Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46836 * 2 1 4 4 H 1.08999 * 109.46702 * 177.96321 * 3 2 1 5 5 C 1.50705 * 109.46960 * 57.97117 * 3 2 1 6 6 H 1.08006 * 119.99572 * 239.99506 * 5 3 2 7 7 C 1.37871 * 120.00293 * 59.99612 * 5 3 2 8 8 N 1.31513 * 120.00015 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00134 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47264 * 90.00005 * 9 7 5 11 11 H 1.48498 * 109.47454 * 210.00061 * 9 7 5 12 12 H 1.48506 * 109.46984 * 330.00117 * 9 7 5 13 13 N 1.46897 * 109.47599 * 297.96686 * 3 2 1 14 14 C 1.46895 * 110.99928 * 273.75276 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.89587 * 14 13 3 16 16 C 1.39871 * 126.04097 * 90.02230 * 15 14 13 17 17 N 1.30840 * 108.19776 * 179.97438 * 16 15 14 18 18 N 1.40080 * 108.21101 * 359.97438 * 17 16 15 19 19 C 1.46495 * 126.04268 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.46557 * 304.97261 * 19 18 17 21 21 C 1.53778 * 113.61543 * 272.49477 * 20 19 18 22 22 C 1.53777 * 87.08232 * 220.02118 * 21 20 19 23 23 C 1.53779 * 113.61209 * 174.99671 * 20 19 18 24 24 C 1.34949 * 107.92308 * 359.75816 * 18 17 16 25 25 H 1.08993 * 109.47109 * 294.44807 * 1 2 3 26 26 H 1.08996 * 109.46680 * 174.44622 * 1 2 3 27 27 H 1.09003 * 109.47128 * 54.45088 * 1 2 3 28 28 H 1.08999 * 109.46813 * 120.00161 * 2 1 3 29 29 H 1.08993 * 109.47328 * 240.00274 * 2 1 3 30 30 H 0.97000 * 120.00394 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00321 * 149.78918 * 13 3 2 32 32 H 1.09005 * 109.47061 * 294.88858 * 14 13 3 33 33 H 1.08997 * 109.47274 * 54.89373 * 14 13 3 34 34 H 1.07991 * 125.89954 * 359.95279 * 16 15 14 35 35 H 1.09000 * 109.47286 * 64.96936 * 19 18 17 36 36 H 1.08993 * 109.47763 * 184.97346 * 19 18 17 37 37 H 1.09003 * 112.85138 * 43.80510 * 20 19 18 38 38 H 1.09001 * 113.61273 * 334.56808 * 21 20 19 39 39 H 1.08998 * 113.61273 * 105.46916 * 21 20 19 40 40 H 1.09000 * 113.61823 * 270.88640 * 22 21 20 41 41 H 1.08999 * 113.61563 * 139.98276 * 22 21 20 42 42 H 1.09000 * 113.61913 * 254.53091 * 23 20 19 43 43 H 1.09003 * 113.61873 * 25.35079 * 23 20 19 44 44 H 1.08005 * 126.12873 * 180.23887 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4969 2.1673 1.2046 6 1 0.8798 3.0441 1.0744 7 6 1.7878 1.7111 2.4727 8 7 2.5397 0.6438 2.6312 9 14 1.1141 2.6090 3.9657 10 1 -0.2067 2.0380 4.3325 11 1 2.0546 2.4518 5.1041 12 1 0.9588 4.0513 3.6476 13 7 1.5909 2.1208 -1.2232 14 6 2.5281 1.8859 -2.3297 15 6 1.9734 2.4892 -3.5944 16 6 2.1936 3.7934 -4.0495 17 7 1.5502 3.9463 -5.1785 18 7 0.8998 2.7424 -5.4782 19 6 0.0678 2.4821 -6.6556 20 6 -1.0429 3.5313 -6.7370 21 6 -2.3058 3.1543 -5.9447 22 6 -3.1178 3.7295 -7.1172 23 6 -1.9024 3.4211 -8.0075 24 6 1.1799 1.8628 -4.4939 25 1 -0.3633 0.4253 0.9355 26 1 -0.3632 -1.0228 -0.0995 27 1 -0.3633 0.5975 -0.8361 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5137 -0.8899 30 1 2.7441 0.3226 3.5234 31 1 1.4614 3.1084 -1.0623 32 1 3.4877 2.3478 -2.0973 33 1 2.6650 0.8135 -2.4684 34 1 2.7910 4.5444 -3.5543 35 1 0.6830 2.5338 -7.5539 36 1 -0.3753 1.4896 -6.5752 37 1 -0.6861 4.5418 -6.5376 38 1 -2.4329 2.0800 -5.8111 39 1 -2.4223 3.7141 -5.0167 40 1 -3.3294 4.7944 -7.0209 41 1 -4.0016 3.1421 -7.3659 42 1 -1.6933 4.1961 -8.7448 43 1 -1.9181 2.4200 -8.4386 44 1 0.8307 0.8425 -4.4333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893606531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = 71.266007 kcal Electronic energy + Delta-G solvation = -21369.625902 eV Core-core repulsion = 18323.223732 eV Total energy + Delta-G solvation = -3046.402170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07879 -39.69635 -38.01307 -34.93480 -33.81486 -32.66532 -30.94794 -29.29371 -27.89796 -26.49926 -25.45455 -24.75719 -24.21060 -21.62773 -21.26910 -20.76903 -20.10045 -18.42457 -17.69184 -16.87568 -16.58420 -16.15783 -15.88029 -15.63331 -15.24779 -15.04114 -14.81024 -14.16467 -14.09131 -14.00971 -13.73636 -13.34166 -13.20258 -13.01766 -12.87985 -12.79979 -12.64423 -12.38121 -12.34023 -11.98666 -11.67661 -11.57960 -11.36948 -11.28578 -11.20050 -11.16595 -10.74358 -10.49856 -10.19647 -9.25932 -8.84056 -8.05739 -6.17158 1.04482 1.43069 1.44522 1.53567 1.71221 1.91369 2.45714 3.22943 3.51696 3.63134 3.72752 3.91639 3.95745 3.98021 4.12116 4.27892 4.39130 4.54787 4.56495 4.58702 4.69716 4.83360 4.84654 4.85704 4.88611 4.90751 5.00826 5.04438 5.07036 5.10978 5.30007 5.34572 5.37531 5.47356 5.56991 5.62809 5.76218 5.78009 5.88868 5.97137 6.24585 6.34022 6.58990 6.82767 6.89092 7.10698 7.51527 8.99128 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.003485 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.447695 B = 8032.930010 C = 8357.290252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.096 4.096 3 C 0.221 3.779 4 H -0.036 1.036 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.674 5.674 14 C 0.144 3.856 15 C -0.238 4.238 16 C 0.041 3.959 17 N -0.324 5.324 18 N -0.369 5.369 19 C 0.138 3.862 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.119 4.119 24 C 0.073 3.927 25 H 0.027 0.973 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.024 0.976 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.017 0.983 33 H 0.064 0.936 34 H 0.186 0.814 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 1.956 -20.733 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C 0.112 3.888 4 H -0.018 1.018 5 C -0.560 4.560 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.305 5.305 14 C 0.013 3.987 15 C -0.250 4.250 16 C -0.144 4.144 17 N -0.146 5.146 18 N -0.151 5.151 19 C 0.018 3.982 20 C -0.143 4.143 21 C -0.179 4.179 22 C -0.176 4.176 23 C -0.157 4.157 24 C -0.074 4.074 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.203 0.797 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.266 2.102 -21.871 23.475 hybrid contribution 1.018 0.487 2.305 2.567 sum -7.248 2.589 -19.565 21.025 Atomic orbital electron populations 1.21282 0.96151 0.98350 1.00468 1.21285 0.96153 0.97604 0.98430 1.18917 0.91011 0.92357 0.86468 1.01804 1.21465 1.31190 1.11862 0.91488 0.92800 1.25585 0.95426 0.95750 1.01393 1.70017 1.38463 1.24360 1.22746 0.85666 0.78106 0.79189 0.79325 1.20315 1.21158 1.19457 1.60649 1.48011 1.15705 1.06095 1.20000 0.92128 0.98903 0.87632 1.20025 1.09323 0.95551 1.00075 1.23967 0.99494 0.97242 0.93732 1.77163 1.14196 1.05166 1.18060 1.48780 1.38608 1.08210 1.19487 1.22091 0.90794 1.00609 0.84698 1.22827 0.93387 0.98922 0.99166 1.23030 0.96032 1.01575 0.97269 1.22779 0.97674 1.01206 0.95948 1.22888 0.94309 1.03465 0.95026 1.22602 0.98123 0.97587 0.89133 0.95428 0.94678 0.92744 0.92693 0.95724 0.93097 0.85570 0.96456 0.91707 0.79686 0.88906 0.86205 0.90467 0.89029 0.93839 0.90643 0.90060 0.90712 0.87891 0.79085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.62 9.46 71.98 0.68 -3.94 16 2 C -0.10 -4.63 5.58 30.60 0.17 -4.46 16 3 C 0.22 11.07 2.30 44.17 0.10 11.18 16 4 H -0.04 -2.00 7.84 -2.39 -0.02 -2.02 16 5 C -0.52 -28.29 7.34 25.60 0.19 -28.10 16 6 H 0.05 2.91 7.60 -2.91 -0.02 2.89 16 7 C 0.02 0.96 5.30 84.65 0.45 1.41 16 8 N -0.92 -52.62 11.34 21.44 0.24 -52.38 16 9 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.67 -28.31 5.50 -499.46 -2.75 -31.06 16 14 C 0.14 5.17 5.93 85.56 0.51 5.68 16 15 C -0.24 -7.44 5.66 -20.14 -0.11 -7.55 16 16 C 0.04 1.25 11.96 85.24 1.02 2.27 16 17 N -0.32 -9.76 12.27 -57.03 -0.70 -10.46 16 18 N -0.37 -9.25 3.68 -348.06 -1.28 -10.53 16 19 C 0.14 2.28 6.35 86.38 0.55 2.83 16 20 C -0.12 -2.10 3.87 -10.27 -0.04 -2.14 16 21 C -0.14 -2.45 7.63 31.12 0.24 -2.21 16 22 C -0.14 -1.84 8.08 31.12 0.25 -1.59 16 23 C -0.12 -1.36 7.64 31.12 0.24 -1.12 16 24 C 0.07 1.94 11.36 83.54 0.95 2.89 16 25 H 0.03 1.31 7.37 -2.39 -0.02 1.29 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 2.29 7.50 -2.39 -0.02 2.27 16 28 H 0.05 2.98 6.13 -2.39 -0.01 2.97 16 29 H 0.02 1.08 7.43 -2.39 -0.02 1.06 16 30 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.33 14.00 8.24 -89.70 -0.74 13.26 16 32 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.06 2.33 7.39 -2.39 -0.02 2.31 16 34 H 0.19 4.99 8.06 -2.92 -0.02 4.97 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.12 1.36 7.77 -2.39 -0.02 1.34 16 37 H 0.08 1.74 7.96 -2.39 -0.02 1.72 16 38 H 0.09 1.39 7.90 -2.39 -0.02 1.37 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.10 0.79 8.10 -2.39 -0.02 0.77 16 44 H 0.19 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -63.31 354.75 2.96 -60.36 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.23 Total: 23.16 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 5.19 Total: -24.85 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -4.48 Total: -104.43 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -63.31 2.96 -60.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.622 kcal (2) G-P(sol) polarization free energy of solvation -63.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds