Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47047 * 2 1 4 4 C 1.34954 * 126.03782 * 125.00491 * 3 2 1 5 5 C 1.35312 * 107.74835 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.03958 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47157 * 106.62399 * 6 5 4 8 8 C 1.46900 * 111.00000 * 167.27670 * 7 6 5 9 9 C 1.50704 * 109.46924 * 196.31585 * 8 7 6 10 10 H 1.08002 * 120.00150 * 2.84890 * 9 8 7 11 11 C 1.37881 * 119.99870 * 182.84462 * 9 8 7 12 12 N 1.31512 * 120.00048 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99841 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47607 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46983 * 120.00222 * 13 11 9 16 16 H 1.48502 * 109.47194 * 240.00188 * 13 11 9 17 17 C 1.46903 * 110.99834 * 291.23088 * 7 6 5 18 18 C 1.53004 * 109.46891 * 294.91404 * 17 7 6 19 19 C 1.53001 * 117.49504 * 243.34240 * 18 17 7 20 20 C 1.52998 * 117.49870 * 174.68502 * 18 17 7 21 21 C 1.39870 * 107.92160 * 359.97438 * 5 4 3 22 22 C 1.50695 * 125.90211 * 179.97438 * 21 5 4 23 23 N 1.30842 * 108.20049 * 359.74204 * 21 5 4 24 24 H 1.08994 * 109.47223 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46679 * 299.99821 * 1 2 3 26 26 H 1.08998 * 109.47074 * 59.99440 * 1 2 3 27 27 H 1.09001 * 109.46679 * 240.00179 * 2 1 3 28 28 H 1.08993 * 109.47126 * 120.00086 * 2 1 3 29 29 H 1.08002 * 126.12191 * 359.94676 * 4 3 2 30 30 H 1.09003 * 109.46787 * 226.62340 * 6 5 4 31 31 H 1.08999 * 109.47194 * 346.61678 * 6 5 4 32 32 H 1.09004 * 109.47089 * 316.31543 * 8 7 6 33 33 H 1.08999 * 109.47097 * 76.31624 * 8 7 6 34 34 H 0.96993 * 120.00497 * 179.97438 * 12 11 9 35 35 H 1.08996 * 109.47319 * 54.90770 * 17 7 6 36 36 H 1.08998 * 109.47137 * 174.91254 * 17 7 6 37 37 H 1.08996 * 115.55213 * 29.01076 * 18 17 7 38 38 H 1.09000 * 117.50420 * 0.02562 * 19 18 17 39 39 H 1.09010 * 117.49839 * 145.01929 * 19 18 17 40 40 H 1.09001 * 117.49728 * 214.97717 * 20 18 17 41 41 H 1.08997 * 117.49882 * 359.97438 * 20 18 17 42 42 H 1.09006 * 109.46915 * 94.44379 * 22 21 5 43 43 H 1.09002 * 109.47398 * 214.44147 * 22 21 5 44 44 H 1.08997 * 109.47069 * 334.44935 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8732 1.9211 0.8939 5 6 3.0722 3.2134 0.5457 6 6 3.9553 4.1997 1.2657 7 7 5.1706 4.4367 0.4753 8 6 5.9088 5.6016 0.9813 9 6 6.9004 6.0580 -0.0578 10 1 6.9430 5.5640 -1.0173 11 6 7.7532 7.1062 0.2165 12 7 7.7015 7.7073 1.3850 13 14 8.9827 7.6713 -1.0711 14 1 8.8404 6.8371 -2.2914 15 1 8.7245 9.0935 -1.4115 16 1 10.3604 7.5330 -0.5343 17 6 6.0247 3.2417 0.4519 18 6 6.5353 2.9521 1.8649 19 6 8.0449 3.0313 2.1005 20 6 7.3443 1.6706 2.0748 21 6 2.3135 3.4721 -0.6005 22 6 2.2366 4.7880 -1.3309 23 7 1.6859 2.3729 -0.9319 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.3183 1.4128 1.7364 30 1 3.4185 5.1392 1.3974 31 1 4.2288 3.7978 2.2413 32 1 5.2095 6.4098 1.1958 33 1 6.4386 5.3278 1.8936 34 1 8.3017 8.4445 1.5782 35 1 5.4478 2.3897 0.0924 36 1 6.8716 3.4134 -0.2124 37 1 5.8818 3.2732 2.6759 38 1 8.6744 3.2902 1.2491 39 1 8.3846 3.4043 3.0669 40 1 7.2233 1.1489 3.0242 41 1 7.5125 1.0337 1.2064 42 1 2.9594 4.7934 -2.1468 43 1 1.2327 4.9217 -1.7340 44 1 2.4621 5.6006 -0.6404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891937542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = 83.111175 kcal Electronic energy + Delta-G solvation = -22110.060972 eV Core-core repulsion = 19064.172447 eV Total energy + Delta-G solvation = -3045.888525 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.13862 -39.42065 -36.65442 -35.54717 -34.51852 -32.23580 -31.53435 -29.13153 -28.53454 -27.61519 -25.39541 -23.61022 -23.14375 -23.09352 -21.69099 -20.84589 -19.84560 -18.29335 -17.54672 -16.97105 -16.60496 -16.31265 -15.78079 -15.61509 -15.24826 -14.92689 -14.75262 -14.19660 -14.10032 -13.81140 -13.68347 -13.27976 -13.01861 -12.97090 -12.90820 -12.77398 -12.67363 -12.54059 -12.38699 -12.32602 -12.22912 -12.12214 -11.81245 -11.45858 -11.14247 -11.06201 -10.63196 -10.48604 -10.01640 -9.18439 -8.73716 -8.09285 -6.16703 1.03818 1.41264 1.43124 1.55175 1.73481 1.87839 2.46193 3.01389 3.22992 3.53557 3.72429 3.92575 4.00447 4.12252 4.13639 4.19328 4.21235 4.38103 4.41062 4.45836 4.58580 4.72820 4.80277 4.82089 4.85525 4.85671 4.90186 4.95807 5.07524 5.11192 5.15195 5.20167 5.24185 5.31652 5.33117 5.39511 5.46998 5.51358 5.76931 5.86591 6.21799 6.29046 6.54455 6.81130 6.90763 7.00215 7.51623 9.00266 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020013 B = 0.004863 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.752388 B = 5756.588235 C = 6648.305577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 N -0.375 5.375 4 C 0.066 3.934 5 C -0.233 4.233 6 C 0.136 3.864 7 N -0.531 5.531 8 C 0.210 3.790 9 C -0.504 4.504 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.932 5.932 13 Si 0.954 3.046 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.281 1.281 17 C 0.110 3.890 18 C -0.182 4.182 19 C -0.186 4.186 20 C -0.150 4.150 21 C 0.079 3.921 22 C -0.061 4.061 23 N -0.330 5.330 24 H 0.100 0.900 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.198 0.802 30 H 0.058 0.942 31 H 0.039 0.961 32 H -0.006 1.006 33 H -0.015 1.015 34 H 0.260 0.740 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 -17.073 1.037 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.004 3.996 3 N -0.157 5.157 4 C -0.082 4.082 5 C -0.245 4.245 6 C 0.007 3.993 7 N -0.254 5.254 8 C 0.084 3.916 9 C -0.543 4.543 10 H 0.071 0.929 11 C -0.190 4.190 12 N -0.574 5.574 13 Si 0.780 3.220 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.018 4.018 18 C -0.201 4.201 19 C -0.223 4.223 20 C -0.187 4.187 21 C -0.087 4.087 22 C -0.120 4.120 23 N -0.154 5.154 24 H 0.119 0.881 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.143 0.857 29 H 0.215 0.785 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.012 0.988 33 H 0.003 0.997 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.163 -17.542 -0.194 20.794 hybrid contribution 1.676 1.193 0.957 2.269 sum -9.487 -16.349 0.763 18.918 Atomic orbital electron populations 1.21997 0.93617 1.03864 1.02038 1.22010 0.96259 0.75971 1.05357 1.48815 1.35821 1.10752 1.20355 1.22653 0.94904 0.93820 0.96796 1.19898 1.07249 0.95787 1.01588 1.20173 0.89689 0.96166 0.93263 1.62187 1.05988 1.04150 1.53027 1.19355 0.91446 0.87200 0.93619 1.21402 1.17241 1.15152 1.00487 0.92940 1.25697 0.99322 0.96805 0.97220 1.70071 1.39806 1.24152 1.23345 0.85559 0.78786 0.78077 0.79555 1.19229 1.20666 1.20703 1.21441 0.95426 0.92034 0.92914 1.22861 0.94261 1.03087 0.99927 1.22822 0.95568 1.01947 1.01945 1.22979 1.02476 0.89581 1.03669 1.22379 0.95374 0.95379 0.95540 1.20036 1.02192 0.90314 0.99422 1.77137 1.25990 0.97297 1.14960 0.88139 0.92925 0.93368 0.89492 0.85660 0.78494 0.92398 0.94304 0.98769 0.99742 0.93073 0.91201 0.93361 0.89019 0.90638 0.90076 0.87224 0.88108 0.91275 0.90586 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.10 71.98 0.73 -1.50 16 2 C 0.12 1.87 7.23 86.38 0.62 2.50 16 3 N -0.37 -9.41 3.68 -348.06 -1.28 -10.69 16 4 C 0.07 1.67 10.95 83.54 0.91 2.58 16 5 C -0.23 -7.48 4.66 -20.15 -0.09 -7.58 16 6 C 0.14 4.90 4.93 85.56 0.42 5.33 16 7 N -0.53 -22.58 4.62 -905.36 -4.19 -26.76 16 8 C 0.21 10.93 4.59 85.56 0.39 11.33 16 9 C -0.50 -28.49 8.58 25.60 0.22 -28.27 16 10 H 0.05 2.99 7.62 -2.91 -0.02 2.97 16 11 C 0.01 0.40 5.46 84.66 0.46 0.87 16 12 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 13 Si 0.95 44.99 29.54 68.60 2.03 47.02 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 C 0.11 4.21 5.34 86.30 0.46 4.67 16 18 C -0.18 -6.20 3.94 -10.79 -0.04 -6.24 16 19 C -0.19 -6.51 10.09 30.62 0.31 -6.21 16 20 C -0.15 -3.96 10.25 30.62 0.31 -3.65 16 21 C 0.08 2.64 7.22 43.10 0.31 2.95 16 22 C -0.06 -1.93 10.29 71.23 0.73 -1.19 16 23 N -0.33 -10.53 12.42 -47.39 -0.59 -11.12 16 24 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.13 1.07 8.07 -2.39 -0.02 1.05 16 29 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.06 2.21 7.47 -2.39 -0.02 2.20 16 31 H 0.04 1.32 6.03 -2.39 -0.01 1.31 16 32 H -0.01 -0.33 7.76 -2.39 -0.02 -0.35 16 33 H -0.02 -0.84 6.55 -2.39 -0.02 -0.86 16 34 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.07 2.43 6.92 -2.39 -0.02 2.42 16 36 H 0.05 2.09 7.13 -2.39 -0.02 2.07 16 37 H 0.09 3.21 6.24 -2.39 -0.01 3.20 16 38 H 0.08 2.92 8.03 -2.39 -0.02 2.91 16 39 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 40 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.10 2.42 8.14 -2.39 -0.02 2.41 16 42 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 44 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 Total: -1.00 -68.29 357.56 2.97 -65.32 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.96 Total: 16.29 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: 5.75 Total: -24.42 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -5.77 Total: -104.21 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -68.29 2.97 -65.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891937542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.431 kcal (2) G-P(sol) polarization free energy of solvation -68.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds