Wall clock time and date at job start Mon Mar 30 2020 02:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47195 * 2 1 4 4 C 1.36934 * 120.00183 * 267.50327 * 3 2 1 5 5 H 1.08005 * 119.99763 * 318.11963 * 4 3 2 6 6 C 1.38805 * 120.00422 * 138.11218 * 4 3 2 7 7 N 1.31625 * 120.00211 * 344.21685 * 6 4 3 8 8 Si 1.86803 * 120.00268 * 164.21354 * 6 4 3 9 9 H 1.48501 * 109.46882 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46878 * 120.00084 * 8 6 4 11 11 H 1.48496 * 109.47178 * 240.00091 * 8 6 4 12 12 C 1.46504 * 120.00000 * 87.50352 * 3 2 1 13 13 C 1.50698 * 109.47083 * 89.99953 * 12 3 2 14 14 C 1.35313 * 126.03645 * 260.02163 * 13 12 3 15 15 N 1.34946 * 107.74360 * 180.02562 * 14 13 12 16 16 C 1.46505 * 126.03832 * 179.97438 * 15 14 13 17 17 N 1.40083 * 107.92652 * 0.24128 * 15 14 13 18 18 C 1.30837 * 108.20232 * 359.59201 * 17 15 14 19 19 C 1.50709 * 125.89704 * 180.14625 * 18 17 15 20 20 C 1.54265 * 110.03177 * 57.46654 * 19 18 17 21 21 C 1.54889 * 104.19336 * 217.10244 * 20 19 18 22 22 C 1.54885 * 102.74882 * 37.95057 * 21 20 19 23 23 C 1.53878 * 110.02894 * 300.30003 * 19 18 17 24 24 H 1.09006 * 109.47209 * 300.00349 * 1 2 3 25 25 H 1.09006 * 109.47124 * 60.00019 * 1 2 3 26 26 H 1.08993 * 109.47574 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47252 * 239.99728 * 2 1 3 28 28 H 1.08998 * 109.46448 * 119.99519 * 2 1 3 29 29 H 0.96996 * 120.00321 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47119 * 329.99206 * 12 3 2 31 31 H 1.09000 * 109.46974 * 210.00224 * 12 3 2 32 32 H 1.08002 * 126.13141 * 359.97438 * 14 13 12 33 33 H 1.08994 * 109.47117 * 90.00138 * 16 15 14 34 34 H 1.08995 * 109.46910 * 209.99762 * 16 15 14 35 35 H 1.08997 * 109.46854 * 330.00043 * 16 15 14 36 36 H 1.09004 * 110.01449 * 178.91204 * 19 18 17 37 37 H 1.08992 * 110.48778 * 335.78692 * 20 19 18 38 38 H 1.09003 * 110.48243 * 98.42759 * 20 19 18 39 39 H 1.08994 * 110.76086 * 279.62812 * 21 20 19 40 40 H 1.09001 * 110.74938 * 156.25912 * 21 20 19 41 41 H 1.09007 * 110.48458 * 203.38017 * 22 21 20 42 42 H 1.08997 * 110.60563 * 80.78866 * 22 21 20 43 43 H 1.08999 * 110.03066 * 238.56792 * 23 19 18 44 44 H 1.08997 * 110.03623 * 359.95348 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2953 2.0095 -1.1847 5 1 2.8060 1.4757 -1.9726 6 6 1.9197 3.3324 -1.3732 7 7 1.0411 3.8885 -0.5662 8 14 2.6612 4.3237 -2.7722 9 1 3.6155 3.4743 -3.5291 10 1 1.5800 4.7831 -3.6806 11 1 3.3769 5.5015 -2.2193 12 6 2.2105 2.0902 1.2676 13 6 3.6146 1.8602 1.7641 14 6 3.9870 0.9741 2.7165 15 7 5.3237 1.0749 2.8719 16 6 6.1442 0.2968 3.8034 17 7 5.7873 2.0591 1.9895 18 6 4.7629 2.5251 1.3222 19 6 4.8112 3.5977 0.2646 20 6 5.7701 3.1791 -0.8691 21 6 6.4634 4.4996 -1.2870 22 6 6.6581 5.2267 0.0666 23 6 5.3758 4.8996 0.8596 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.7784 4.8129 -0.6981 30 1 1.4988 1.7171 2.0041 31 1 2.0493 3.1574 1.1149 32 1 3.3317 0.3066 3.2564 33 1 6.4857 -0.6146 3.3128 34 1 7.0062 0.8891 4.1102 35 1 5.5511 0.0371 4.6802 36 1 3.8124 3.7724 -0.1355 37 1 6.5044 2.4621 -0.5024 38 1 5.2113 2.7602 -1.7060 39 1 5.8211 5.0806 -1.9488 40 1 7.4250 4.2983 -1.7591 41 1 6.7474 6.3022 -0.0874 42 1 7.5361 4.8424 0.5857 43 1 4.6514 5.7063 0.7475 44 1 5.6141 4.7560 1.9135 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891779318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:04 Heat of formation + Delta-G solvation = 82.736541 kcal Electronic energy + Delta-G solvation = -23282.707847 eV Core-core repulsion = 20236.803076 eV Total energy + Delta-G solvation = -3045.904770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55444 -37.33274 -35.79176 -32.77665 -31.75735 -30.39576 -28.88052 -28.18965 -28.07160 -26.19683 -24.36646 -23.17831 -20.93990 -20.44084 -20.09479 -19.40070 -17.98179 -16.74658 -15.86304 -15.23361 -14.87200 -14.64614 -14.54703 -13.82975 -13.70887 -13.15574 -12.88892 -12.79417 -12.68593 -12.40316 -12.27043 -11.99160 -11.52513 -11.13496 -10.95920 -10.78148 -10.71480 -10.62354 -10.52824 -10.46999 -10.36639 -10.20092 -10.06295 -9.94849 -9.72306 -9.60330 -9.46864 -8.42343 -8.37604 -7.49228 -6.42234 -5.71515 -3.33016 2.58071 3.13642 3.36300 3.46526 3.47671 3.63718 4.51803 4.92351 5.21292 5.25873 5.29422 5.35464 5.39659 5.46861 5.54785 5.71565 5.79464 6.01778 6.09540 6.14598 6.17343 6.21127 6.30660 6.38104 6.39792 6.43101 6.52287 6.58661 6.59123 6.70353 6.75207 6.81993 6.90086 6.92959 7.07189 7.18168 7.28158 7.34994 7.58643 7.68218 7.83043 7.90105 8.52569 8.65301 9.28568 9.87726 10.51361 11.28015 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.010744 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.753132 B = 2605.546120 C = 4399.315353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 N -0.577 5.577 4 C -0.242 4.242 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.887 5.887 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.213 3.787 13 C -0.209 4.209 14 C 0.024 3.976 15 N -0.395 5.395 16 C 0.113 3.887 17 N -0.312 5.312 18 C 0.112 3.888 19 C -0.019 4.019 20 C -0.109 4.109 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.027 0.973 27 H 0.039 0.961 28 H 0.026 0.974 29 H 0.254 0.746 30 H 0.027 0.973 31 H 0.100 0.900 32 H 0.158 0.842 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 -2.993 6.041 10.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 N -0.297 5.297 4 C -0.373 4.373 5 H 0.072 0.928 6 C -0.181 4.181 7 N -0.530 5.530 8 Si 0.701 3.299 9 H -0.196 1.196 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.086 3.914 13 C -0.223 4.223 14 C -0.120 4.120 15 N -0.179 5.179 16 C -0.030 4.030 17 N -0.134 5.134 18 C -0.054 4.054 19 C -0.039 4.039 20 C -0.147 4.147 21 C -0.165 4.165 22 C -0.156 4.156 23 C -0.153 4.153 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.118 0.882 32 H 0.176 0.824 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.142 0.858 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.683 -2.885 6.343 11.134 hybrid contribution -0.539 0.275 -0.659 0.895 sum 8.144 -2.611 5.684 10.269 Atomic orbital electron populations 1.22270 0.99818 0.98054 1.01877 1.20803 0.91696 0.87770 0.97754 1.43731 1.74284 1.09822 1.01874 1.18966 1.30332 0.94903 0.93076 0.92821 1.25168 0.96392 0.99349 0.97206 1.69930 1.30838 1.13221 1.38998 0.86758 0.79096 0.81099 0.82942 1.19625 1.21912 1.20460 1.19279 0.85575 1.00911 0.85654 1.21531 1.00269 1.00426 1.00047 1.22205 0.85027 1.02472 1.02302 1.48213 1.05526 1.31651 1.32487 1.21577 0.95612 0.94754 0.91043 1.77109 1.22977 1.05863 1.07498 1.22018 0.90309 0.97033 0.96054 1.20516 1.02943 0.89439 0.91007 1.22350 0.97620 0.96600 0.98151 1.22538 0.99814 0.97173 0.97001 1.22307 0.98052 0.99156 0.96116 1.22204 0.96540 0.97238 0.99359 0.93901 0.92659 0.95438 0.94233 0.95518 0.93604 0.95449 0.88229 0.82420 0.91920 0.90268 0.90466 0.85799 0.91901 0.91072 0.91851 0.92162 0.92511 0.91988 0.92058 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 10.24 37.16 0.38 -2.83 16 2 C 0.15 3.10 6.39 -4.04 -0.03 3.08 16 3 N -0.58 -13.94 2.38 -174.61 -0.42 -14.35 16 4 C -0.24 -6.32 8.67 -15.06 -0.13 -6.45 16 5 H 0.05 1.45 7.88 -52.48 -0.41 1.04 16 6 C 0.02 0.49 3.33 -17.43 -0.06 0.43 16 7 N -0.89 -24.24 11.43 55.49 0.63 -23.61 16 8 Si 0.87 20.76 28.02 -169.99 -4.76 16.00 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.21 4.94 5.27 -5.19 -0.03 4.91 16 13 C -0.21 -4.47 5.68 -105.06 -0.60 -5.06 16 14 C 0.02 0.44 11.40 -17.23 -0.20 0.24 16 15 N -0.39 -6.87 4.01 -68.16 -0.27 -7.14 16 16 C 0.11 1.31 11.47 59.85 0.69 2.00 16 17 N -0.31 -6.32 12.32 33.67 0.41 -5.90 16 18 C 0.11 2.40 5.45 -82.40 -0.45 1.95 16 19 C -0.02 -0.40 3.22 -90.65 -0.29 -0.69 16 20 C -0.11 -2.15 6.35 -25.07 -0.16 -2.31 16 21 C -0.13 -2.17 6.91 -24.74 -0.17 -2.34 16 22 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 16 23 C -0.12 -2.14 6.45 -25.61 -0.17 -2.30 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.84 8.02 -51.93 -0.42 0.42 16 28 H 0.03 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 31 H 0.10 2.60 5.21 -51.93 -0.27 2.33 16 32 H 0.16 2.36 8.06 -52.49 -0.42 1.93 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.12 2.94 3.19 -51.93 -0.17 2.78 16 37 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 38 H 0.07 1.51 7.54 -51.93 -0.39 1.11 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 1.12 7.66 -51.93 -0.40 0.72 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -29.04 346.38 -8.06 -37.10 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.50 Total: 4.14 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.38 Total: -11.46 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.36 Total: -51.00 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.76 Total: 16.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.04 -8.06 -37.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891779318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.839 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds