Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46836 * 2 1 4 4 H 1.08999 * 109.46702 * 177.96321 * 3 2 1 5 5 C 1.50705 * 109.46960 * 57.97117 * 3 2 1 6 6 H 1.08006 * 119.99572 * 239.99506 * 5 3 2 7 7 C 1.37871 * 120.00293 * 59.99612 * 5 3 2 8 8 N 1.31513 * 120.00015 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00134 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47264 * 90.00005 * 9 7 5 11 11 H 1.48498 * 109.47454 * 210.00061 * 9 7 5 12 12 H 1.48506 * 109.46984 * 330.00117 * 9 7 5 13 13 N 1.46897 * 109.47599 * 297.96686 * 3 2 1 14 14 C 1.46895 * 110.99928 * 273.75276 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.89587 * 14 13 3 16 16 C 1.39871 * 126.04097 * 90.02230 * 15 14 13 17 17 N 1.30840 * 108.19776 * 179.97438 * 16 15 14 18 18 N 1.40080 * 108.21101 * 359.97438 * 17 16 15 19 19 C 1.46495 * 126.04268 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.46557 * 304.97261 * 19 18 17 21 21 C 1.53778 * 113.61543 * 272.49477 * 20 19 18 22 22 C 1.53777 * 87.08232 * 220.02118 * 21 20 19 23 23 C 1.53779 * 113.61209 * 174.99671 * 20 19 18 24 24 C 1.34949 * 107.92308 * 359.75816 * 18 17 16 25 25 H 1.08993 * 109.47109 * 294.44807 * 1 2 3 26 26 H 1.08996 * 109.46680 * 174.44622 * 1 2 3 27 27 H 1.09003 * 109.47128 * 54.45088 * 1 2 3 28 28 H 1.08999 * 109.46813 * 120.00161 * 2 1 3 29 29 H 1.08993 * 109.47328 * 240.00274 * 2 1 3 30 30 H 0.97000 * 120.00394 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00321 * 149.78918 * 13 3 2 32 32 H 1.09005 * 109.47061 * 294.88858 * 14 13 3 33 33 H 1.08997 * 109.47274 * 54.89373 * 14 13 3 34 34 H 1.07991 * 125.89954 * 359.95279 * 16 15 14 35 35 H 1.09000 * 109.47286 * 64.96936 * 19 18 17 36 36 H 1.08993 * 109.47763 * 184.97346 * 19 18 17 37 37 H 1.09003 * 112.85138 * 43.80510 * 20 19 18 38 38 H 1.09001 * 113.61273 * 334.56808 * 21 20 19 39 39 H 1.08998 * 113.61273 * 105.46916 * 21 20 19 40 40 H 1.09000 * 113.61823 * 270.88640 * 22 21 20 41 41 H 1.08999 * 113.61563 * 139.98276 * 22 21 20 42 42 H 1.09000 * 113.61913 * 254.53091 * 23 20 19 43 43 H 1.09003 * 113.61873 * 25.35079 * 23 20 19 44 44 H 1.08005 * 126.12873 * 180.23887 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4969 2.1673 1.2046 6 1 0.8798 3.0441 1.0744 7 6 1.7878 1.7111 2.4727 8 7 2.5397 0.6438 2.6312 9 14 1.1141 2.6090 3.9657 10 1 -0.2067 2.0380 4.3325 11 1 2.0546 2.4518 5.1041 12 1 0.9588 4.0513 3.6476 13 7 1.5909 2.1208 -1.2232 14 6 2.5281 1.8859 -2.3297 15 6 1.9734 2.4892 -3.5944 16 6 2.1936 3.7934 -4.0495 17 7 1.5502 3.9463 -5.1785 18 7 0.8998 2.7424 -5.4782 19 6 0.0678 2.4821 -6.6556 20 6 -1.0429 3.5313 -6.7370 21 6 -2.3058 3.1543 -5.9447 22 6 -3.1178 3.7295 -7.1172 23 6 -1.9024 3.4211 -8.0075 24 6 1.1799 1.8628 -4.4939 25 1 -0.3633 0.4253 0.9355 26 1 -0.3632 -1.0228 -0.0995 27 1 -0.3633 0.5975 -0.8361 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5137 -0.8899 30 1 2.7441 0.3226 3.5234 31 1 1.4614 3.1084 -1.0623 32 1 3.4877 2.3478 -2.0973 33 1 2.6650 0.8135 -2.4684 34 1 2.7910 4.5444 -3.5543 35 1 0.6830 2.5338 -7.5539 36 1 -0.3753 1.4896 -6.5752 37 1 -0.6861 4.5418 -6.5376 38 1 -2.4329 2.0800 -5.8111 39 1 -2.4223 3.7141 -5.0167 40 1 -3.3294 4.7944 -7.0209 41 1 -4.0016 3.1421 -7.3659 42 1 -1.6933 4.1961 -8.7448 43 1 -1.9181 2.4200 -8.4386 44 1 0.8307 0.8425 -4.4333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893606531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = 87.370777 kcal Electronic energy + Delta-G solvation = -21368.927547 eV Core-core repulsion = 18323.223732 eV Total energy + Delta-G solvation = -3045.703815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.97062 -38.98665 -36.20696 -33.47215 -32.38979 -30.89919 -29.58201 -28.15114 -26.14478 -25.84901 -23.93972 -23.28512 -22.93413 -20.58644 -20.12924 -19.32208 -18.88389 -16.90649 -16.24630 -15.76274 -15.31127 -14.88574 -14.72690 -14.15460 -13.87309 -13.55579 -13.36105 -12.95924 -12.73821 -12.70406 -12.50635 -12.26726 -11.96057 -11.84522 -11.45322 -11.33410 -10.94951 -10.91581 -10.75874 -10.63157 -10.50431 -10.38099 -10.23123 -9.92713 -9.67099 -9.31773 -9.11212 -8.73508 -8.42605 -8.03800 -7.09269 -5.97222 -4.01984 2.16350 2.68056 3.13970 3.32430 3.39117 3.42327 4.25687 4.35615 4.38879 4.44853 4.58263 4.77639 5.01151 5.13692 5.24201 5.33941 5.34320 5.41172 5.46780 5.59243 5.62461 5.63525 5.81399 5.82858 5.94647 5.97958 6.15707 6.23573 6.40499 6.57262 6.64279 6.76249 6.90675 6.96477 7.27593 7.28672 7.39247 7.56557 7.79570 7.85856 7.91483 7.97123 8.33341 8.49685 8.77186 9.08905 9.62664 11.08779 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.003485 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.447695 B = 8032.930010 C = 8357.290252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.215 3.785 4 H 0.000 1.000 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.135 3.865 15 C -0.214 4.214 16 C 0.050 3.950 17 N -0.305 5.305 18 N -0.376 5.376 19 C 0.147 3.853 20 C -0.122 4.122 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.133 4.133 24 C 0.064 3.936 25 H 0.050 0.950 26 H 0.010 0.990 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.009 0.991 30 H 0.260 0.740 31 H 0.330 0.670 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.177 0.823 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 2.392 -19.082 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.107 3.893 4 H 0.017 0.983 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.313 5.313 14 C 0.004 3.996 15 C -0.226 4.226 16 C -0.136 4.136 17 N -0.126 5.126 18 N -0.159 5.159 19 C 0.026 3.974 20 C -0.141 4.141 21 C -0.174 4.174 22 C -0.179 4.179 23 C -0.171 4.171 24 C -0.081 4.081 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.194 0.806 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.843 2.520 -20.185 21.462 hybrid contribution 0.584 0.355 1.879 1.999 sum -6.259 2.875 -18.306 19.559 Atomic orbital electron populations 1.21432 0.97629 0.96937 1.01556 1.21413 0.94975 0.98351 0.99168 1.19115 0.93249 0.91568 0.85337 0.98262 1.21207 1.31383 1.11871 0.90401 0.92383 1.24876 0.95134 0.95055 0.98804 1.69888 1.37502 1.23215 1.22273 0.86603 0.78752 0.80138 0.82539 1.20716 1.21382 1.19986 1.60681 1.47438 1.16194 1.06938 1.20123 0.92889 0.98896 0.87685 1.20210 1.07349 0.94863 1.00174 1.23764 0.99248 0.97053 0.93545 1.77195 1.13637 1.03865 1.17928 1.48464 1.39292 1.09134 1.18968 1.21677 0.90938 0.99194 0.85633 1.22902 0.93361 1.00376 0.97443 1.22978 0.95261 1.01265 0.97853 1.22784 0.97001 1.01318 0.96756 1.22912 0.96042 1.02103 0.96060 1.22268 0.99415 0.96745 0.89717 0.93053 0.97043 0.93443 0.89797 0.97227 0.93048 0.85283 0.95770 0.91589 0.80617 0.90280 0.88931 0.87858 0.90017 0.91255 0.90180 0.91349 0.91241 0.89940 0.81445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.46 37.16 0.35 -2.31 16 2 C -0.10 -2.42 5.58 -26.73 -0.15 -2.57 16 3 C 0.21 5.31 2.30 -68.86 -0.16 5.15 16 4 H 0.00 -0.01 7.84 -51.93 -0.41 -0.41 16 5 C -0.51 -13.68 7.34 -34.44 -0.25 -13.94 16 6 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.17 11.34 55.43 0.63 -24.54 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -14.30 5.50 -109.22 -0.60 -14.90 16 14 C 0.13 2.43 5.93 -4.98 -0.03 2.40 16 15 C -0.21 -3.44 5.66 -105.05 -0.59 -4.03 16 16 C 0.05 0.77 11.96 -17.36 -0.21 0.56 16 17 N -0.30 -4.71 12.27 30.62 0.38 -4.33 16 18 N -0.38 -5.05 3.68 -61.37 -0.23 -5.28 16 19 C 0.15 1.42 6.35 -4.04 -0.03 1.39 16 20 C -0.12 -1.14 3.87 -89.81 -0.35 -1.49 16 21 C -0.14 -1.28 7.63 -25.92 -0.20 -1.48 16 22 C -0.14 -1.08 8.08 -25.92 -0.21 -1.29 16 23 C -0.13 -0.95 7.64 -25.92 -0.20 -1.14 16 24 C 0.06 0.92 11.36 -17.22 -0.20 0.73 16 25 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 28 H 0.08 2.25 6.13 -51.93 -0.32 1.93 16 29 H 0.01 0.21 7.43 -51.93 -0.39 -0.18 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.33 7.00 8.24 -39.29 -0.32 6.67 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 1.20 7.39 -51.93 -0.38 0.82 16 34 H 0.18 2.35 8.06 -52.49 -0.42 1.93 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.71 7.77 -51.93 -0.40 0.30 16 37 H 0.10 1.18 7.96 -51.93 -0.41 0.77 16 38 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 44 H 0.17 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -29.38 354.75 -9.38 -38.76 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.58 Total: 5.12 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -2.31 Total: -16.39 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.18 Total: -49.05 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.38 -9.38 -38.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.133 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds