Wall clock time and date at job start Mon Mar 30 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.34950 * 126.03255 * 124.71851 * 3 2 1 5 5 C 1.35328 * 107.74401 * 179.84052 * 4 3 2 6 6 C 1.50695 * 126.04159 * 180.15964 * 5 4 3 7 7 N 1.46892 * 109.47448 * 260.30995 * 6 5 4 8 8 C 1.46898 * 111.00653 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.01415 * 325.06690 * 8 7 6 10 10 C 1.53879 * 110.03115 * 86.44880 * 8 7 6 11 11 C 1.54266 * 106.59698 * 119.29007 * 10 8 7 12 12 C 1.54888 * 104.19527 * 23.60994 * 11 10 8 13 13 H 1.09001 * 110.75889 * 80.55852 * 12 11 10 14 14 C 1.50698 * 110.75862 * 203.74290 * 12 11 10 15 15 H 1.08004 * 120.00439 * 118.54156 * 14 12 11 16 16 C 1.37881 * 119.99798 * 298.54942 * 14 12 11 17 17 N 1.31507 * 120.00157 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99871 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47454 * 59.99701 * 18 16 14 20 20 H 1.48501 * 109.47271 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46967 * 299.99489 * 18 16 14 22 22 C 1.54260 * 110.03821 * 203.61889 * 8 7 6 23 23 C 1.39866 * 107.91614 * 0.42360 * 5 4 3 24 24 C 1.50703 * 125.89717 * 179.76006 * 23 5 4 25 25 N 1.30843 * 108.20566 * 359.73540 * 23 5 4 26 26 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 31 31 H 1.07997 * 126.13103 * 0.02562 * 4 3 2 32 32 H 1.09006 * 109.46713 * 20.31081 * 6 5 4 33 33 H 1.09004 * 109.47021 * 140.30385 * 6 5 4 34 34 H 1.00909 * 110.99865 * 303.95347 * 7 6 5 35 35 H 1.09005 * 110.03457 * 238.57566 * 10 8 7 36 36 H 1.08997 * 110.03487 * 0.02562 * 10 8 7 37 37 H 1.08997 * 110.48603 * 142.28751 * 11 10 8 38 38 H 1.08993 * 110.48682 * 264.93303 * 11 10 8 39 39 H 0.97004 * 120.00436 * 180.02562 * 17 16 14 40 40 H 1.09004 * 110.48744 * 335.78678 * 22 8 7 41 41 H 1.09005 * 110.48772 * 98.42529 * 22 8 7 42 42 H 1.08995 * 109.47137 * 269.99654 * 24 23 5 43 43 H 1.08998 * 109.46977 * 30.00116 * 24 23 5 44 44 H 1.09006 * 109.47264 * 149.99614 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8689 1.9225 0.8970 5 6 3.0718 3.2136 0.5459 6 6 3.9554 4.1997 1.2655 7 7 3.1305 5.0620 2.1222 8 6 3.9600 6.0379 2.8415 9 1 4.9206 5.5923 3.1001 10 6 4.1763 7.2886 1.9716 11 6 3.5743 8.4764 2.7503 12 6 3.5948 8.0117 4.2276 13 1 4.5865 8.1433 4.6603 14 6 2.5597 8.7520 5.0349 15 1 1.7585 8.2089 5.5139 16 6 2.6356 10.1229 5.1618 17 7 3.6114 10.7842 4.5788 18 14 1.3522 11.0407 6.1618 19 1 1.3718 10.5490 7.5630 20 1 1.6560 12.4942 6.1424 21 1 0.0081 10.8086 5.5745 22 6 3.2341 6.5093 4.1184 23 6 2.3119 3.4726 -0.5994 24 6 2.2348 4.7886 -1.3297 25 7 1.6800 2.3749 -0.9275 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.3110 1.4154 1.7418 32 1 4.6767 3.6605 1.8797 33 1 4.4854 4.8123 0.5361 34 1 2.4118 5.5239 1.5853 35 1 5.2419 7.4505 1.8088 36 1 3.6655 7.1717 1.0159 37 1 4.1889 9.3674 2.6221 38 1 2.5518 8.6671 2.4246 39 1 3.6650 11.7486 4.6684 40 1 2.1566 6.3823 4.0136 41 1 3.6005 5.9648 4.9887 42 1 1.4229 5.3867 -0.9159 43 1 3.1768 5.3245 -1.2132 44 1 2.0490 4.6064 -2.3882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894694829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:07 Heat of formation + Delta-G solvation = 55.842440 kcal Electronic energy + Delta-G solvation = -21363.074898 eV Core-core repulsion = 18316.003912 eV Total energy + Delta-G solvation = -3047.070986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27533 -37.82208 -35.28466 -33.98555 -32.09417 -31.51010 -29.91858 -27.98969 -27.77734 -26.58156 -24.40795 -23.30430 -22.74508 -20.78630 -19.40996 -19.20558 -18.97071 -16.85622 -16.27271 -15.69300 -15.34626 -14.56224 -14.42868 -14.38935 -14.19513 -13.58412 -13.39208 -13.26470 -12.81474 -12.59957 -12.37929 -12.28549 -12.15150 -12.04191 -11.89451 -11.62095 -11.45630 -10.97399 -10.83521 -10.60723 -10.51279 -10.35248 -10.01108 -9.70602 -9.44878 -9.19820 -9.03685 -8.70300 -8.38529 -8.29243 -7.78247 -5.92923 -3.95215 1.88148 2.42712 2.75397 3.36998 3.41239 3.44355 4.25539 4.50151 4.66343 4.75608 4.80127 4.86828 4.92173 5.15726 5.30835 5.37994 5.39485 5.44814 5.48615 5.62005 5.67601 5.77539 5.81073 5.88703 5.89975 5.95969 6.04876 6.23800 6.38001 6.60444 6.71014 6.78059 6.83705 6.93082 7.00895 7.14885 7.25046 7.43268 7.69625 7.73847 7.80324 7.89143 8.00836 8.13260 8.55645 9.07349 9.68372 11.16220 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027571 B = 0.003241 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.323051 B = 8637.140794 C = 8910.343979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 N -0.378 5.378 4 C 0.068 3.932 5 C -0.225 4.225 6 C 0.136 3.864 7 N -0.679 5.679 8 C 0.083 3.917 9 H 0.064 0.936 10 C -0.154 4.154 11 C -0.098 4.098 12 C 0.048 3.952 13 H 0.027 0.973 14 C -0.510 4.510 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.102 4.102 23 C 0.080 3.920 24 C -0.075 4.075 25 N -0.300 5.300 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.171 0.829 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.339 0.661 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -19.071 -10.576 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 N -0.160 5.160 4 C -0.079 4.079 5 C -0.236 4.236 6 C 0.006 3.994 7 N -0.310 5.310 8 C -0.027 4.027 9 H 0.083 0.917 10 C -0.193 4.193 11 C -0.136 4.136 12 C 0.029 3.971 13 H 0.045 0.955 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.140 4.140 23 C -0.086 4.086 24 C -0.134 4.134 25 N -0.123 5.123 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.188 0.812 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.158 0.842 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.656 -20.066 -10.895 22.893 hybrid contribution 0.115 1.439 0.438 1.509 sum -1.541 -18.626 -10.457 21.416 Atomic orbital electron populations 1.22054 0.93903 1.02628 1.03740 1.21616 0.96043 0.77674 1.03405 1.48500 1.36160 1.09871 1.21466 1.22304 0.95301 0.94734 0.95530 1.19937 1.08479 0.95100 1.00111 1.20108 0.93115 0.92573 0.93578 1.60774 1.14519 1.24457 1.31224 1.22344 0.95469 0.89895 0.94984 0.91723 1.22980 0.99962 0.98435 0.97962 1.22236 0.98964 0.95359 0.97030 1.19578 0.96491 0.88768 0.92263 0.95505 1.21124 1.10922 0.91739 1.31066 0.92758 1.24975 0.95568 0.97765 0.95673 1.69950 1.31500 1.07630 1.43968 0.86727 0.82192 0.78637 0.80821 1.20359 1.21447 1.20350 1.22430 0.99609 0.98302 0.93629 1.22235 0.95631 0.95102 0.95662 1.20198 1.03279 0.90560 0.99372 1.77215 1.24017 0.96745 1.14275 0.91157 0.90906 0.91940 0.88809 0.90146 0.81177 0.91114 0.94929 0.84235 0.93334 0.93756 0.91631 0.93654 0.93173 0.92085 0.93732 0.90271 0.90529 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.10 37.16 0.38 -0.85 16 2 C 0.13 1.01 7.23 -4.04 -0.03 0.98 16 3 N -0.38 -4.38 3.68 -61.36 -0.23 -4.60 16 4 C 0.07 0.78 11.36 -17.22 -0.20 0.59 16 5 C -0.22 -2.95 5.61 -105.05 -0.59 -3.54 16 6 C 0.14 1.82 5.71 -4.98 -0.03 1.80 16 7 N -0.68 -10.69 6.19 -106.81 -0.66 -11.35 16 8 C 0.08 1.47 3.23 -66.60 -0.21 1.25 16 9 H 0.06 1.11 7.83 -51.93 -0.41 0.70 16 10 C -0.15 -2.86 6.37 -25.61 -0.16 -3.03 16 11 C -0.10 -2.27 5.57 -25.07 -0.14 -2.41 16 12 C 0.05 1.19 2.82 -89.78 -0.25 0.94 16 13 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 14 C -0.51 -14.18 8.54 -34.44 -0.29 -14.48 16 15 H 0.05 1.50 7.78 -52.48 -0.41 1.09 16 16 C 0.06 1.72 5.33 -17.82 -0.10 1.63 16 17 N -0.89 -25.83 12.02 55.43 0.67 -25.16 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.10 -2.14 5.95 -25.08 -0.15 -2.29 16 23 C 0.08 1.08 7.22 -82.40 -0.59 0.49 16 24 C -0.08 -0.85 10.26 36.01 0.37 -0.48 16 25 N -0.30 -4.18 12.42 33.67 0.42 -3.76 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.47 8.07 -51.93 -0.42 0.06 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 33 H 0.03 0.43 7.55 -51.93 -0.39 0.04 16 34 H 0.34 5.46 8.19 -39.29 -0.32 5.14 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.75 7.59 -51.93 -0.39 0.35 16 37 H 0.06 1.67 7.37 -51.93 -0.38 1.29 16 38 H 0.04 1.10 8.04 -51.93 -0.42 0.68 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.06 1.34 7.95 -51.93 -0.41 0.93 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.81 7.50 -51.93 -0.39 0.42 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -30.88 356.04 -9.19 -40.07 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.73 Total: 2.30 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.00 Total: -19.41 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.20 Total: -44.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.88 -9.19 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894694829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.908 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds