Wall clock time and date at job start Mon Mar 30 2020 01:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40082 * 126.03977 * 2 1 4 4 C 1.30833 * 108.20534 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20190 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.03649 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47398 * 260.02989 * 6 5 4 8 8 C 1.46905 * 111.00161 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47159 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47270 * 299.99979 * 9 8 7 11 11 C 1.53002 * 109.46894 * 60.00264 * 9 8 7 12 12 C 1.50695 * 109.46844 * 180.02562 * 9 8 7 13 13 H 1.08005 * 120.00296 * 0.70412 * 12 9 8 14 14 C 1.37883 * 119.99895 * 180.70809 * 12 9 8 15 15 N 1.31520 * 119.99996 * 192.87869 * 14 12 9 16 16 Si 1.86793 * 119.99824 * 12.88460 * 14 12 9 17 17 H 1.48504 * 109.47382 * 84.37410 * 16 14 12 18 18 H 1.48504 * 109.46989 * 204.37402 * 16 14 12 19 19 H 1.48499 * 109.47064 * 324.37316 * 16 14 12 20 20 C 1.34951 * 126.03402 * 180.28762 * 2 1 3 21 21 C 1.50697 * 126.12925 * 359.97438 * 20 2 1 22 22 C 1.53005 * 117.49805 * 311.34501 * 21 20 2 23 23 C 1.52997 * 117.49796 * 242.68461 * 21 20 2 24 24 H 1.09001 * 109.47660 * 84.93857 * 1 2 3 25 25 H 1.09000 * 109.47095 * 204.94230 * 1 2 3 26 26 H 1.09006 * 109.46890 * 324.93382 * 1 2 3 27 27 H 1.08000 * 125.89595 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46726 * 140.02917 * 6 5 4 29 29 H 1.09002 * 109.47032 * 20.03212 * 6 5 4 30 30 H 1.00895 * 110.99951 * 303.95463 * 7 6 5 31 31 H 1.08997 * 109.47096 * 300.00068 * 8 7 6 32 32 H 1.09002 * 109.46855 * 60.00185 * 8 7 6 33 33 H 1.09005 * 109.46996 * 68.87338 * 10 9 8 34 34 H 1.08998 * 109.47514 * 188.87322 * 10 9 8 35 35 H 1.09005 * 109.47158 * 308.87380 * 10 9 8 36 36 H 1.08997 * 109.47319 * 59.99847 * 11 9 8 37 37 H 1.09001 * 109.46397 * 180.02562 * 11 9 8 38 38 H 1.08998 * 109.47141 * 299.99414 * 11 9 8 39 39 H 0.96994 * 119.99371 * 179.97438 * 15 14 12 40 40 H 1.08996 * 115.55216 * 97.01038 * 21 20 2 41 41 H 1.09001 * 117.49897 * 0.02562 * 22 21 20 42 42 H 1.08992 * 117.49742 * 145.02092 * 22 21 20 43 43 H 1.09001 * 117.50187 * 214.97965 * 23 21 20 44 44 H 1.09004 * 117.49770 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0006 5 6 3.5436 -0.6666 -0.0003 6 6 4.7679 -1.5454 -0.0013 7 7 5.0246 -2.0259 -1.3655 8 6 6.2133 -2.8882 -1.4049 9 6 6.4476 -3.3686 -2.8386 10 6 5.2282 -4.1589 -3.3174 11 6 6.6634 -2.1605 -3.7523 12 6 7.6666 -4.2536 -2.8789 13 1 8.2124 -4.4628 -1.9706 14 6 8.0852 -4.7964 -4.0752 15 7 8.9811 -5.7593 -4.0828 16 14 7.3801 -4.1640 -5.6852 17 1 8.1337 -2.9592 -6.1164 18 1 7.4959 -5.2185 -6.7244 19 1 5.9502 -3.8116 -5.4948 20 6 2.2589 -1.0913 -0.0055 21 6 1.7973 -2.5258 -0.0121 22 6 0.7278 -2.9285 1.0053 23 6 2.1742 -3.3947 1.1894 24 1 -0.3634 0.0907 -1.0236 25 1 -0.3633 -0.9318 0.4334 26 1 -0.3633 0.8412 0.5905 27 1 4.4054 1.3709 -0.0011 28 1 4.6044 -2.3969 0.6591 29 1 5.6264 -0.9728 0.3498 30 1 4.2184 -2.5048 -1.7379 31 1 7.0820 -2.3254 -1.0634 32 1 6.0594 -3.7491 -0.7543 33 1 4.3818 -3.4827 -3.4388 34 1 5.4544 -4.6328 -4.2725 35 1 4.9794 -4.9240 -2.5820 36 1 7.5321 -1.5975 -3.4112 37 1 6.8298 -2.5028 -4.7737 38 1 5.7814 -1.5207 -3.7231 39 1 9.2752 -6.1413 -4.9244 40 1 1.7672 -3.0055 -0.9904 41 1 0.3578 -2.1558 1.6791 42 1 -0.0055 -3.6734 0.6964 43 1 2.3917 -4.4462 1.0017 44 1 2.7557 -2.9287 1.9849 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894854446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:54 Heat of formation + Delta-G solvation = 118.611948 kcal Electronic energy + Delta-G solvation = -22121.714007 eV Core-core repulsion = 19077.364911 eV Total energy + Delta-G solvation = -3044.349096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.41140 -37.31845 -37.12758 -34.47101 -32.88911 -31.53827 -29.97154 -27.56339 -26.14378 -25.32005 -24.84283 -23.52633 -22.90064 -22.29923 -20.69216 -19.31209 -18.63647 -16.82306 -15.98906 -15.96592 -15.44860 -15.17339 -14.73697 -14.54517 -14.14279 -13.81986 -13.53715 -12.98095 -12.85342 -12.72789 -12.59963 -12.47938 -11.93994 -11.90303 -11.82082 -11.78669 -11.44035 -11.10464 -10.78041 -10.73657 -10.35648 -10.21733 -9.98910 -9.92747 -9.78774 -9.25854 -8.90373 -8.51083 -8.39049 -8.26794 -7.68770 -6.03697 -3.99381 1.82725 2.43286 2.82708 3.36198 3.44711 3.46038 3.48709 4.23086 4.40289 4.48420 4.54100 4.67591 4.93607 5.01322 5.04756 5.14614 5.19685 5.29442 5.30353 5.35789 5.55926 5.61154 5.74262 5.84668 5.96410 5.99847 6.04421 6.21959 6.30916 6.37217 6.59895 6.68801 6.69621 6.73798 6.91685 6.98489 6.99220 7.09155 7.42820 7.64204 7.65515 7.72863 7.90297 8.05142 8.60210 9.01127 9.62715 11.09784 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.004283 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.045948 B = 6536.514325 C = 6827.683240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.373 5.373 3 N -0.304 5.304 4 C 0.064 3.936 5 C -0.213 4.213 6 C 0.136 3.864 7 N -0.684 5.684 8 C 0.084 3.916 9 C 0.040 3.960 10 C -0.145 4.145 11 C -0.133 4.133 12 C -0.510 4.510 13 H 0.071 0.929 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.885 3.115 17 H -0.287 1.287 18 H -0.309 1.309 19 H -0.246 1.246 20 C 0.114 3.886 21 C -0.101 4.101 22 C -0.180 4.180 23 C -0.152 4.152 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.183 0.817 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.334 0.666 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.027 0.973 38 H 0.043 0.957 39 H 0.262 0.738 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.082 7.915 10.172 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.155 5.155 3 N -0.124 5.124 4 C -0.122 4.122 5 C -0.225 4.225 6 C 0.006 3.994 7 N -0.316 5.316 8 C -0.044 4.044 9 C 0.039 3.961 10 C -0.203 4.203 11 C -0.189 4.189 12 C -0.548 4.548 13 H 0.089 0.911 14 C -0.129 4.129 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.215 1.215 18 H -0.238 1.238 19 H -0.172 1.172 20 C -0.013 4.013 21 C -0.120 4.120 22 C -0.217 4.217 23 C -0.190 4.190 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.200 0.800 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.567 9.388 9.900 23.041 hybrid contribution -0.007 -1.132 -0.671 1.316 sum -18.574 8.256 9.229 22.324 Atomic orbital electron populations 1.21908 0.74912 1.04209 1.03375 1.48299 1.06173 1.03288 1.57738 1.77343 1.01822 1.07640 1.25631 1.23741 0.94972 0.94557 0.98897 1.19805 0.93534 0.93980 1.15166 1.20132 0.93184 0.95406 0.90717 1.60656 1.07626 1.43820 1.19475 1.21947 0.91193 0.93043 0.98202 1.18464 0.94431 0.92478 0.90743 1.22343 0.97630 0.99056 1.01231 1.22107 1.00082 0.98696 0.98055 1.20891 1.10156 1.28060 0.95665 0.91093 1.24981 0.94813 0.93991 0.99136 1.69961 1.32603 1.24410 1.26736 0.87327 0.80884 0.76887 0.83061 1.21518 1.23821 1.17183 1.19867 0.90695 0.88384 1.02393 1.20498 1.04951 0.89906 0.96684 1.23092 0.92835 1.03693 1.02079 1.23008 0.97177 1.00043 0.98733 0.90972 0.89163 0.89828 0.80043 0.95165 0.90810 0.84794 0.91836 0.96114 0.95550 0.92660 0.94256 0.93620 0.95425 0.93807 0.92819 0.85662 0.88765 0.87918 0.87623 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 11.31 59.85 0.68 1.46 16 2 N -0.37 -4.57 4.01 -63.88 -0.26 -4.83 16 3 N -0.30 -4.34 12.58 30.62 0.39 -3.96 16 4 C 0.06 0.88 11.96 -17.37 -0.21 0.67 16 5 C -0.21 -2.92 5.61 -105.06 -0.59 -3.51 16 6 C 0.14 1.93 5.87 -4.98 -0.03 1.90 16 7 N -0.68 -11.42 5.71 -115.06 -0.66 -12.07 16 8 C 0.08 1.66 4.57 -3.82 -0.02 1.64 16 9 C 0.04 0.91 0.57 -155.66 -0.09 0.82 16 10 C -0.15 -3.10 7.24 37.16 0.27 -2.84 16 11 C -0.13 -2.97 7.61 37.16 0.28 -2.68 16 12 C -0.51 -14.06 8.62 -34.44 -0.30 -14.36 16 13 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 14 C 0.07 2.07 5.34 -17.81 -0.10 1.98 16 15 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 16 Si 0.89 22.22 22.76 -169.99 -3.87 18.35 16 17 H -0.29 -7.24 7.07 56.52 0.40 -6.84 16 18 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 19 H -0.25 -5.73 4.61 56.52 0.26 -5.47 16 20 C 0.11 1.42 6.37 -82.27 -0.52 0.89 16 21 C -0.10 -1.00 5.68 -91.77 -0.52 -1.52 16 22 C -0.18 -1.34 8.72 -26.69 -0.23 -1.58 16 23 C -0.15 -1.36 9.32 -26.69 -0.25 -1.61 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.54 5.12 -51.93 -0.27 0.28 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.18 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.03 0.41 7.06 -51.93 -0.37 0.05 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.33 5.50 6.97 -39.29 -0.27 5.23 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.03 0.49 7.03 -51.93 -0.36 0.13 16 34 H 0.05 1.27 4.06 -51.93 -0.21 1.06 16 35 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 36 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.65 2.39 -51.93 -0.12 0.52 16 38 H 0.04 0.90 7.60 -51.93 -0.39 0.51 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 0.67 7.05 -51.93 -0.37 0.31 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 0.95 8.02 -51.93 -0.42 0.53 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -32.05 337.66 -7.29 -39.34 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.13 Total: 3.61 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -1.62 Total: -18.74 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.25 Total: -47.65 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -3.87 Total: 18.35 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.05 -7.29 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894854446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.948 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds