Wall clock time and date at job start Mon Mar 30 2020 01:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 N 1.46898 * 109.47587 * 120.00372 * 2 1 3 5 5 C 1.46900 * 110.99774 * 288.57318 * 4 2 1 6 6 C 1.50697 * 109.47400 * 77.30052 * 5 4 2 7 7 H 1.08006 * 120.00040 * 2.79896 * 6 5 4 8 8 C 1.37882 * 120.00428 * 182.80599 * 6 5 4 9 9 N 1.31511 * 120.00189 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99506 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.46843 * 90.00650 * 10 8 6 12 12 H 1.48496 * 109.47213 * 210.00256 * 10 8 6 13 13 H 1.48492 * 109.47412 * 330.00550 * 10 8 6 14 14 C 1.46894 * 111.00329 * 164.61971 * 4 2 1 15 15 C 1.50710 * 109.46796 * 288.98811 * 14 4 2 16 16 C 1.35455 * 126.11669 * 278.20645 * 15 14 4 17 17 C 1.39850 * 107.91424 * 179.90790 * 16 15 14 18 18 N 1.31037 * 108.12952 * 0.35849 * 17 16 15 19 19 N 1.34885 * 126.10971 * 98.52107 * 15 14 4 20 20 C 1.46507 * 126.03372 * 359.95486 * 19 15 14 21 21 C 1.51323 * 109.51087 * 180.21828 * 17 16 15 22 22 C 1.54341 * 105.22373 * 17.44998 * 21 17 16 23 23 C 1.51294 * 142.52357 * 0.79913 * 16 15 14 24 24 H 1.09003 * 109.46606 * 306.12824 * 1 2 3 25 25 H 1.08992 * 109.47045 * 66.13124 * 1 2 3 26 26 H 1.09003 * 109.46691 * 186.13249 * 1 2 3 27 27 H 1.09007 * 109.46768 * 240.00084 * 2 1 3 28 28 H 1.08997 * 109.46912 * 171.71704 * 3 2 1 29 29 H 1.08996 * 109.47004 * 291.71358 * 3 2 1 30 30 H 1.08998 * 109.46628 * 51.71718 * 3 2 1 31 31 H 1.09000 * 109.46909 * 197.29803 * 5 4 2 32 32 H 1.08998 * 109.47236 * 317.30065 * 5 4 2 33 33 H 0.97003 * 119.99856 * 179.97438 * 9 8 6 34 34 H 1.08992 * 109.47543 * 48.98523 * 14 4 2 35 35 H 1.08999 * 109.47362 * 168.99288 * 14 4 2 36 36 H 1.09003 * 109.46231 * 94.46903 * 20 19 15 37 37 H 1.08997 * 109.46986 * 214.47048 * 20 19 15 38 38 H 1.08993 * 109.46858 * 334.47815 * 20 19 15 39 39 H 1.09000 * 110.29220 * 136.38463 * 21 17 16 40 40 H 1.08992 * 110.29516 * 258.50992 * 21 17 16 41 41 H 1.09003 * 110.76885 * 91.75762 * 22 21 17 42 42 H 1.08998 * 110.77035 * 214.98288 * 22 21 17 43 43 H 1.08998 * 110.42951 * 43.18269 * 23 16 15 44 44 H 1.08996 * 110.18420 * 281.12867 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 1.7835 0.1123 2.4053 6 6 0.3332 0.0096 2.8016 7 1 -0.3354 -0.6289 2.2431 8 6 -0.1404 0.7307 3.8771 9 7 -1.4062 0.6414 4.2226 10 14 1.0160 1.8345 4.8435 11 1 1.0145 3.1950 4.2480 12 1 0.5622 1.9117 6.2553 13 1 2.3904 1.2746 4.7952 14 6 3.4419 -1.0353 1.0655 15 6 3.5990 -2.1417 0.0544 16 6 3.4245 -3.4650 0.2852 17 6 3.6637 -4.1459 -0.9127 18 7 3.9784 -3.2625 -1.8279 19 7 3.9442 -1.9918 -1.2409 20 6 4.2322 -0.7231 -1.9148 21 6 3.4730 -5.6314 -0.6965 22 6 2.6693 -5.7500 0.6158 23 6 3.0522 -4.4565 1.3657 24 1 -0.3632 0.6059 0.8301 25 1 -0.3633 0.4158 -0.9397 26 1 -0.3633 -1.0218 0.1098 27 1 1.8933 -0.5139 -0.8901 28 1 3.1199 1.4461 0.1480 29 1 1.8027 1.9118 -0.9547 30 1 1.5609 1.9972 0.8067 31 1 2.4091 -0.2579 3.2175 32 1 2.0315 1.1539 2.2014 33 1 -1.7393 1.1485 4.9795 34 1 3.9974 -0.1583 0.7336 35 1 3.8281 -1.3666 2.0295 36 1 5.3063 -0.5381 -1.8970 37 1 3.8893 -0.7746 -2.9481 38 1 3.7155 0.0870 -1.4003 39 1 2.9115 -6.0648 -1.5241 40 1 4.4390 -6.1256 -0.5941 41 1 1.5987 -5.7763 0.4124 42 1 2.9760 -6.6316 1.1786 43 1 2.2041 -4.0891 1.9434 44 1 3.9049 -4.6372 2.0202 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891693171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:01 Heat of formation + Delta-G solvation = 74.521732 kcal Electronic energy + Delta-G solvation = -22834.021803 eV Core-core repulsion = 19787.760812 eV Total energy + Delta-G solvation = -3046.260991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.54451 -39.53590 -37.32069 -34.68322 -33.53209 -32.90672 -31.42946 -29.78292 -28.12857 -27.86769 -27.00590 -25.75913 -23.83996 -22.30378 -20.91415 -20.40516 -19.76322 -18.79403 -17.35591 -17.16921 -16.68004 -16.38033 -15.86076 -15.48147 -15.32926 -15.14966 -14.70878 -14.49985 -14.08244 -13.65750 -13.48792 -13.43677 -13.36959 -13.25062 -13.04505 -12.81172 -12.75876 -12.53214 -12.35692 -12.25186 -11.94165 -11.90700 -11.82212 -11.67197 -11.54039 -11.20847 -11.04037 -10.64986 -10.02628 -9.08275 -8.94876 -8.17272 -6.15617 0.86881 1.36587 1.39740 1.48452 1.55445 1.80075 2.40226 3.13244 3.14941 3.24095 3.68017 3.96358 4.01642 4.06939 4.10148 4.24655 4.28146 4.34005 4.39359 4.42314 4.49065 4.60394 4.67624 4.76789 4.80558 4.84731 4.90360 4.96694 4.97942 5.03529 5.13227 5.14978 5.24986 5.30179 5.36405 5.44087 5.47475 5.65106 5.69863 5.77924 6.04689 6.17254 6.42502 6.70572 6.81960 6.90315 7.43627 8.98458 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019476 B = 0.005749 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.293479 B = 4868.972096 C = 5543.834063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.090 3.910 3 C -0.180 4.180 4 N -0.529 5.529 5 C 0.165 3.835 6 C -0.493 4.493 7 H 0.051 0.949 8 C 0.008 3.992 9 N -0.950 5.950 10 Si 0.933 3.067 11 H -0.269 1.269 12 H -0.290 1.290 13 H -0.249 1.249 14 C 0.118 3.882 15 C 0.105 3.895 16 C -0.264 4.264 17 C 0.034 3.966 18 N -0.314 5.314 19 N -0.375 5.375 20 C 0.090 3.910 21 C -0.025 4.025 22 C -0.107 4.107 23 C -0.042 4.042 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.023 0.977 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.052 0.948 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.670 -5.566 -9.837 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.018 4.018 3 C -0.239 4.239 4 N -0.253 5.253 5 C 0.038 3.962 6 C -0.532 4.532 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.592 5.592 10 Si 0.758 3.242 11 H -0.195 1.195 12 H -0.216 1.216 13 H -0.172 1.172 14 C -0.011 4.011 15 C -0.023 4.023 16 C -0.276 4.276 17 C -0.133 4.133 18 N -0.136 5.136 19 N -0.158 5.158 20 C -0.050 4.050 21 C -0.064 4.064 22 C -0.145 4.145 23 C -0.080 4.080 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.071 0.929 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.661 -5.589 -10.976 18.394 hybrid contribution 0.002 1.440 1.372 1.989 sum 13.662 -4.149 -9.604 17.208 Atomic orbital electron populations 1.21931 0.95368 1.00790 1.01159 1.21540 0.95659 0.92647 0.91984 1.22426 1.00969 0.97626 1.02843 1.61989 1.14337 1.45789 1.03177 1.20130 0.95908 0.91941 0.88185 1.21348 0.94341 1.24980 1.12513 0.93097 1.25703 0.96240 0.98613 0.98268 1.70045 1.15909 1.44160 1.29108 0.85918 0.80541 0.79757 0.77976 1.19467 1.21584 1.17220 1.20633 0.90382 0.93561 0.96572 1.20242 1.00096 0.95604 0.86314 1.20941 1.14633 0.92527 0.99484 1.23812 0.98534 0.98959 0.91960 1.76883 1.27316 0.88434 1.20947 1.48658 1.54360 1.06318 1.06442 1.22184 1.03391 0.80165 0.99285 1.20636 1.02177 0.84805 0.98791 1.22344 0.99962 0.97527 0.94672 1.20385 1.00561 0.92192 0.94860 0.91828 0.92598 0.95286 0.91336 0.91758 0.90429 0.93045 0.95882 0.97131 0.92869 0.92612 0.88982 0.89042 0.88509 0.88721 0.89493 0.87769 0.91538 0.87289 0.92891 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 7.91 71.98 0.57 -4.92 16 2 C 0.09 3.18 2.38 44.92 0.11 3.29 16 3 C -0.18 -5.40 7.32 71.98 0.53 -4.87 16 4 N -0.53 -20.72 4.37 -880.06 -3.85 -24.57 16 5 C 0.16 7.35 3.56 85.56 0.30 7.65 16 6 C -0.49 -26.94 7.46 25.60 0.19 -26.75 16 7 H 0.05 3.13 6.29 -2.91 -0.02 3.12 16 8 C 0.01 0.46 5.47 84.66 0.46 0.92 16 9 N -0.95 -58.23 13.96 21.45 0.30 -57.93 16 10 Si 0.93 42.53 27.41 68.60 1.88 44.41 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.25 -10.43 6.62 99.48 0.66 -9.77 16 14 C 0.12 3.83 5.04 85.56 0.43 4.26 16 15 C 0.10 3.42 5.58 41.45 0.23 3.65 16 16 C -0.26 -8.62 6.78 -19.93 -0.14 -8.75 16 17 C 0.03 1.03 8.10 43.27 0.35 1.38 16 18 N -0.31 -10.35 12.58 -46.80 -0.59 -10.94 16 19 N -0.37 -11.31 3.76 -355.95 -1.34 -12.65 16 20 C 0.09 1.90 10.44 127.77 1.33 3.24 16 21 C -0.03 -0.54 6.76 30.50 0.21 -0.33 16 22 C -0.11 -2.24 7.06 31.51 0.22 -2.02 16 23 C -0.04 -1.16 6.76 30.49 0.21 -0.95 16 24 H 0.06 3.04 5.56 -2.39 -0.01 3.03 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.03 1.27 7.92 -2.39 -0.02 1.25 16 27 H 0.07 2.29 5.27 -2.38 -0.01 2.27 16 28 H 0.06 1.65 6.00 -2.39 -0.01 1.64 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.81 6.46 -2.39 -0.02 1.80 16 31 H 0.02 1.04 6.88 -2.39 -0.02 1.02 16 32 H 0.01 0.47 4.65 -2.39 -0.01 0.46 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.06 1.55 5.59 -2.39 -0.01 1.54 16 35 H 0.09 2.98 7.69 -2.39 -0.02 2.96 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 1.91 4.27 -2.39 -0.01 1.90 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -69.09 329.84 2.36 -66.74 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.95 Total: 19.14 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 5.01 Total: -24.20 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -5.48 Total: -106.09 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.41 kcal Total: -69.09 2.36 -66.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891693171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.259 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds