Wall clock time and date at job start Mon Mar 30 2020 01:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46742 * 2 1 4 4 N 1.46901 * 109.46962 * 119.99673 * 2 1 3 5 5 C 1.46902 * 110.99928 * 169.16649 * 4 2 1 6 6 C 1.50699 * 109.46934 * 293.95903 * 5 4 2 7 7 H 1.07998 * 120.00454 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99534 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00367 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99454 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47454 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47045 * 120.00061 * 10 8 6 13 13 H 1.48506 * 109.47012 * 239.99843 * 10 8 6 14 14 C 1.46897 * 111.00014 * 293.12177 * 4 2 1 15 15 C 1.50704 * 109.46891 * 160.10384 * 14 4 2 16 16 C 1.39869 * 126.03795 * 275.19433 * 15 14 4 17 17 N 1.30839 * 108.19894 * 179.82130 * 16 15 14 18 18 N 1.40084 * 108.20892 * 0.43517 * 17 16 15 19 19 C 1.46496 * 126.03811 * 179.74451 * 18 17 16 20 20 C 1.53785 * 113.61298 * 194.11142 * 19 18 17 21 21 C 1.53948 * 87.01849 * 220.04642 * 20 19 18 22 22 C 1.53778 * 87.11341 * 25.36464 * 21 20 19 23 23 C 1.34948 * 107.92223 * 359.72109 * 18 17 16 24 24 H 1.08997 * 109.47750 * 300.45422 * 1 2 3 25 25 H 1.09000 * 109.47143 * 60.46102 * 1 2 3 26 26 H 1.09007 * 109.46725 * 180.45585 * 1 2 3 27 27 H 1.08991 * 109.47275 * 239.99930 * 2 1 3 28 28 H 1.08996 * 109.47394 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47323 * 299.99995 * 3 2 1 30 30 H 1.09000 * 109.47207 * 60.00101 * 3 2 1 31 31 H 1.09001 * 109.47193 * 53.95258 * 5 4 2 32 32 H 1.08997 * 109.47422 * 173.95364 * 5 4 2 33 33 H 0.97001 * 119.99837 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.47065 * 280.09926 * 14 4 2 35 35 H 1.08991 * 109.47376 * 40.10482 * 14 4 2 36 36 H 1.07999 * 125.90152 * 359.97438 * 16 15 14 37 37 H 1.09000 * 112.84644 * 325.30319 * 19 18 17 38 38 H 1.08995 * 113.61607 * 334.57013 * 20 19 18 39 39 H 1.09002 * 113.61338 * 105.46467 * 20 19 18 40 40 H 1.09008 * 113.53866 * 270.80793 * 21 20 19 41 41 H 1.09006 * 113.74204 * 139.94750 * 21 20 19 42 42 H 1.09007 * 113.61361 * 220.09177 * 22 21 20 43 43 H 1.08997 * 113.61591 * 89.18700 * 22 21 20 44 44 H 1.08003 * 126.12377 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4651 -0.9394 1.1116 6 6 3.7412 -1.9148 -0.0034 7 1 2.9246 -2.3120 -0.5880 8 6 5.0363 -2.3010 -0.2765 9 7 6.0307 -1.8178 0.4357 10 14 5.3784 -3.5107 -1.6582 11 1 4.0986 -3.9023 -2.3016 12 1 6.2649 -2.8741 -2.6653 13 1 6.0439 -4.7180 -1.1057 14 6 1.6874 0.0620 2.4154 15 6 1.7475 -0.8566 3.6086 16 6 0.7178 -1.6894 4.0587 17 7 1.1454 -2.3340 5.1139 18 7 2.4591 -1.9237 5.3750 19 6 3.3076 -2.3959 6.4719 20 6 4.5547 -1.5266 6.7042 21 6 5.3260 -2.8378 6.9405 22 6 4.2659 -3.5280 6.0660 23 6 2.8051 -1.0171 4.4373 24 1 -0.3634 0.5208 0.8858 25 1 -0.3633 0.5067 -0.8941 26 1 -0.3633 -1.0277 0.0082 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.9824 -0.0013 0.9100 32 1 3.8207 -1.3550 2.0544 33 1 6.9418 -2.0893 0.2433 34 1 2.4025 0.8743 2.5458 35 1 0.6824 0.4738 2.3242 36 1 -0.2602 -1.7857 3.6109 37 1 2.7454 -2.6050 7.3820 38 1 4.8793 -0.9829 5.8171 39 1 4.4869 -0.8933 7.5887 40 1 5.3167 -3.1671 7.9796 41 1 6.3245 -2.8446 6.5033 42 1 3.9654 -4.5083 6.4362 43 1 4.5115 -3.5325 5.0040 44 1 3.7560 -0.5106 4.3616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891694832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:18 Heat of formation + Delta-G solvation = 81.767213 kcal Electronic energy + Delta-G solvation = -22288.107149 eV Core-core repulsion = 19242.160345 eV Total energy + Delta-G solvation = -3045.946804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.23359 -39.57465 -38.93463 -34.84968 -33.29621 -32.26052 -31.18360 -28.87738 -27.89087 -26.84423 -26.58561 -25.19546 -23.89743 -22.23061 -21.55439 -20.16247 -20.08341 -18.31783 -18.12557 -16.82142 -16.69166 -16.34286 -15.88693 -15.50151 -15.38466 -15.04546 -14.51905 -14.27150 -14.11405 -13.98229 -13.70818 -13.33262 -13.28933 -13.15778 -12.88793 -12.73807 -12.64995 -12.45645 -12.30549 -12.26778 -11.99252 -11.65579 -11.63224 -11.59273 -11.37183 -11.36351 -11.05604 -10.56511 -10.20630 -9.21266 -8.74705 -8.16109 -6.22974 1.00279 1.37205 1.38557 1.51219 1.68305 1.95224 2.41305 3.16183 3.27266 3.50242 3.59037 3.76434 3.79167 3.93450 4.08402 4.22746 4.33836 4.41320 4.51831 4.60556 4.65281 4.66265 4.71363 4.77995 4.87931 4.89411 4.92130 4.96256 4.99836 5.04785 5.11514 5.14281 5.28981 5.35557 5.37153 5.40307 5.55564 5.63909 5.74133 5.84627 6.16905 6.22173 6.56510 6.83208 6.86580 6.95666 7.45298 8.94046 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012224 B = 0.006538 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.018598 B = 4281.373567 C = 5865.529983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.074 3.926 3 C -0.171 4.171 4 N -0.532 5.532 5 C 0.214 3.786 6 C -0.514 4.514 7 H 0.055 0.945 8 C 0.004 3.996 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.266 1.266 12 H -0.277 1.277 13 H -0.282 1.282 14 C 0.134 3.866 15 C -0.229 4.229 16 C 0.059 3.941 17 N -0.331 5.331 18 N -0.365 5.365 19 C 0.127 3.873 20 C -0.140 4.140 21 C -0.121 4.121 22 C -0.156 4.156 23 C 0.056 3.944 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.063 0.937 31 H -0.034 1.034 32 H 0.003 0.997 33 H 0.261 0.739 34 H 0.022 0.978 35 H 0.096 0.904 36 H 0.198 0.802 37 H 0.136 0.864 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.232 3.390 11.053 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.034 4.034 3 C -0.230 4.230 4 N -0.256 5.256 5 C 0.088 3.912 6 C -0.552 4.552 7 H 0.073 0.927 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.782 3.218 11 H -0.191 1.191 12 H -0.203 1.203 13 H -0.208 1.208 14 C 0.006 3.994 15 C -0.241 4.241 16 C -0.127 4.127 17 N -0.152 5.152 18 N -0.147 5.147 19 C 0.026 3.974 20 C -0.178 4.178 21 C -0.159 4.159 22 C -0.195 4.195 23 C -0.091 4.091 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.082 0.918 31 H -0.016 1.016 32 H 0.021 0.979 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.114 0.886 36 H 0.215 0.785 37 H 0.154 0.846 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.510 2.014 12.113 13.898 hybrid contribution 1.436 0.597 -1.626 2.250 sum -5.074 2.611 10.487 11.939 Atomic orbital electron populations 1.21769 0.92857 1.01868 1.02160 1.21658 0.96215 0.92078 0.93477 1.22333 1.00038 0.98102 1.02505 1.62213 1.16061 1.46092 1.01250 1.19275 0.83449 0.93194 0.95301 1.21523 0.92135 1.25420 1.16166 0.92688 1.25768 0.96134 0.98404 0.99098 1.70073 0.99529 1.45832 1.41765 0.85519 0.78243 0.78736 0.79262 1.19065 1.20304 1.20847 1.20290 1.00713 0.91688 0.86723 1.20132 0.94897 1.07775 1.01269 1.23964 1.00701 0.94332 0.93656 1.77137 0.93581 1.24036 1.20457 1.48761 1.10551 1.32064 1.23322 1.23320 0.88624 0.97169 0.88306 1.23403 0.92946 0.97958 1.03533 1.22728 0.97671 0.94206 1.01252 1.23412 0.96984 0.98959 1.00114 1.22312 0.99902 0.95241 0.91657 0.91633 0.91150 0.92982 0.92352 0.95469 0.91067 0.91761 1.01638 0.97852 0.93041 0.95974 0.88627 0.78523 0.84646 0.90500 0.87622 0.86554 0.90391 0.89639 0.92710 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.17 71.98 0.66 -3.01 16 2 C 0.07 2.78 2.78 44.91 0.12 2.91 16 3 C -0.17 -5.78 8.52 71.98 0.61 -5.17 16 4 N -0.53 -22.74 4.36 -880.08 -3.83 -26.58 16 5 C 0.21 11.36 4.43 85.56 0.38 11.74 16 6 C -0.51 -29.60 8.36 25.60 0.21 -29.39 16 7 H 0.05 3.17 7.19 -2.91 -0.02 3.15 16 8 C 0.00 0.20 5.46 84.66 0.46 0.67 16 9 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 10 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 C 0.13 4.82 4.04 85.56 0.35 5.16 16 15 C -0.23 -8.38 5.16 -20.14 -0.10 -8.48 16 16 C 0.06 2.04 11.96 85.24 1.02 3.06 16 17 N -0.33 -11.93 12.58 -57.02 -0.72 -12.64 16 18 N -0.36 -12.23 3.81 -324.99 -1.24 -13.46 16 19 C 0.13 3.20 5.02 45.52 0.23 3.43 16 20 C -0.14 -2.89 7.46 31.18 0.23 -2.65 16 21 C -0.12 -2.24 8.09 31.18 0.25 -1.99 16 22 C -0.16 -4.00 7.88 31.12 0.25 -3.75 16 23 C 0.06 2.02 9.63 83.54 0.80 2.82 16 24 H 0.06 1.63 6.30 -2.39 -0.02 1.62 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.06 2.54 6.63 -2.39 -0.02 2.53 16 28 H 0.03 1.08 6.61 -2.39 -0.02 1.06 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.92 6.74 -2.39 -0.02 1.91 16 31 H -0.03 -1.94 6.44 -2.39 -0.02 -1.96 16 32 H 0.00 0.20 6.66 -2.39 -0.02 0.18 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.02 0.82 7.33 -2.38 -0.02 0.80 16 35 H 0.10 2.87 5.89 -2.39 -0.01 2.86 16 36 H 0.20 5.60 8.06 -2.91 -0.02 5.58 16 37 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.08 1.89 6.32 -2.39 -0.02 1.88 16 39 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.17 5.78 6.69 -2.91 -0.02 5.76 16 Total: -1.00 -69.00 345.29 2.97 -66.03 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.97 Total: 19.71 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 5.48 Total: -24.66 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -5.50 Total: -108.49 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.00 2.97 -66.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891694832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.797 kcal (2) G-P(sol) polarization free energy of solvation -69.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds