Wall clock time and date at job start Mon Mar 30 2020 02:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47195 * 2 1 4 4 C 1.36934 * 120.00183 * 267.50327 * 3 2 1 5 5 H 1.08005 * 119.99763 * 318.11963 * 4 3 2 6 6 C 1.38805 * 120.00422 * 138.11218 * 4 3 2 7 7 N 1.31625 * 120.00211 * 344.21685 * 6 4 3 8 8 Si 1.86803 * 120.00268 * 164.21354 * 6 4 3 9 9 H 1.48501 * 109.46882 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46878 * 120.00084 * 8 6 4 11 11 H 1.48496 * 109.47178 * 240.00091 * 8 6 4 12 12 C 1.46504 * 120.00000 * 87.50352 * 3 2 1 13 13 C 1.50698 * 109.47083 * 89.99953 * 12 3 2 14 14 C 1.35313 * 126.03645 * 260.02163 * 13 12 3 15 15 N 1.34946 * 107.74360 * 180.02562 * 14 13 12 16 16 C 1.46505 * 126.03832 * 179.97438 * 15 14 13 17 17 N 1.40083 * 107.92652 * 0.24128 * 15 14 13 18 18 C 1.30837 * 108.20232 * 359.59201 * 17 15 14 19 19 C 1.50709 * 125.89704 * 180.14625 * 18 17 15 20 20 C 1.54265 * 110.03177 * 57.46654 * 19 18 17 21 21 C 1.54889 * 104.19336 * 217.10244 * 20 19 18 22 22 C 1.54885 * 102.74882 * 37.95057 * 21 20 19 23 23 C 1.53878 * 110.02894 * 300.30003 * 19 18 17 24 24 H 1.09006 * 109.47209 * 300.00349 * 1 2 3 25 25 H 1.09006 * 109.47124 * 60.00019 * 1 2 3 26 26 H 1.08993 * 109.47574 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47252 * 239.99728 * 2 1 3 28 28 H 1.08998 * 109.46448 * 119.99519 * 2 1 3 29 29 H 0.96996 * 120.00321 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47119 * 329.99206 * 12 3 2 31 31 H 1.09000 * 109.46974 * 210.00224 * 12 3 2 32 32 H 1.08002 * 126.13141 * 359.97438 * 14 13 12 33 33 H 1.08994 * 109.47117 * 90.00138 * 16 15 14 34 34 H 1.08995 * 109.46910 * 209.99762 * 16 15 14 35 35 H 1.08997 * 109.46854 * 330.00043 * 16 15 14 36 36 H 1.09004 * 110.01449 * 178.91204 * 19 18 17 37 37 H 1.08992 * 110.48778 * 335.78692 * 20 19 18 38 38 H 1.09003 * 110.48243 * 98.42759 * 20 19 18 39 39 H 1.08994 * 110.76086 * 279.62812 * 21 20 19 40 40 H 1.09001 * 110.74938 * 156.25912 * 21 20 19 41 41 H 1.09007 * 110.48458 * 203.38017 * 22 21 20 42 42 H 1.08997 * 110.60563 * 80.78866 * 22 21 20 43 43 H 1.08999 * 110.03066 * 238.56792 * 23 19 18 44 44 H 1.08997 * 110.03623 * 359.95348 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2953 2.0095 -1.1847 5 1 2.8060 1.4757 -1.9726 6 6 1.9197 3.3324 -1.3732 7 7 1.0411 3.8885 -0.5662 8 14 2.6612 4.3237 -2.7722 9 1 3.6155 3.4743 -3.5291 10 1 1.5800 4.7831 -3.6806 11 1 3.3769 5.5015 -2.2193 12 6 2.2105 2.0902 1.2676 13 6 3.6146 1.8602 1.7641 14 6 3.9870 0.9741 2.7165 15 7 5.3237 1.0749 2.8719 16 6 6.1442 0.2968 3.8034 17 7 5.7873 2.0591 1.9895 18 6 4.7629 2.5251 1.3222 19 6 4.8112 3.5977 0.2646 20 6 5.7701 3.1791 -0.8691 21 6 6.4634 4.4996 -1.2870 22 6 6.6581 5.2267 0.0666 23 6 5.3758 4.8996 0.8596 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.7784 4.8129 -0.6981 30 1 1.4988 1.7171 2.0041 31 1 2.0493 3.1574 1.1149 32 1 3.3317 0.3066 3.2564 33 1 6.4857 -0.6146 3.3128 34 1 7.0062 0.8891 4.1102 35 1 5.5511 0.0371 4.6802 36 1 3.8124 3.7724 -0.1355 37 1 6.5044 2.4621 -0.5024 38 1 5.2113 2.7602 -1.7060 39 1 5.8211 5.0806 -1.9488 40 1 7.4250 4.2983 -1.7591 41 1 6.7474 6.3022 -0.0874 42 1 7.5361 4.8424 0.5857 43 1 4.6514 5.7063 0.7475 44 1 5.6141 4.7560 1.9135 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891779318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:03 Heat of formation + Delta-G solvation = 67.696380 kcal Electronic energy + Delta-G solvation = -23283.360037 eV Core-core repulsion = 20236.803076 eV Total energy + Delta-G solvation = -3046.556961 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.02326 -38.78552 -37.59780 -34.10810 -33.69502 -31.98535 -30.35558 -29.77169 -29.54994 -27.76389 -25.99068 -24.87417 -22.42388 -22.09729 -21.48127 -20.98569 -19.51148 -18.59905 -17.33388 -16.80533 -16.46662 -16.19492 -15.96056 -15.57385 -15.46640 -14.60125 -14.34330 -14.26927 -14.18422 -13.98047 -13.58350 -13.41090 -13.06925 -12.96464 -12.74215 -12.42212 -12.27345 -12.18482 -12.11577 -11.99024 -11.95057 -11.89522 -11.81708 -11.48499 -11.41751 -11.27688 -11.08517 -10.34581 -9.86468 -8.99104 -8.37246 -7.70618 -5.35291 1.14004 1.42443 1.48413 1.54291 1.89657 2.05146 2.55740 3.36387 3.67726 3.81480 3.86163 3.98533 4.05438 4.17135 4.42217 4.50654 4.52432 4.54836 4.67732 4.69271 4.71793 4.72797 4.81424 4.83034 4.85713 4.94704 4.98387 5.07120 5.11938 5.13134 5.20867 5.27180 5.37773 5.38402 5.45595 5.53768 5.64389 5.68608 5.77264 5.92410 6.03675 6.42000 6.63212 7.03872 7.31758 7.98472 8.54880 9.25059 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.010744 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.753132 B = 2605.546120 C = 4399.315353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.142 3.858 3 N -0.590 5.590 4 C -0.240 4.240 5 H 0.038 0.962 6 C -0.007 4.007 7 N -0.911 5.911 8 Si 0.909 3.091 9 H -0.267 1.267 10 H -0.299 1.299 11 H -0.273 1.273 12 C 0.225 3.775 13 C -0.250 4.250 14 C 0.045 3.955 15 N -0.387 5.387 16 C 0.101 3.899 17 N -0.329 5.329 18 C 0.095 3.905 19 C -0.025 4.025 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.109 4.109 23 C -0.113 4.113 24 H 0.035 0.965 25 H 0.025 0.975 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.249 0.751 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.195 0.805 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.027 -4.183 7.436 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 N -0.311 5.311 4 C -0.372 4.372 5 H 0.055 0.945 6 C -0.205 4.205 7 N -0.555 5.555 8 Si 0.737 3.263 9 H -0.192 1.192 10 H -0.227 1.227 11 H -0.198 1.198 12 C 0.098 3.902 13 C -0.263 4.263 14 C -0.102 4.102 15 N -0.170 5.170 16 C -0.039 4.039 17 N -0.152 5.152 18 C -0.070 4.070 19 C -0.045 4.045 20 C -0.143 4.143 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.151 4.151 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.212 0.788 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.305 -4.092 7.751 13.528 hybrid contribution -1.005 0.502 -0.984 1.494 sum 9.300 -3.590 6.767 12.048 Atomic orbital electron populations 1.22105 0.98810 0.99770 0.99998 1.20912 0.92434 0.86413 0.98559 1.43918 1.74791 1.10779 1.01628 1.18905 1.29611 0.95151 0.93489 0.94473 1.25470 0.96669 0.99814 0.98549 1.70029 1.32141 1.13043 1.40286 0.86178 0.78437 0.80453 0.81210 1.19192 1.22666 1.19834 1.18956 0.87181 0.98774 0.85293 1.21366 0.99258 1.03039 1.02657 1.22586 0.85762 1.01160 1.00644 1.48648 1.05889 1.30607 1.31845 1.22053 0.95975 0.94650 0.91217 1.77025 1.22858 1.07029 1.08299 1.22045 0.90771 0.97584 0.96640 1.20435 1.01631 0.90786 0.91655 1.22265 0.97229 0.97896 0.96936 1.22543 1.00581 0.95502 0.97562 1.22277 0.96939 1.00486 0.94979 1.22168 0.97602 0.95897 0.99461 0.94588 0.95604 0.91841 0.94683 0.93304 0.94094 0.95044 0.91681 0.78823 0.90340 0.89396 0.87003 0.88884 0.92131 0.93510 0.92731 0.89513 0.90318 0.90802 0.92881 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.76 10.24 71.98 0.74 -5.02 16 2 C 0.14 5.95 6.39 86.38 0.55 6.50 16 3 N -0.59 -28.91 2.38 -706.34 -1.68 -30.59 16 4 C -0.24 -12.92 8.67 84.03 0.73 -12.19 16 5 H 0.04 2.09 7.88 -2.91 -0.02 2.07 16 6 C -0.01 -0.40 3.33 84.86 0.28 -0.12 16 7 N -0.91 -51.60 11.43 21.65 0.25 -51.35 16 8 Si 0.91 43.76 28.02 68.60 1.92 45.68 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.22 10.58 5.27 85.63 0.45 11.03 16 13 C -0.25 -10.55 5.68 -20.15 -0.11 -10.67 16 14 C 0.04 1.51 11.40 83.54 0.95 2.46 16 15 N -0.39 -12.36 4.01 -369.57 -1.48 -13.84 16 16 C 0.10 1.94 11.47 127.77 1.47 3.41 16 17 N -0.33 -12.86 12.32 -47.38 -0.58 -13.44 16 18 C 0.09 4.05 5.45 43.10 0.23 4.29 16 19 C -0.02 -1.06 3.22 -10.81 -0.03 -1.09 16 20 C -0.10 -4.16 6.35 31.67 0.20 -3.96 16 21 C -0.12 -4.07 6.91 31.88 0.22 -3.85 16 22 C -0.11 -3.33 6.83 31.67 0.22 -3.12 16 23 C -0.11 -4.18 6.45 31.32 0.20 -3.98 16 24 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.03 1.47 8.02 -2.39 -0.02 1.45 16 28 H 0.05 1.81 8.09 -2.39 -0.02 1.79 16 29 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 31 H 0.07 3.54 5.21 -2.39 -0.01 3.53 16 32 H 0.19 4.97 8.06 -2.91 -0.02 4.94 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 4.58 3.19 -2.38 -0.01 4.57 16 37 H 0.06 2.37 7.66 -2.39 -0.02 2.36 16 38 H 0.05 2.03 7.54 -2.39 -0.02 2.01 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 44 H 0.06 2.11 7.66 -2.39 -0.02 2.09 16 Total: -1.00 -64.82 346.38 5.47 -59.35 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.96 Total: 20.51 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 6.09 Total: -16.31 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.50 Total: -109.22 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.92 Total: 45.68 kcal Total: -64.82 5.47 -59.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891779318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.042 kcal (2) G-P(sol) polarization free energy of solvation -64.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds