Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47047 * 2 1 4 4 C 1.34954 * 126.03782 * 125.00491 * 3 2 1 5 5 C 1.35312 * 107.74835 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.03958 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47157 * 106.62399 * 6 5 4 8 8 C 1.46900 * 111.00000 * 167.27670 * 7 6 5 9 9 C 1.50704 * 109.46924 * 196.31585 * 8 7 6 10 10 H 1.08002 * 120.00150 * 2.84890 * 9 8 7 11 11 C 1.37881 * 119.99870 * 182.84462 * 9 8 7 12 12 N 1.31512 * 120.00048 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99841 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47607 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46983 * 120.00222 * 13 11 9 16 16 H 1.48502 * 109.47194 * 240.00188 * 13 11 9 17 17 C 1.46903 * 110.99834 * 291.23088 * 7 6 5 18 18 C 1.53004 * 109.46891 * 294.91404 * 17 7 6 19 19 C 1.53001 * 117.49504 * 243.34240 * 18 17 7 20 20 C 1.52998 * 117.49870 * 174.68502 * 18 17 7 21 21 C 1.39870 * 107.92160 * 359.97438 * 5 4 3 22 22 C 1.50695 * 125.90211 * 179.97438 * 21 5 4 23 23 N 1.30842 * 108.20049 * 359.74204 * 21 5 4 24 24 H 1.08994 * 109.47223 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46679 * 299.99821 * 1 2 3 26 26 H 1.08998 * 109.47074 * 59.99440 * 1 2 3 27 27 H 1.09001 * 109.46679 * 240.00179 * 2 1 3 28 28 H 1.08993 * 109.47126 * 120.00086 * 2 1 3 29 29 H 1.08002 * 126.12191 * 359.94676 * 4 3 2 30 30 H 1.09003 * 109.46787 * 226.62340 * 6 5 4 31 31 H 1.08999 * 109.47194 * 346.61678 * 6 5 4 32 32 H 1.09004 * 109.47089 * 316.31543 * 8 7 6 33 33 H 1.08999 * 109.47097 * 76.31624 * 8 7 6 34 34 H 0.96993 * 120.00497 * 179.97438 * 12 11 9 35 35 H 1.08996 * 109.47319 * 54.90770 * 17 7 6 36 36 H 1.08998 * 109.47137 * 174.91254 * 17 7 6 37 37 H 1.08996 * 115.55213 * 29.01076 * 18 17 7 38 38 H 1.09000 * 117.50420 * 0.02562 * 19 18 17 39 39 H 1.09010 * 117.49839 * 145.01929 * 19 18 17 40 40 H 1.09001 * 117.49728 * 214.97717 * 20 18 17 41 41 H 1.08997 * 117.49882 * 359.97438 * 20 18 17 42 42 H 1.09006 * 109.46915 * 94.44379 * 22 21 5 43 43 H 1.09002 * 109.47398 * 214.44147 * 22 21 5 44 44 H 1.08997 * 109.47069 * 334.44935 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8732 1.9211 0.8939 5 6 3.0722 3.2134 0.5457 6 6 3.9553 4.1997 1.2657 7 7 5.1706 4.4367 0.4753 8 6 5.9088 5.6016 0.9813 9 6 6.9004 6.0580 -0.0578 10 1 6.9430 5.5640 -1.0173 11 6 7.7532 7.1062 0.2165 12 7 7.7015 7.7073 1.3850 13 14 8.9827 7.6713 -1.0711 14 1 8.8404 6.8371 -2.2914 15 1 8.7245 9.0935 -1.4115 16 1 10.3604 7.5330 -0.5343 17 6 6.0247 3.2417 0.4519 18 6 6.5353 2.9521 1.8649 19 6 8.0449 3.0313 2.1005 20 6 7.3443 1.6706 2.0748 21 6 2.3135 3.4721 -0.6005 22 6 2.2366 4.7880 -1.3309 23 7 1.6859 2.3729 -0.9319 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.3183 1.4128 1.7364 30 1 3.4185 5.1392 1.3974 31 1 4.2288 3.7978 2.2413 32 1 5.2095 6.4098 1.1958 33 1 6.4386 5.3278 1.8936 34 1 8.3017 8.4445 1.5782 35 1 5.4478 2.3897 0.0924 36 1 6.8716 3.4134 -0.2124 37 1 5.8818 3.2732 2.6759 38 1 8.6744 3.2902 1.2491 39 1 8.3846 3.4043 3.0669 40 1 7.2233 1.1489 3.0242 41 1 7.5125 1.0337 1.2064 42 1 2.9594 4.7934 -2.1468 43 1 1.2327 4.9217 -1.7340 44 1 2.4621 5.6006 -0.6404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891937542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = 101.084040 kcal Electronic energy + Delta-G solvation = -22109.281610 eV Core-core repulsion = 19064.172447 eV Total energy + Delta-G solvation = -3045.109163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97475 -37.91532 -35.28420 -34.40530 -32.49209 -31.18339 -30.16900 -27.52834 -27.08534 -26.21006 -23.74909 -22.59157 -21.84815 -21.43457 -20.48193 -19.45964 -18.54562 -16.59841 -16.06960 -15.46961 -15.37280 -14.73748 -14.30342 -14.22924 -13.94006 -13.80244 -13.32417 -13.01605 -12.63652 -12.50037 -12.19105 -12.06942 -11.91998 -11.70479 -11.56505 -11.42097 -11.10637 -11.04282 -10.99667 -10.85878 -10.55338 -10.44332 -10.15948 -9.91847 -9.70158 -9.18658 -9.12404 -8.85449 -8.34218 -7.97616 -7.05327 -5.93583 -3.93104 2.17313 2.70524 3.14782 3.35123 3.43101 3.48124 4.35879 4.47265 4.51040 4.82496 4.97513 5.06222 5.16235 5.26490 5.28816 5.38794 5.42437 5.51342 5.57433 5.59633 5.68398 5.72769 5.91539 5.94904 6.00885 6.12699 6.16875 6.33676 6.37537 6.41492 6.44515 6.49343 6.51358 6.58494 6.68731 6.98978 7.10138 7.29902 7.38735 7.52641 7.92482 8.07984 8.22837 8.33699 8.68052 9.15283 9.70303 11.16901 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020013 B = 0.004863 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.752388 B = 5756.588235 C = 6648.305577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 N -0.382 5.382 4 C 0.047 3.953 5 C -0.206 4.206 6 C 0.126 3.874 7 N -0.523 5.523 8 C 0.190 3.810 9 C -0.494 4.494 10 H 0.061 0.939 11 C 0.055 3.945 12 N -0.900 5.900 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.287 1.287 17 C 0.101 3.899 18 C -0.169 4.169 19 C -0.161 4.161 20 C -0.194 4.194 21 C 0.098 3.902 22 C -0.065 4.065 23 N -0.308 5.308 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.164 0.836 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.022 0.978 33 H 0.005 0.995 34 H 0.258 0.742 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 -14.295 0.856 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 N -0.165 5.165 4 C -0.098 4.098 5 C -0.218 4.218 6 C -0.003 4.003 7 N -0.246 5.246 8 C 0.065 3.935 9 C -0.533 4.533 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.540 5.540 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.213 1.213 17 C -0.028 4.028 18 C -0.189 4.189 19 C -0.198 4.198 20 C -0.232 4.232 21 C -0.068 4.068 22 C -0.124 4.124 23 N -0.131 5.131 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.182 0.818 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.023 0.977 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.917 -14.734 -0.356 18.341 hybrid contribution 1.679 0.433 0.999 2.001 sum -9.238 -14.301 0.643 17.037 Atomic orbital electron populations 1.22042 0.94227 1.02350 1.03513 1.21529 0.95687 0.78168 1.03208 1.48399 1.36771 1.09794 1.21537 1.22251 0.96150 0.94692 0.96704 1.20036 1.06124 0.94819 1.00781 1.20317 0.90983 0.96022 0.92970 1.62313 1.05277 1.04566 1.52428 1.19771 0.92468 0.86288 0.94953 1.21164 1.16644 1.15104 1.00408 0.92117 1.24929 0.97533 0.96703 0.95333 1.69960 1.38841 1.23605 1.21601 0.86560 0.81082 0.78535 0.81948 1.19759 1.21175 1.21316 1.21593 0.96473 0.92513 0.92204 1.23004 0.94581 1.00039 1.01291 1.22859 0.95686 0.98412 1.02859 1.22900 1.07271 0.91199 1.01792 1.22223 0.94756 0.94893 0.94975 1.20105 1.01571 0.90646 1.00062 1.77192 1.25430 0.96796 1.13703 0.91148 0.92234 0.91165 0.90325 0.89151 0.81827 0.90949 0.95262 0.95955 0.97746 0.93228 0.92742 0.90629 0.88687 0.88606 0.89758 0.90037 0.89559 0.90239 0.92184 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.10 37.16 0.38 -1.01 16 2 C 0.14 1.27 7.23 -4.04 -0.03 1.25 16 3 N -0.38 -5.29 3.68 -61.37 -0.23 -5.51 16 4 C 0.05 0.67 10.95 -17.22 -0.19 0.48 16 5 C -0.21 -3.39 4.66 -105.06 -0.49 -3.88 16 6 C 0.13 2.26 4.93 -4.98 -0.02 2.23 16 7 N -0.52 -10.87 4.62 -237.51 -1.10 -11.96 16 8 C 0.19 4.75 4.59 -4.97 -0.02 4.73 16 9 C -0.49 -13.55 8.58 -34.44 -0.30 -13.84 16 10 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 11 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 12 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 13 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.10 1.94 5.34 -3.82 -0.02 1.92 16 18 C -0.17 -2.97 3.94 -90.62 -0.36 -3.33 16 19 C -0.16 -2.85 10.09 -26.69 -0.27 -3.12 16 20 C -0.19 -2.87 10.25 -26.69 -0.27 -3.14 16 21 C 0.10 1.65 7.22 -82.41 -0.59 1.05 16 22 C -0.07 -1.00 10.29 36.00 0.37 -0.63 16 23 N -0.31 -5.08 12.42 33.67 0.42 -4.66 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.16 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.07 1.32 7.47 -51.93 -0.39 0.93 16 31 H 0.03 0.51 6.03 -51.93 -0.31 0.19 16 32 H 0.02 0.60 7.76 -51.93 -0.40 0.20 16 33 H 0.00 0.12 6.55 -51.93 -0.34 -0.22 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.05 0.99 6.92 -51.93 -0.36 0.63 16 36 H 0.08 1.61 7.13 -51.93 -0.37 1.24 16 37 H 0.10 1.71 6.24 -51.93 -0.32 1.39 16 38 H 0.10 1.81 8.03 -51.93 -0.42 1.39 16 39 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -30.77 357.56 -9.21 -39.98 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.49 Total: 1.63 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.92 Total: -15.83 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.17 Total: -47.76 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.77 -9.21 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891937542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.061 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds