 0.85708 1.20423 1.14478 0.91942 0.98253 1.23121 0.99340 0.97164 0.92646 1.76958 1.26418 0.87679 1.20095 1.48365 1.54892 1.05638 1.06735 1.21889 1.01789 0.81644 0.98925 1.20464 1.00783 0.87061 0.98385 1.22336 1.00341 0.97850 0.94861 1.20303 1.01133 0.91287 0.95033 0.88294 0.95121 0.92722 0.92533 0.93854 0.93064 0.90574 0.95839 0.98280 0.92731 0.94811 0.88875 0.91226 0.89616 0.89102 0.90679 0.90033 0.90792 0.90458 0.90216 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 7.91 37.16 0.29 -2.55 16 2 C 0.09 1.59 2.38 -67.71 -0.16 1.43 16 3 C -0.19 -3.05 7.32 37.16 0.27 -2.77 16 4 N -0.51 -10.11 4.37 -229.52 -1.00 -11.11 16 5 C 0.15 3.48 3.56 -4.98 -0.02 3.46 16 6 C -0.50 -13.28 7.46 -34.44 -0.26 -13.54 16 7 H 0.09 2.65 6.29 -52.48 -0.33 2.32 16 8 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 9 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 10 Si 0.87 20.64 27.41 -169.99 -4.66 15.98 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.14 6.62 56.52 0.37 -5.76 16 14 C 0.11 1.90 5.04 -4.97 -0.03 1.87 16 15 C 0.12 2.04 5.58 -82.24 -0.46 1.59 16 16 C -0.24 -4.00 6.78 -104.72 -0.71 -4.71 16 17 C 0.04 0.71 8.10 -82.02 -0.66 0.04 16 18 N -0.29 -4.99 12.58 33.85 0.43 -4.57 16 19 N -0.37 -5.98 3.76 -63.86 -0.24 -6.22 16 20 C 0.10 1.19 10.44 59.85 0.62 1.81 16 21 C -0.03 -0.33 6.76 -26.87 -0.18 -0.51 16 22 C -0.12 -1.32 7.06 -25.32 -0.18 -1.50 16 23 C -0.04 -0.56 6.76 -26.89 -0.18 -0.74 16 24 H 0.10 2.27 5.56 -51.93 -0.29 1.99 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.16 7.92 -51.93 -0.41 0.75 16 27 H 0.06 0.99 5.27 -51.93 -0.27 0.72 16 28 H 0.04 0.64 6.00 -51.93 -0.31 0.32 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.41 6.46 -51.93 -0.34 1.08 16 31 H 0.02 0.54 6.88 -51.93 -0.36 0.19 16 32 H 0.00 -0.01 4.65 -51.93 -0.24 -0.25 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.03 0.52 5.59 -51.93 -0.29 0.23 16 35 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.07 4.27 -51.93 -0.22 0.85 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -30.83 329.84 -8.33 -39.16 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.85 Total: 1.91 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -1.74 Total: -14.34 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.04 Total: -47.68 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.66 Total: 15.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.83 -8.33 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891693171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.361 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds