Wall clock time and date at job start Mon Mar 30 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46505 * 109.47068 * 2 1 4 4 C 1.34945 * 126.03301 * 125.25796 * 3 2 1 5 5 C 1.35322 * 107.74314 * 180.14645 * 4 3 2 6 6 C 1.50697 * 126.04232 * 179.87533 * 5 4 3 7 7 N 1.46494 * 109.47328 * 259.70377 * 6 5 4 8 8 C 1.36937 * 119.99717 * 264.15409 * 7 6 5 9 9 H 1.08001 * 120.00237 * 141.23666 * 8 7 6 10 10 C 1.38814 * 120.00150 * 321.22931 * 8 7 6 11 11 N 1.31621 * 119.99696 * 342.25999 * 10 8 7 12 12 Si 1.86797 * 120.00259 * 162.25267 * 10 8 7 13 13 H 1.48506 * 109.47194 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46944 * 120.00187 * 12 10 8 15 15 H 1.48489 * 109.47564 * 240.00289 * 12 10 8 16 16 C 1.46493 * 120.00462 * 84.14955 * 7 6 5 17 17 C 1.55244 * 110.58269 * 240.13318 * 16 7 6 18 18 C 1.54896 * 102.58704 * 203.33710 * 17 16 7 19 19 C 1.54264 * 104.31103 * 37.93063 * 18 17 16 20 20 C 1.53875 * 106.60286 * 336.32175 * 19 18 17 21 21 C 1.39871 * 107.91578 * 359.61512 * 5 4 3 22 22 C 1.50708 * 125.89519 * 180.25810 * 21 5 4 23 23 N 1.30834 * 108.20678 * 0.23990 * 21 5 4 24 24 H 1.08998 * 109.46980 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46946 * 299.99661 * 1 2 3 26 26 H 1.08994 * 109.47234 * 59.99648 * 1 2 3 27 27 H 1.08995 * 109.46651 * 240.00326 * 2 1 3 28 28 H 1.08994 * 109.47234 * 120.00352 * 2 1 3 29 29 H 1.07997 * 126.13321 * 0.02562 * 4 3 2 30 30 H 1.08995 * 109.46930 * 139.69608 * 6 5 4 31 31 H 1.09004 * 109.46892 * 19.70079 * 6 5 4 32 32 H 0.96995 * 119.99651 * 179.97438 * 11 10 8 33 33 H 1.09000 * 110.43278 * 2.71688 * 16 7 6 34 34 H 1.08993 * 110.90002 * 85.04923 * 17 16 7 35 35 H 1.08992 * 110.76212 * 321.56258 * 17 16 7 36 36 H 1.09003 * 110.48638 * 279.18572 * 18 17 16 37 37 H 1.08995 * 110.48550 * 156.67244 * 18 17 16 38 38 H 1.09001 * 110.03517 * 95.61105 * 19 18 17 39 39 H 1.09006 * 110.03086 * 216.99141 * 19 18 17 40 40 H 1.08999 * 110.03299 * 119.28415 * 20 19 18 41 41 H 1.09000 * 110.03265 * 240.67161 * 20 19 18 42 42 H 1.08995 * 109.46729 * 92.96779 * 22 21 5 43 43 H 1.09002 * 109.46938 * 212.96696 * 22 21 5 44 44 H 1.08996 * 109.46948 * 332.96252 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8769 1.9197 0.8911 5 6 3.0715 3.2137 0.5462 6 6 3.9549 4.1999 1.2660 7 7 3.1319 5.0604 2.1194 8 6 2.7204 6.2844 1.6637 9 1 1.7272 6.6406 1.8945 10 6 3.5796 7.0674 0.9051 11 7 4.8724 6.8202 0.9101 12 14 2.9012 8.4719 -0.1229 13 1 1.4272 8.5403 0.0438 14 1 3.5093 9.7509 0.3239 15 1 3.2279 8.2414 -1.5529 16 6 2.7491 4.6116 3.4603 17 6 1.2040 4.5365 3.5904 18 6 0.9875 4.6598 5.1192 19 6 2.0486 5.6834 5.5732 20 6 3.1687 5.6527 4.5185 21 6 2.3126 3.4724 -0.5998 22 6 2.2360 4.7882 -1.3306 23 7 1.6808 2.3747 -0.9281 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.3265 1.4100 1.7304 30 1 4.4855 4.8120 0.5367 31 1 4.6756 3.6608 1.8809 32 1 5.4728 7.3671 0.3798 33 1 3.1977 3.6426 3.6797 34 1 0.8288 3.5813 3.2230 35 1 0.7313 5.3663 3.0652 36 1 1.1515 3.6987 5.6065 37 1 -0.0152 5.0292 5.3339 38 1 1.6093 6.6798 5.6224 39 1 2.4455 5.4021 6.5486 40 1 3.2729 6.6341 4.0559 41 1 4.1098 5.3568 4.9819 42 1 2.9766 4.8033 -2.1301 43 1 1.2398 4.9103 -1.7557 44 1 2.4363 5.6026 -0.6343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892086632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:13 Heat of formation + Delta-G solvation = 67.418073 kcal Electronic energy + Delta-G solvation = -22902.534495 eV Core-core repulsion = 19855.965467 eV Total energy + Delta-G solvation = -3046.569029 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94839 -39.14603 -36.39254 -35.23858 -33.10328 -32.09837 -31.06926 -29.29026 -28.61100 -28.08890 -26.86181 -24.22980 -23.36621 -21.46499 -21.13296 -20.72637 -20.01354 -18.13365 -17.44377 -16.89160 -16.49896 -16.16817 -15.88395 -15.19922 -14.97868 -14.73384 -14.56323 -14.26703 -14.02106 -13.83084 -13.72424 -13.09418 -12.96534 -12.92898 -12.83284 -12.75237 -12.52835 -12.34444 -12.11342 -12.04915 -11.86541 -11.77707 -11.71977 -11.68940 -11.15839 -11.12413 -11.02774 -10.33110 -9.91524 -8.99116 -8.32677 -7.69132 -5.27226 1.13186 1.44868 1.51717 1.57508 1.84010 2.04263 2.58262 3.38311 3.70293 3.86032 4.05074 4.09382 4.10393 4.14223 4.23288 4.39278 4.41907 4.53098 4.70942 4.73315 4.78904 4.80710 4.84352 4.85383 4.95865 4.96878 5.01603 5.05971 5.23550 5.25638 5.27136 5.30629 5.37683 5.40579 5.55106 5.61563 5.68016 5.77123 5.83884 5.94007 6.02644 6.42464 6.65748 7.01012 7.34175 8.04980 8.58340 9.28042 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.007981 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.566320 B = 3507.575923 C = 4919.646340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.126 3.874 3 N -0.378 5.378 4 C 0.047 3.953 5 C -0.242 4.242 6 C 0.224 3.776 7 N -0.579 5.579 8 C -0.227 4.227 9 H 0.043 0.957 10 C -0.019 4.019 11 N -0.914 5.914 12 Si 0.920 3.080 13 H -0.272 1.272 14 H -0.296 1.296 15 H -0.283 1.283 16 C 0.170 3.830 17 C -0.124 4.124 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.129 4.129 21 C 0.075 3.925 22 C -0.084 4.084 23 N -0.334 5.334 24 H 0.103 0.897 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.194 0.806 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.249 0.751 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 -12.644 3.856 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.006 3.994 3 N -0.162 5.162 4 C -0.100 4.100 5 C -0.255 4.255 6 C 0.097 3.903 7 N -0.298 5.298 8 C -0.358 4.358 9 H 0.061 0.939 10 C -0.216 4.216 11 N -0.558 5.558 12 Si 0.749 3.251 13 H -0.197 1.197 14 H -0.223 1.223 15 H -0.209 1.209 16 C 0.063 3.937 17 C -0.164 4.164 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.169 4.169 21 C -0.090 4.090 22 C -0.142 4.142 23 N -0.159 5.159 24 H 0.121 0.879 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.141 0.859 29 H 0.211 0.789 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.322 -13.268 2.964 14.993 hybrid contribution 0.458 1.558 -0.307 1.653 sum -5.864 -11.710 2.658 13.363 Atomic orbital electron populations 1.21986 0.93939 1.03747 1.01724 1.21956 0.96043 0.76248 1.05154 1.48778 1.35869 1.10502 1.21057 1.22603 0.96102 0.94338 0.96912 1.21295 1.08280 0.95928 0.99979 1.19011 0.89586 0.88768 0.92921 1.43940 1.60351 1.14949 1.10526 1.18824 0.94750 0.93768 1.28432 0.93937 1.25491 0.94717 0.98455 1.02910 1.70053 1.02054 1.41283 1.42440 0.85976 0.78564 0.80696 0.79872 1.19685 1.22350 1.20914 1.21399 0.92781 0.94851 0.84670 1.22763 0.98311 0.99330 0.95965 1.22240 0.98496 0.99402 0.94826 1.22020 0.95935 0.98966 0.98216 1.22424 0.97402 1.00601 0.96452 1.22194 0.96052 0.94571 0.96199 1.20369 1.01322 0.92709 0.99846 1.77020 1.25610 0.97581 1.15685 0.87879 0.93467 0.93624 0.89414 0.85878 0.78899 0.91170 0.95495 0.94152 0.92247 0.93574 0.94120 0.90546 0.91662 0.93022 0.90813 0.93792 0.93579 0.91727 0.91855 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.10 71.98 0.73 -2.35 16 2 C 0.13 2.57 7.23 86.38 0.62 3.20 16 3 N -0.38 -12.10 3.68 -348.05 -1.28 -13.38 16 4 C 0.05 1.56 11.36 83.54 0.95 2.50 16 5 C -0.24 -10.02 5.67 -20.14 -0.11 -10.13 16 6 C 0.22 10.36 5.24 85.63 0.45 10.81 16 7 N -0.58 -27.36 2.45 -675.72 -1.65 -29.01 16 8 C -0.23 -11.80 6.35 84.03 0.53 -11.26 16 9 H 0.04 2.33 6.71 -2.91 -0.02 2.31 16 10 C -0.02 -0.99 3.94 84.86 0.33 -0.65 16 11 N -0.91 -51.19 11.41 21.65 0.25 -50.94 16 12 Si 0.92 43.58 28.53 68.60 1.96 45.54 16 13 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 15 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 16 C 0.17 6.84 3.39 46.19 0.16 7.00 16 17 C -0.12 -4.56 6.47 32.01 0.21 -4.35 16 18 C -0.11 -3.23 6.82 31.67 0.22 -3.01 16 19 C -0.11 -3.49 6.80 31.32 0.21 -3.28 16 20 C -0.13 -5.06 6.41 31.32 0.20 -4.86 16 21 C 0.07 3.22 7.22 43.11 0.31 3.53 16 22 C -0.08 -3.60 10.28 71.24 0.73 -2.87 16 23 N -0.33 -13.29 12.42 -47.38 -0.59 -13.88 16 24 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.12 1.68 8.07 -2.39 -0.02 1.66 16 29 H 0.19 4.91 8.06 -2.91 -0.02 4.89 16 30 H 0.07 3.74 5.55 -2.39 -0.01 3.73 16 31 H 0.03 1.19 8.04 -2.39 -0.02 1.17 16 32 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 33 H 0.06 2.23 7.92 -2.39 -0.02 2.21 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.04 1.72 6.63 -2.39 -0.02 1.70 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.04 2.06 6.92 -2.39 -0.02 2.05 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.09 4.28 3.67 -2.39 -0.01 4.27 16 Total: -1.00 -63.19 344.66 5.18 -58.00 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.96 Total: 19.39 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 5.54 Total: -15.73 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -3.27 Total: -107.20 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.96 Total: 45.54 kcal Total: -63.19 5.18 -58.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892086632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.422 kcal (2) G-P(sol) polarization free energy of solvation -63.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds