Wall clock time and date at job start Mon Mar 30 2020 01:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40082 * 126.03977 * 2 1 4 4 C 1.30833 * 108.20534 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20190 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.03649 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47398 * 260.02989 * 6 5 4 8 8 C 1.46905 * 111.00161 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47159 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47270 * 299.99979 * 9 8 7 11 11 C 1.53002 * 109.46894 * 60.00264 * 9 8 7 12 12 C 1.50695 * 109.46844 * 180.02562 * 9 8 7 13 13 H 1.08005 * 120.00296 * 0.70412 * 12 9 8 14 14 C 1.37883 * 119.99895 * 180.70809 * 12 9 8 15 15 N 1.31520 * 119.99996 * 192.87869 * 14 12 9 16 16 Si 1.86793 * 119.99824 * 12.88460 * 14 12 9 17 17 H 1.48504 * 109.47382 * 84.37410 * 16 14 12 18 18 H 1.48504 * 109.46989 * 204.37402 * 16 14 12 19 19 H 1.48499 * 109.47064 * 324.37316 * 16 14 12 20 20 C 1.34951 * 126.03402 * 180.28762 * 2 1 3 21 21 C 1.50697 * 126.12925 * 359.97438 * 20 2 1 22 22 C 1.53005 * 117.49805 * 311.34501 * 21 20 2 23 23 C 1.52997 * 117.49796 * 242.68461 * 21 20 2 24 24 H 1.09001 * 109.47660 * 84.93857 * 1 2 3 25 25 H 1.09000 * 109.47095 * 204.94230 * 1 2 3 26 26 H 1.09006 * 109.46890 * 324.93382 * 1 2 3 27 27 H 1.08000 * 125.89595 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46726 * 140.02917 * 6 5 4 29 29 H 1.09002 * 109.47032 * 20.03212 * 6 5 4 30 30 H 1.00895 * 110.99951 * 303.95463 * 7 6 5 31 31 H 1.08997 * 109.47096 * 300.00068 * 8 7 6 32 32 H 1.09002 * 109.46855 * 60.00185 * 8 7 6 33 33 H 1.09005 * 109.46996 * 68.87338 * 10 9 8 34 34 H 1.08998 * 109.47514 * 188.87322 * 10 9 8 35 35 H 1.09005 * 109.47158 * 308.87380 * 10 9 8 36 36 H 1.08997 * 109.47319 * 59.99847 * 11 9 8 37 37 H 1.09001 * 109.46397 * 180.02562 * 11 9 8 38 38 H 1.08998 * 109.47141 * 299.99414 * 11 9 8 39 39 H 0.96994 * 119.99371 * 179.97438 * 15 14 12 40 40 H 1.08996 * 115.55216 * 97.01038 * 21 20 2 41 41 H 1.09001 * 117.49897 * 0.02562 * 22 21 20 42 42 H 1.08992 * 117.49742 * 145.02092 * 22 21 20 43 43 H 1.09001 * 117.50187 * 214.97965 * 23 21 20 44 44 H 1.09004 * 117.49770 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0006 5 6 3.5436 -0.6666 -0.0003 6 6 4.7679 -1.5454 -0.0013 7 7 5.0246 -2.0259 -1.3655 8 6 6.2133 -2.8882 -1.4049 9 6 6.4476 -3.3686 -2.8386 10 6 5.2282 -4.1589 -3.3174 11 6 6.6634 -2.1605 -3.7523 12 6 7.6666 -4.2536 -2.8789 13 1 8.2124 -4.4628 -1.9706 14 6 8.0852 -4.7964 -4.0752 15 7 8.9811 -5.7593 -4.0828 16 14 7.3801 -4.1640 -5.6852 17 1 8.1337 -2.9592 -6.1164 18 1 7.4959 -5.2185 -6.7244 19 1 5.9502 -3.8116 -5.4948 20 6 2.2589 -1.0913 -0.0055 21 6 1.7973 -2.5258 -0.0121 22 6 0.7278 -2.9285 1.0053 23 6 2.1742 -3.3947 1.1894 24 1 -0.3634 0.0907 -1.0236 25 1 -0.3633 -0.9318 0.4334 26 1 -0.3633 0.8412 0.5905 27 1 4.4054 1.3709 -0.0011 28 1 4.6044 -2.3969 0.6591 29 1 5.6264 -0.9728 0.3498 30 1 4.2184 -2.5048 -1.7379 31 1 7.0820 -2.3254 -1.0634 32 1 6.0594 -3.7491 -0.7543 33 1 4.3818 -3.4827 -3.4388 34 1 5.4544 -4.6328 -4.2725 35 1 4.9794 -4.9240 -2.5820 36 1 7.5321 -1.5975 -3.4112 37 1 6.8298 -2.5028 -4.7737 38 1 5.7814 -1.5207 -3.7231 39 1 9.2752 -6.1413 -4.9244 40 1 1.7672 -3.0055 -0.9904 41 1 0.3578 -2.1558 1.6791 42 1 -0.0055 -3.6734 0.6964 43 1 2.3917 -4.4462 1.0017 44 1 2.7557 -2.9287 1.9849 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894854446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:54 Heat of formation + Delta-G solvation = 97.313039 kcal Electronic energy + Delta-G solvation = -22122.637597 eV Core-core repulsion = 19077.364911 eV Total energy + Delta-G solvation = -3045.272686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.33856 -38.86871 -37.94547 -35.87460 -34.10148 -33.35166 -31.07674 -28.52604 -27.89099 -27.04870 -26.38113 -24.68647 -23.70969 -23.21296 -21.62540 -20.57045 -20.09762 -18.06846 -17.69753 -17.20026 -16.84488 -16.32984 -15.77395 -15.40618 -15.28851 -15.07105 -14.78472 -14.73330 -14.34739 -14.22162 -13.78055 -13.69762 -13.53112 -13.36961 -12.89200 -12.65486 -12.44189 -12.36069 -12.24423 -11.94601 -11.82641 -11.67578 -11.56521 -11.48096 -11.14923 -10.88610 -10.54928 -10.28565 -10.16853 -9.37525 -8.99990 -8.25958 -6.24672 0.89693 1.37769 1.40987 1.51278 1.63223 1.80661 2.38344 2.77640 3.11839 3.48708 3.59908 3.73475 3.89931 3.97132 4.19739 4.27451 4.38077 4.38627 4.42629 4.48126 4.59868 4.63373 4.65842 4.74756 4.90175 4.90667 4.94062 4.97687 4.99351 5.06109 5.08737 5.14303 5.21099 5.25078 5.28795 5.34882 5.63481 5.71365 5.79896 5.90419 6.13691 6.31343 6.40285 6.67536 6.76881 6.83665 7.40834 8.91232 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.004283 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.045948 B = 6536.514325 C = 6827.683240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.373 5.373 3 N -0.331 5.331 4 C 0.054 3.946 5 C -0.236 4.236 6 C 0.143 3.857 7 N -0.680 5.680 8 C 0.098 3.902 9 C 0.035 3.965 10 C -0.141 4.141 11 C -0.128 4.128 12 C -0.509 4.509 13 H 0.031 0.969 14 C 0.017 3.983 15 N -0.949 5.949 16 Si 0.939 3.061 17 H -0.288 1.288 18 H -0.316 1.316 19 H -0.210 1.210 20 C 0.121 3.879 21 C -0.116 4.116 22 C -0.155 4.155 23 C -0.159 4.159 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.194 0.806 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.338 0.662 31 H 0.052 0.948 32 H 0.014 0.986 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.019 0.981 38 H 0.066 0.934 39 H 0.262 0.738 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.124 0.876 43 H 0.110 0.890 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.218 8.733 10.091 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.155 5.155 3 N -0.153 5.153 4 C -0.131 4.131 5 C -0.248 4.248 6 C 0.013 3.987 7 N -0.312 5.312 8 C -0.031 4.031 9 C 0.033 3.967 10 C -0.198 4.198 11 C -0.185 4.185 12 C -0.547 4.547 13 H 0.049 0.951 14 C -0.179 4.179 15 N -0.590 5.590 16 Si 0.770 3.230 17 H -0.216 1.216 18 H -0.246 1.246 19 H -0.134 1.134 20 C -0.008 4.008 21 C -0.136 4.136 22 C -0.192 4.192 23 C -0.197 4.197 24 H 0.099 0.901 25 H 0.130 0.870 26 H 0.111 0.889 27 H 0.211 0.789 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.157 0.843 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.146 0.854 41 H 0.118 0.882 42 H 0.142 0.858 43 H 0.128 0.872 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.746 10.238 9.840 25.971 hybrid contribution 0.953 -1.390 -0.509 1.761 sum -20.793 8.847 9.331 24.448 Atomic orbital electron populations 1.22251 0.72692 1.05865 1.04432 1.48637 1.07478 1.02724 1.56663 1.77287 1.02285 1.08984 1.26735 1.24017 0.95386 0.94965 0.98751 1.19779 0.93842 0.93913 1.17246 1.20049 0.93712 0.95617 0.89288 1.60589 1.06659 1.42616 1.21343 1.21620 0.92329 0.93117 0.95993 1.18475 0.92963 0.92179 0.93043 1.22231 0.97723 0.99469 1.00389 1.22041 1.00884 0.98504 0.97080 1.21232 1.11334 1.28113 0.94017 0.95091 1.25761 0.95366 0.94088 1.02710 1.70103 1.34944 1.26399 1.27530 0.86453 0.82261 0.75839 0.78492 1.21617 1.24576 1.13437 1.20199 0.90444 0.89493 1.00631 1.20545 1.07189 0.88522 0.97337 1.23191 0.92251 1.03585 1.00176 1.23032 0.98629 1.00029 0.97990 0.90064 0.86958 0.88925 0.78928 0.94590 0.90939 0.84344 0.92919 0.96754 0.92451 0.94142 0.93804 0.94304 0.96252 0.91523 0.92926 0.85435 0.88181 0.85786 0.87157 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 11.31 127.77 1.44 2.60 16 2 N -0.37 -8.33 4.01 -356.03 -1.43 -9.76 16 3 N -0.33 -9.02 12.58 -57.03 -0.72 -9.74 16 4 C 0.05 1.41 11.96 85.24 1.02 2.43 16 5 C -0.24 -6.09 5.61 -20.15 -0.11 -6.20 16 6 C 0.14 3.86 5.87 85.56 0.50 4.36 16 7 N -0.68 -21.32 5.71 -517.93 -2.96 -24.28 16 8 C 0.10 3.77 4.57 86.30 0.39 4.16 16 9 C 0.03 1.53 0.57 -52.93 -0.03 1.50 16 10 C -0.14 -5.64 7.24 71.98 0.52 -5.12 16 11 C -0.13 -5.45 7.61 71.98 0.55 -4.91 16 12 C -0.51 -28.48 8.62 25.60 0.22 -28.26 16 13 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 14 C 0.02 1.01 5.34 84.66 0.45 1.47 16 15 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 16 Si 0.94 45.38 22.76 68.60 1.56 46.95 16 17 H -0.29 -13.89 7.07 99.48 0.70 -13.19 16 18 H -0.32 -15.55 7.11 99.48 0.71 -14.84 16 19 H -0.21 -8.96 4.61 99.48 0.46 -8.50 16 20 C 0.12 2.74 6.37 41.40 0.26 3.00 16 21 C -0.12 -1.99 5.68 -11.54 -0.07 -2.05 16 22 C -0.16 -1.77 8.72 30.62 0.27 -1.50 16 23 C -0.16 -2.48 9.32 30.62 0.29 -2.19 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.11 0.94 5.12 -2.39 -0.01 0.93 16 26 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.19 4.26 8.06 -2.91 -0.02 4.23 16 28 H 0.04 0.94 7.06 -2.39 -0.02 0.92 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.34 10.15 6.97 -89.70 -0.63 9.53 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 1.94 7.03 -2.38 -0.02 1.92 16 34 H 0.04 1.73 4.06 -2.39 -0.01 1.72 16 35 H 0.04 1.69 8.12 -2.38 -0.02 1.67 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.02 0.85 2.39 -2.39 -0.01 0.84 16 38 H 0.07 2.52 7.60 -2.39 -0.02 2.50 16 39 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.13 2.16 8.14 -2.39 -0.02 2.15 16 41 H 0.10 1.05 7.05 -2.39 -0.02 1.03 16 42 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.09 1.57 8.02 -2.38 -0.02 1.55 16 Total: -1.00 -69.75 337.66 2.59 -67.16 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.12 Total: 19.93 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 5.71 Total: -30.71 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -4.80 Total: -103.33 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.56 Total: 46.95 kcal Total: -69.75 2.59 -67.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894854446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.473 kcal (2) G-P(sol) polarization free energy of solvation -69.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds