Wall clock time and date at job start Mon Mar 30 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46505 * 109.47068 * 2 1 4 4 C 1.34945 * 126.03301 * 125.25796 * 3 2 1 5 5 C 1.35322 * 107.74314 * 180.14645 * 4 3 2 6 6 C 1.50697 * 126.04232 * 179.87533 * 5 4 3 7 7 N 1.46494 * 109.47328 * 259.70377 * 6 5 4 8 8 C 1.36937 * 119.99717 * 264.15409 * 7 6 5 9 9 H 1.08001 * 120.00237 * 141.23666 * 8 7 6 10 10 C 1.38814 * 120.00150 * 321.22931 * 8 7 6 11 11 N 1.31621 * 119.99696 * 342.25999 * 10 8 7 12 12 Si 1.86797 * 120.00259 * 162.25267 * 10 8 7 13 13 H 1.48506 * 109.47194 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46944 * 120.00187 * 12 10 8 15 15 H 1.48489 * 109.47564 * 240.00289 * 12 10 8 16 16 C 1.46493 * 120.00462 * 84.14955 * 7 6 5 17 17 C 1.55244 * 110.58269 * 240.13318 * 16 7 6 18 18 C 1.54896 * 102.58704 * 203.33710 * 17 16 7 19 19 C 1.54264 * 104.31103 * 37.93063 * 18 17 16 20 20 C 1.53875 * 106.60286 * 336.32175 * 19 18 17 21 21 C 1.39871 * 107.91578 * 359.61512 * 5 4 3 22 22 C 1.50708 * 125.89519 * 180.25810 * 21 5 4 23 23 N 1.30834 * 108.20678 * 0.23990 * 21 5 4 24 24 H 1.08998 * 109.46980 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46946 * 299.99661 * 1 2 3 26 26 H 1.08994 * 109.47234 * 59.99648 * 1 2 3 27 27 H 1.08995 * 109.46651 * 240.00326 * 2 1 3 28 28 H 1.08994 * 109.47234 * 120.00352 * 2 1 3 29 29 H 1.07997 * 126.13321 * 0.02562 * 4 3 2 30 30 H 1.08995 * 109.46930 * 139.69608 * 6 5 4 31 31 H 1.09004 * 109.46892 * 19.70079 * 6 5 4 32 32 H 0.96995 * 119.99651 * 179.97438 * 11 10 8 33 33 H 1.09000 * 110.43278 * 2.71688 * 16 7 6 34 34 H 1.08993 * 110.90002 * 85.04923 * 17 16 7 35 35 H 1.08992 * 110.76212 * 321.56258 * 17 16 7 36 36 H 1.09003 * 110.48638 * 279.18572 * 18 17 16 37 37 H 1.08995 * 110.48550 * 156.67244 * 18 17 16 38 38 H 1.09001 * 110.03517 * 95.61105 * 19 18 17 39 39 H 1.09006 * 110.03086 * 216.99141 * 19 18 17 40 40 H 1.08999 * 110.03299 * 119.28415 * 20 19 18 41 41 H 1.09000 * 110.03265 * 240.67161 * 20 19 18 42 42 H 1.08995 * 109.46729 * 92.96779 * 22 21 5 43 43 H 1.09002 * 109.46938 * 212.96696 * 22 21 5 44 44 H 1.08996 * 109.46948 * 332.96252 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8769 1.9197 0.8911 5 6 3.0715 3.2137 0.5462 6 6 3.9549 4.1999 1.2660 7 7 3.1319 5.0604 2.1194 8 6 2.7204 6.2844 1.6637 9 1 1.7272 6.6406 1.8945 10 6 3.5796 7.0674 0.9051 11 7 4.8724 6.8202 0.9101 12 14 2.9012 8.4719 -0.1229 13 1 1.4272 8.5403 0.0438 14 1 3.5093 9.7509 0.3239 15 1 3.2279 8.2414 -1.5529 16 6 2.7491 4.6116 3.4603 17 6 1.2040 4.5365 3.5904 18 6 0.9875 4.6598 5.1192 19 6 2.0486 5.6834 5.5732 20 6 3.1687 5.6527 4.5185 21 6 2.3126 3.4724 -0.5998 22 6 2.2360 4.7882 -1.3306 23 7 1.6808 2.3747 -0.9281 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.3265 1.4100 1.7304 30 1 4.4855 4.8120 0.5367 31 1 4.6756 3.6608 1.8809 32 1 5.4728 7.3671 0.3798 33 1 3.1977 3.6426 3.6797 34 1 0.8288 3.5813 3.2230 35 1 0.7313 5.3663 3.0652 36 1 1.1515 3.6987 5.6065 37 1 -0.0152 5.0292 5.3339 38 1 1.6093 6.6798 5.6224 39 1 2.4455 5.4021 6.5486 40 1 3.2729 6.6341 4.0559 41 1 4.1098 5.3568 4.9819 42 1 2.9766 4.8033 -2.1301 43 1 1.2398 4.9103 -1.7557 44 1 2.4363 5.6026 -0.6343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892086632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:13 Heat of formation + Delta-G solvation = 81.499604 kcal Electronic energy + Delta-G solvation = -22901.923874 eV Core-core repulsion = 19855.965467 eV Total energy + Delta-G solvation = -3045.958408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47666 -37.56378 -34.87640 -33.83362 -31.27388 -30.70334 -29.52024 -27.79319 -27.11318 -26.49353 -25.16902 -22.75613 -21.95484 -19.95773 -19.70406 -19.13040 -18.47166 -16.45444 -15.96351 -15.28089 -15.01660 -14.71144 -14.16127 -13.88035 -13.53825 -13.16963 -13.06255 -12.72561 -12.50321 -12.33342 -12.24568 -11.85550 -11.66976 -11.33831 -11.21374 -11.04356 -11.02367 -10.77139 -10.55712 -10.51186 -10.30932 -10.22826 -10.04567 -10.00290 -9.65433 -9.51041 -9.38624 -8.46670 -8.36269 -7.48377 -6.43443 -5.74461 -3.30258 2.58510 3.09429 3.35403 3.46372 3.48063 3.64719 4.50583 4.75860 5.07993 5.23525 5.32801 5.39736 5.42848 5.47193 5.53023 5.58226 5.66615 5.86856 5.89324 6.09308 6.18498 6.22609 6.26852 6.29558 6.37469 6.43357 6.48704 6.56315 6.60913 6.66066 6.69436 6.89036 6.91969 7.05538 7.10039 7.17484 7.25950 7.45398 7.60191 7.67710 7.83779 7.90475 8.51205 8.62910 9.27395 9.89079 10.49860 11.26383 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.007981 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.566320 B = 3507.575923 C = 4919.646340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 N -0.389 5.389 4 C 0.026 3.974 5 C -0.210 4.210 6 C 0.214 3.786 7 N -0.568 5.568 8 C -0.239 4.239 9 H 0.059 0.941 10 C 0.015 3.985 11 N -0.887 5.887 12 Si 0.879 3.121 13 H -0.274 1.274 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.177 3.823 17 C -0.132 4.132 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.132 4.132 21 C 0.099 3.901 22 C -0.086 4.086 23 N -0.317 5.317 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.158 0.842 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.254 0.746 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 -9.962 2.375 11.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 N -0.173 5.173 4 C -0.118 4.118 5 C -0.223 4.223 6 C 0.087 3.913 7 N -0.286 5.286 8 C -0.370 4.370 9 H 0.076 0.924 10 C -0.185 4.185 11 N -0.529 5.529 12 Si 0.708 3.292 13 H -0.199 1.199 14 H -0.217 1.217 15 H -0.210 1.210 16 C 0.070 3.930 17 C -0.171 4.171 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.171 4.171 21 C -0.067 4.067 22 C -0.145 4.145 23 N -0.140 5.140 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.175 0.825 30 H 0.121 0.879 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.208 -10.564 1.489 11.871 hybrid contribution 0.159 0.881 0.133 0.905 sum -5.049 -9.683 1.623 11.040 Atomic orbital electron populations 1.22031 0.94560 1.01924 1.03525 1.21411 0.95486 0.78846 1.02564 1.48347 1.37109 1.09373 1.22520 1.22214 0.97403 0.95361 0.96808 1.21518 1.06970 0.94685 0.99148 1.19320 0.89400 0.88924 0.93651 1.43797 1.60396 1.15299 1.09132 1.18904 0.95689 0.93186 1.29183 0.92379 1.25149 0.94653 0.96877 1.01820 1.69956 1.01324 1.40298 1.41343 0.86625 0.79078 0.82713 0.80787 1.19902 1.21715 1.21031 1.21204 0.91655 0.94286 0.85899 1.22918 0.99971 1.00576 0.93671 1.22282 0.97935 0.98349 0.97515 1.22067 0.96995 0.98562 0.98164 1.22517 0.95756 1.03145 0.95723 1.22162 0.94990 0.94144 0.95451 1.20482 1.00763 0.92992 1.00245 1.77094 1.25297 0.97199 1.14424 0.91508 0.92244 0.91311 0.90914 0.89560 0.82515 0.87867 0.95653 0.93586 0.93484 0.93658 0.91179 0.92947 0.93171 0.92822 0.93481 0.89781 0.93849 0.92104 0.92680 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.10 37.16 0.38 -1.48 16 2 C 0.14 1.70 7.23 -4.04 -0.03 1.67 16 3 N -0.39 -6.72 3.68 -61.36 -0.23 -6.94 16 4 C 0.03 0.47 11.36 -17.22 -0.20 0.27 16 5 C -0.21 -4.39 5.67 -105.05 -0.60 -4.98 16 6 C 0.21 4.87 5.24 -5.20 -0.03 4.84 16 7 N -0.57 -13.18 2.45 -164.93 -0.40 -13.59 16 8 C -0.24 -6.02 6.35 -15.06 -0.10 -6.11 16 9 H 0.06 1.52 6.71 -52.49 -0.35 1.17 16 10 C 0.01 0.38 3.94 -17.43 -0.07 0.31 16 11 N -0.89 -23.88 11.41 55.49 0.63 -23.24 16 12 Si 0.88 20.51 28.53 -169.99 -4.85 15.66 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.18 3.63 3.39 -66.08 -0.22 3.41 16 17 C -0.13 -2.50 6.47 -24.54 -0.16 -2.66 16 18 C -0.12 -1.97 6.82 -25.07 -0.17 -2.14 16 19 C -0.12 -1.99 6.80 -25.61 -0.17 -2.16 16 20 C -0.13 -2.61 6.41 -25.61 -0.16 -2.78 16 21 C 0.10 2.12 7.22 -82.40 -0.59 1.52 16 22 C -0.09 -1.80 10.28 36.01 0.37 -1.43 16 23 N -0.32 -6.43 12.42 33.67 0.42 -6.01 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.10 2.64 5.55 -51.93 -0.29 2.35 16 31 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 32 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.05 0.93 7.92 -51.93 -0.41 0.52 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.48 6.63 -51.93 -0.34 1.13 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.93 6.92 -51.93 -0.36 1.57 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.11 2.59 3.67 -51.93 -0.19 2.40 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -28.00 344.66 -8.40 -36.40 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.41 Total: 4.24 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -1.75 Total: -11.72 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.42 Total: -49.78 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.85 Total: 15.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.00 -8.40 -36.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892086632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.899 kcal (2) G-P(sol) polarization free energy of solvation -27.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds