Wall clock time and date at job start Mon Mar 30 2020 01:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46742 * 2 1 4 4 N 1.46901 * 109.46962 * 119.99673 * 2 1 3 5 5 C 1.46902 * 110.99928 * 169.16649 * 4 2 1 6 6 C 1.50699 * 109.46934 * 293.95903 * 5 4 2 7 7 H 1.07998 * 120.00454 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99534 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00367 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99454 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47454 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47045 * 120.00061 * 10 8 6 13 13 H 1.48506 * 109.47012 * 239.99843 * 10 8 6 14 14 C 1.46897 * 111.00014 * 293.12177 * 4 2 1 15 15 C 1.50704 * 109.46891 * 160.10384 * 14 4 2 16 16 C 1.39869 * 126.03795 * 275.19433 * 15 14 4 17 17 N 1.30839 * 108.19894 * 179.82130 * 16 15 14 18 18 N 1.40084 * 108.20892 * 0.43517 * 17 16 15 19 19 C 1.46496 * 126.03811 * 179.74451 * 18 17 16 20 20 C 1.53785 * 113.61298 * 194.11142 * 19 18 17 21 21 C 1.53948 * 87.01849 * 220.04642 * 20 19 18 22 22 C 1.53778 * 87.11341 * 25.36464 * 21 20 19 23 23 C 1.34948 * 107.92223 * 359.72109 * 18 17 16 24 24 H 1.08997 * 109.47750 * 300.45422 * 1 2 3 25 25 H 1.09000 * 109.47143 * 60.46102 * 1 2 3 26 26 H 1.09007 * 109.46725 * 180.45585 * 1 2 3 27 27 H 1.08991 * 109.47275 * 239.99930 * 2 1 3 28 28 H 1.08996 * 109.47394 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47323 * 299.99995 * 3 2 1 30 30 H 1.09000 * 109.47207 * 60.00101 * 3 2 1 31 31 H 1.09001 * 109.47193 * 53.95258 * 5 4 2 32 32 H 1.08997 * 109.47422 * 173.95364 * 5 4 2 33 33 H 0.97001 * 119.99837 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.47065 * 280.09926 * 14 4 2 35 35 H 1.08991 * 109.47376 * 40.10482 * 14 4 2 36 36 H 1.07999 * 125.90152 * 359.97438 * 16 15 14 37 37 H 1.09000 * 112.84644 * 325.30319 * 19 18 17 38 38 H 1.08995 * 113.61607 * 334.57013 * 20 19 18 39 39 H 1.09002 * 113.61338 * 105.46467 * 20 19 18 40 40 H 1.09008 * 113.53866 * 270.80793 * 21 20 19 41 41 H 1.09006 * 113.74204 * 139.94750 * 21 20 19 42 42 H 1.09007 * 113.61361 * 220.09177 * 22 21 20 43 43 H 1.08997 * 113.61591 * 89.18700 * 22 21 20 44 44 H 1.08003 * 126.12377 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4651 -0.9394 1.1116 6 6 3.7412 -1.9148 -0.0034 7 1 2.9246 -2.3120 -0.5880 8 6 5.0363 -2.3010 -0.2765 9 7 6.0307 -1.8178 0.4357 10 14 5.3784 -3.5107 -1.6582 11 1 4.0986 -3.9023 -2.3016 12 1 6.2649 -2.8741 -2.6653 13 1 6.0439 -4.7180 -1.1057 14 6 1.6874 0.0620 2.4154 15 6 1.7475 -0.8566 3.6086 16 6 0.7178 -1.6894 4.0587 17 7 1.1454 -2.3340 5.1139 18 7 2.4591 -1.9237 5.3750 19 6 3.3076 -2.3959 6.4719 20 6 4.5547 -1.5266 6.7042 21 6 5.3260 -2.8378 6.9405 22 6 4.2659 -3.5280 6.0660 23 6 2.8051 -1.0171 4.4373 24 1 -0.3634 0.5208 0.8858 25 1 -0.3633 0.5067 -0.8941 26 1 -0.3633 -1.0277 0.0082 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.9824 -0.0013 0.9100 32 1 3.8207 -1.3550 2.0544 33 1 6.9418 -2.0893 0.2433 34 1 2.4025 0.8743 2.5458 35 1 0.6824 0.4738 2.3242 36 1 -0.2602 -1.7857 3.6109 37 1 2.7454 -2.6050 7.3820 38 1 4.8793 -0.9829 5.8171 39 1 4.4869 -0.8933 7.5887 40 1 5.3167 -3.1671 7.9796 41 1 6.3245 -2.8446 6.5033 42 1 3.9654 -4.5083 6.4362 43 1 4.5115 -3.5325 5.0040 44 1 3.7560 -0.5106 4.3616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891694832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:19 Heat of formation + Delta-G solvation = 100.395637 kcal Electronic energy + Delta-G solvation = -22287.299359 eV Core-core repulsion = 19242.160345 eV Total energy + Delta-G solvation = -3045.139014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93403 -38.43414 -37.43685 -32.73204 -31.90547 -30.90103 -29.54007 -27.18889 -26.50609 -25.78591 -25.24279 -23.75820 -22.03413 -20.99705 -20.20684 -19.00986 -18.57451 -16.89201 -16.12271 -15.70045 -15.13062 -14.73959 -14.28544 -14.15726 -13.97855 -13.52239 -13.20310 -12.79573 -12.79245 -12.51019 -12.18451 -12.13636 -12.03136 -11.61206 -11.39740 -11.30611 -11.12684 -10.87085 -10.69117 -10.64300 -10.60859 -10.53875 -10.40309 -10.03189 -9.93118 -9.67066 -9.07468 -8.87432 -8.37847 -7.82303 -7.03182 -5.98311 -3.97095 2.36545 2.89397 3.32475 3.34857 3.40197 3.45727 4.26687 4.45344 4.47567 4.71858 4.73322 5.10451 5.22911 5.33233 5.38102 5.49571 5.56477 5.63642 5.66265 5.76042 5.79989 5.83931 5.84637 5.90970 6.06348 6.09958 6.15525 6.19078 6.27989 6.34848 6.40593 6.47987 6.61021 6.72341 6.86879 6.98494 7.17162 7.46012 7.49732 7.51023 7.88843 8.20652 8.22309 8.37773 8.67973 9.11200 9.66288 11.12507 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012224 B = 0.006538 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.018598 B = 4281.373567 C = 5865.529983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 C -0.181 4.181 4 N -0.525 5.525 5 C 0.193 3.807 6 C -0.499 4.499 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.892 3.108 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.286 1.286 14 C 0.128 3.872 15 C -0.208 4.208 16 C 0.063 3.937 17 N -0.312 5.312 18 N -0.367 5.367 19 C 0.140 3.860 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.149 4.149 23 C 0.064 3.936 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.046 0.954 31 H -0.008 1.008 32 H 0.030 0.970 33 H 0.258 0.742 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.176 0.824 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 3.296 10.479 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.239 4.239 4 N -0.249 5.249 5 C 0.068 3.932 6 C -0.537 4.537 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.720 3.280 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.212 1.212 14 C -0.001 4.001 15 C -0.220 4.220 16 C -0.123 4.123 17 N -0.133 5.133 18 N -0.149 5.149 19 C 0.038 3.962 20 C -0.184 4.184 21 C -0.176 4.176 22 C -0.187 4.187 23 C -0.082 4.082 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.009 0.991 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.193 0.807 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.409 1.918 11.531 12.880 hybrid contribution 1.092 0.627 -1.478 1.942 sum -4.317 2.545 10.053 11.232 Atomic orbital electron populations 1.21872 0.96250 1.01592 1.00108 1.21584 0.93649 0.91848 0.95749 1.22446 1.02332 0.98721 1.00451 1.62288 1.19225 1.44229 0.99133 1.19714 0.80743 0.95170 0.97565 1.21239 0.92063 1.24919 1.15516 0.92020 1.24947 0.96288 0.96665 0.96705 1.69959 0.99151 1.44651 1.40306 0.86536 0.78241 0.81073 0.82148 1.19687 1.21210 1.21209 1.20277 0.99584 0.92165 0.88090 1.19976 0.94250 1.06883 1.00894 1.23606 0.99921 0.94892 0.93872 1.77202 0.92691 1.23482 1.19887 1.48439 1.10733 1.32765 1.22958 1.22827 0.88308 0.96467 0.88607 1.23427 0.94280 0.97468 1.03240 1.22718 0.98883 0.95725 1.00238 1.23458 0.95359 0.98026 1.01905 1.22175 0.99871 0.94948 0.91200 0.93419 0.93521 0.92347 0.89157 0.92064 0.93480 0.93540 0.99066 0.95158 0.93249 0.95406 0.91360 0.80731 0.86722 0.88621 0.90292 0.89755 0.90137 0.90648 0.88663 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.17 37.16 0.34 -1.83 16 2 C 0.08 1.53 2.78 -67.71 -0.19 1.34 16 3 C -0.18 -3.12 8.52 37.16 0.32 -2.80 16 4 N -0.52 -11.07 4.36 -229.52 -1.00 -12.07 16 5 C 0.19 4.91 4.43 -4.98 -0.02 4.89 16 6 C -0.50 -13.93 8.36 -34.44 -0.29 -14.22 16 7 H 0.06 1.74 7.19 -52.49 -0.38 1.36 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 10 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.13 2.31 4.04 -4.98 -0.02 2.29 16 15 C -0.21 -3.80 5.16 -105.05 -0.54 -4.34 16 16 C 0.06 1.11 11.96 -17.36 -0.21 0.90 16 17 N -0.31 -5.68 12.58 30.62 0.39 -5.29 16 18 N -0.37 -6.12 3.81 -54.07 -0.21 -6.32 16 19 C 0.14 1.82 5.02 -67.12 -0.34 1.49 16 20 C -0.15 -1.58 7.46 -25.83 -0.19 -1.77 16 21 C -0.14 -1.38 8.09 -25.83 -0.21 -1.59 16 22 C -0.15 -1.90 7.88 -25.92 -0.20 -2.11 16 23 C 0.06 1.12 9.63 -17.22 -0.17 0.96 16 24 H 0.05 0.68 6.30 -51.93 -0.33 0.35 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 1.93 6.63 -51.93 -0.34 1.59 16 28 H 0.06 1.20 6.61 -51.93 -0.34 0.86 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.73 6.74 -51.93 -0.35 0.38 16 31 H -0.01 -0.23 6.44 -51.93 -0.33 -0.56 16 32 H 0.03 0.83 6.66 -51.93 -0.35 0.48 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.03 0.51 7.33 -51.93 -0.38 0.13 16 35 H 0.07 1.10 5.89 -51.93 -0.31 0.79 16 36 H 0.18 2.62 8.06 -52.49 -0.42 2.20 16 37 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.10 1.15 6.32 -51.93 -0.33 0.82 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.17 2.72 6.69 -52.48 -0.35 2.37 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -31.08 345.29 -8.87 -39.95 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.15 Total: 2.73 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.82 Total: -15.35 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.08 Total: -49.34 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.08 -8.87 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891694832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.343 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds