Wall clock time and date at job start Mon Mar 30 2020 01:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47201 * 2 1 4 4 N 1.46897 * 109.47520 * 120.00189 * 2 1 3 5 5 C 1.46899 * 111.00145 * 169.57039 * 4 2 1 6 6 C 1.50706 * 109.47295 * 293.95656 * 5 4 2 7 7 H 1.07998 * 120.00038 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99842 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99630 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00070 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46933 * 90.00285 * 10 8 6 12 12 H 1.48497 * 109.47178 * 209.99691 * 10 8 6 13 13 H 1.48497 * 109.47302 * 330.00128 * 10 8 6 14 14 C 1.46897 * 111.00245 * 293.52854 * 4 2 1 15 15 C 1.50698 * 109.47470 * 160.50970 * 14 4 2 16 16 C 1.35318 * 126.12729 * 94.84213 * 15 14 4 17 17 C 1.39868 * 107.91671 * 179.97438 * 16 15 14 18 18 N 1.30831 * 108.20637 * 0.02562 * 17 16 15 19 19 N 1.34946 * 126.12607 * 274.53601 * 15 14 4 20 20 C 1.46506 * 126.03546 * 0.03218 * 19 15 14 21 21 C 1.53781 * 113.61239 * 214.17229 * 20 19 15 22 22 C 1.53951 * 87.02130 * 220.04874 * 21 20 19 23 23 C 1.53787 * 113.61171 * 116.56716 * 20 19 15 24 24 H 1.09008 * 109.46704 * 306.43375 * 1 2 3 25 25 H 1.08990 * 109.47974 * 66.43543 * 1 2 3 26 26 H 1.09000 * 109.47241 * 186.44067 * 1 2 3 27 27 H 1.09006 * 109.46489 * 240.00471 * 2 1 3 28 28 H 1.08996 * 109.47305 * 185.27612 * 3 2 1 29 29 H 1.09007 * 109.47243 * 305.27485 * 3 2 1 30 30 H 1.08997 * 109.47043 * 65.27228 * 3 2 1 31 31 H 1.09008 * 109.46735 * 53.95431 * 5 4 2 32 32 H 1.09001 * 109.47380 * 173.95468 * 5 4 2 33 33 H 0.97000 * 119.99568 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.46729 * 280.51099 * 14 4 2 35 35 H 1.09002 * 109.47100 * 40.50587 * 14 4 2 36 36 H 1.08002 * 126.03649 * 359.97438 * 16 15 14 37 37 H 1.08003 * 125.89687 * 180.02562 * 17 16 15 38 38 H 1.09000 * 112.84978 * 345.37485 * 20 19 15 39 39 H 1.09004 * 113.61522 * 334.57225 * 21 20 19 40 40 H 1.09004 * 113.61085 * 105.47086 * 21 20 19 41 41 H 1.09000 * 113.54210 * 270.81779 * 22 21 20 42 42 H 1.09007 * 113.74425 * 139.94354 * 22 21 20 43 43 H 1.08996 * 113.61216 * 254.52428 * 23 20 19 44 44 H 1.09002 * 113.61347 * 25.43432 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4668 -0.9308 1.1156 6 6 3.7523 -1.9020 -0.0008 7 1 2.9400 -2.3019 -0.5896 8 6 5.0506 -2.2793 -0.2713 9 7 5.2997 -3.1264 -1.2459 10 14 6.4557 -1.5860 0.7457 11 1 6.7050 -2.4697 1.9129 12 1 7.6814 -1.5116 -0.0893 13 1 6.0980 -0.2258 1.2222 14 6 1.6791 0.0569 2.4160 15 6 1.7504 -0.8618 3.6085 16 6 2.8135 -1.0211 4.4304 17 6 2.4661 -1.9614 5.4058 18 7 1.2388 -2.3529 5.1774 19 7 0.7635 -1.6686 4.0513 20 6 -0.5683 -1.8073 3.4569 21 6 -1.6794 -2.0649 4.4884 22 6 -2.2756 -3.0617 3.4779 23 6 -0.8550 -3.2156 2.9095 24 1 -0.3633 0.6104 0.8269 25 1 -0.3635 0.4108 -0.9418 26 1 -0.3634 -1.0212 0.1153 27 1 1.8932 -0.5138 -0.8901 28 1 3.1258 1.4440 -0.0945 29 1 1.6016 1.9829 -0.8390 30 1 1.7558 1.9283 0.9334 31 1 3.9793 0.0108 0.9180 32 1 3.8218 -1.3467 2.0586 33 1 6.2130 -3.3921 -1.4359 34 1 2.3847 0.8774 2.5467 35 1 0.6693 0.4571 2.3255 36 1 3.7624 -0.5121 4.3477 37 1 3.1013 -2.3049 6.2089 38 1 -0.8028 -1.0090 2.7527 39 1 -1.3234 -2.5335 5.4059 40 1 -2.3132 -1.1975 4.6733 41 1 -2.9782 -2.6064 2.7800 42 1 -2.6636 -3.9717 3.9358 43 1 -0.8241 -3.2757 1.8216 44 1 -0.2731 -3.9993 3.3946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891695128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:08 Heat of formation + Delta-G solvation = 102.710085 kcal Electronic energy + Delta-G solvation = -22837.444591 eV Core-core repulsion = 19792.405938 eV Total energy + Delta-G solvation = -3045.038652 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00202 -38.25313 -37.83476 -32.72128 -32.13810 -31.13422 -29.83754 -27.54784 -26.76779 -25.64218 -25.09201 -24.61031 -21.86364 -21.13225 -20.03824 -19.10133 -18.57437 -16.86514 -16.69424 -15.44211 -15.25232 -14.92710 -14.39181 -14.18323 -13.99240 -13.63111 -13.23552 -13.10022 -12.91272 -12.70032 -12.45670 -12.40455 -12.06505 -11.81928 -11.74640 -11.52804 -11.13591 -11.00400 -10.82554 -10.64629 -10.58627 -10.53990 -10.37246 -10.14011 -10.04847 -9.86749 -9.24365 -8.80421 -8.54563 -8.06536 -7.43135 -6.03774 -4.00225 2.25176 2.86534 3.24609 3.30723 3.37475 3.38931 4.43455 4.43762 4.55507 4.70371 4.76393 4.87269 5.08786 5.22478 5.27964 5.31507 5.39655 5.46266 5.60654 5.63276 5.77626 5.79620 5.83832 5.85761 5.90041 5.94233 6.05180 6.07937 6.13215 6.13950 6.19251 6.39318 6.42400 6.55288 6.60539 6.73296 6.96831 7.02898 7.07454 7.45630 7.62133 7.85841 8.01687 8.14773 8.65307 9.03821 9.58431 11.09366 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.006466 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.000812 B = 4329.088023 C = 4932.454376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 C -0.183 4.183 4 N -0.513 5.513 5 C 0.158 3.842 6 C -0.505 4.505 7 H 0.079 0.921 8 C 0.069 3.931 9 N -0.901 5.901 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.106 3.894 15 C 0.115 3.885 16 C -0.275 4.275 17 C 0.042 3.958 18 N -0.304 5.304 19 N -0.347 5.347 20 C 0.141 3.859 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.138 4.138 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.046 0.954 31 H -0.008 1.008 32 H 0.031 0.969 33 H 0.263 0.737 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.139 0.861 37 H 0.176 0.824 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.343 6.612 9.017 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 C -0.242 4.242 4 N -0.237 5.237 5 C 0.032 3.968 6 C -0.543 4.543 7 H 0.097 0.903 8 C -0.132 4.132 9 N -0.540 5.540 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.192 1.192 14 C -0.024 4.024 15 C -0.014 4.014 16 C -0.305 4.305 17 C -0.143 4.143 18 N -0.125 5.125 19 N -0.129 5.129 20 C 0.038 3.962 21 C -0.178 4.178 22 C -0.178 4.178 23 C -0.176 4.176 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.010 0.990 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.193 0.807 38 H 0.137 0.863 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.510 5.292 9.272 17.219 hybrid contribution 2.203 1.556 0.135 2.701 sum -11.307 6.848 9.407 16.224 Atomic orbital electron populations 1.21906 0.96045 1.01689 1.00389 1.21662 0.93768 0.92026 0.95390 1.22469 1.02400 0.98465 1.00835 1.62164 1.18355 1.44280 0.98894 1.20271 0.82534 0.95698 0.98282 1.20980 0.93716 1.24848 1.14767 0.90300 1.24864 0.98504 0.94821 0.95017 1.69891 1.20245 1.33543 1.30359 0.86909 0.82331 0.80166 0.80694 1.20078 1.21343 1.19225 1.20671 1.01076 0.92545 0.88093 1.20999 0.89361 0.94851 0.96144 1.21180 1.00439 1.08441 1.00474 1.23659 0.93667 0.97117 0.99824 1.77137 1.13022 1.19075 1.03310 1.48437 1.11190 1.31311 1.21955 1.22859 0.78001 0.99589 0.95710 1.23334 0.96165 0.99750 0.98593 1.22754 0.96610 0.99844 0.98616 1.23301 0.95990 0.96434 1.01925 0.93880 0.92785 0.92057 0.88012 0.92024 0.92858 0.93469 0.99017 0.95101 0.92744 0.92826 0.90660 0.84348 0.80663 0.86326 0.88465 0.91205 0.89901 0.90748 0.90196 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.03 37.16 0.34 -1.63 16 2 C 0.08 1.39 2.78 -67.72 -0.19 1.21 16 3 C -0.18 -2.84 8.57 37.16 0.32 -2.53 16 4 N -0.51 -10.01 4.36 -229.51 -1.00 -11.01 16 5 C 0.16 3.72 3.50 -4.97 -0.02 3.70 16 6 C -0.50 -14.07 8.92 -34.44 -0.31 -14.38 16 7 H 0.08 2.40 7.43 -52.49 -0.39 2.01 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 10 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 14 C 0.11 1.75 3.69 -4.98 -0.02 1.73 16 15 C 0.12 2.02 5.99 -82.27 -0.49 1.53 16 16 C -0.28 -4.82 9.69 -40.01 -0.39 -5.21 16 17 C 0.04 0.70 12.02 -17.37 -0.21 0.49 16 18 N -0.30 -5.27 11.90 30.62 0.36 -4.91 16 19 N -0.35 -5.79 3.70 -49.90 -0.18 -5.98 16 20 C 0.14 1.92 4.54 -67.11 -0.31 1.61 16 21 C -0.14 -1.58 7.76 -25.83 -0.20 -1.78 16 22 C -0.14 -1.42 8.09 -25.83 -0.21 -1.63 16 23 C -0.14 -1.85 7.88 -25.91 -0.20 -2.06 16 24 H 0.04 0.52 6.53 -51.92 -0.34 0.18 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.10 2.10 6.64 -51.93 -0.34 1.75 16 28 H 0.06 1.08 6.81 -51.93 -0.35 0.73 16 29 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.05 0.66 6.46 -51.93 -0.34 0.32 16 31 H -0.01 -0.18 5.58 -51.92 -0.29 -0.47 16 32 H 0.03 0.76 6.03 -51.93 -0.31 0.45 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.05 0.87 7.20 -51.93 -0.37 0.50 16 35 H 0.08 1.07 5.12 -51.93 -0.27 0.80 16 36 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.18 2.26 8.06 -52.48 -0.42 1.84 16 38 H 0.12 1.48 7.06 -51.93 -0.37 1.11 16 39 H 0.10 1.23 7.64 -51.93 -0.40 0.84 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -31.33 342.13 -8.71 -40.04 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.16 Total: 3.59 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.98 Total: -17.04 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.05 Total: -48.67 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.33 -8.71 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891695128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.751 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds