Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46870 * 2 1 4 4 C 1.34944 * 126.03518 * 125.00263 * 3 2 1 5 5 C 1.35322 * 107.74510 * 179.97438 * 4 3 2 6 6 C 1.50693 * 126.04158 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47430 * 106.22923 * 6 5 4 8 8 C 1.46848 * 111.00334 * 292.25521 * 7 6 5 9 9 C 1.53035 * 109.52286 * 174.16071 * 8 7 6 10 10 C 1.53114 * 109.28099 * 59.18228 * 9 8 7 11 11 C 1.53123 * 109.15720 * 302.34009 * 10 9 8 12 12 H 1.08999 * 109.53877 * 297.69655 * 11 10 9 13 13 C 1.50703 * 109.50295 * 177.59597 * 11 10 9 14 14 H 1.08000 * 120.00126 * 245.79059 * 13 11 10 15 15 C 1.37877 * 120.00053 * 65.78971 * 13 11 10 16 16 N 1.31517 * 119.99812 * 9.48575 * 15 13 11 17 17 Si 1.86797 * 120.00225 * 189.48593 * 15 13 11 18 18 H 1.48493 * 109.47306 * 94.98827 * 17 15 13 19 19 H 1.48501 * 109.47058 * 214.99263 * 17 15 13 20 20 H 1.48502 * 109.46892 * 334.98947 * 17 15 13 21 21 C 1.46852 * 111.00045 * 168.04266 * 7 6 5 22 22 C 1.39869 * 107.91872 * 359.97438 * 5 4 3 23 23 C 1.50704 * 125.89987 * 180.02562 * 22 5 4 24 24 N 1.30841 * 108.20375 * 359.97438 * 22 5 4 25 25 H 1.09000 * 109.47361 * 300.00394 * 1 2 3 26 26 H 1.08999 * 109.47440 * 60.00503 * 1 2 3 27 27 H 1.09005 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46862 * 239.99775 * 2 1 3 29 29 H 1.09001 * 109.46646 * 119.99950 * 2 1 3 30 30 H 1.08003 * 126.13292 * 0.25904 * 4 3 2 31 31 H 1.08995 * 109.47307 * 226.23484 * 6 5 4 32 32 H 1.09006 * 109.47157 * 346.23075 * 6 5 4 33 33 H 1.08999 * 109.45833 * 294.17455 * 8 7 6 34 34 H 1.09000 * 109.45947 * 54.14012 * 8 7 6 35 35 H 1.08998 * 109.50268 * 299.23656 * 9 8 7 36 36 H 1.09001 * 109.50224 * 179.11964 * 9 8 7 37 37 H 1.09002 * 109.52444 * 182.44134 * 10 9 8 38 38 H 1.08996 * 109.52657 * 62.24551 * 10 9 8 39 39 H 0.96996 * 119.99940 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.46144 * 305.85572 * 21 7 6 41 41 H 1.08996 * 109.45910 * 65.82543 * 21 7 6 42 42 H 1.08998 * 109.47174 * 94.76061 * 23 22 5 43 43 H 1.08995 * 109.46953 * 214.76138 * 23 22 5 44 44 H 1.08999 * 109.46767 * 334.76231 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9210 0.8939 5 6 3.0720 3.2135 0.5457 6 6 3.9550 4.1998 1.2656 7 7 5.1747 4.4297 0.4798 8 6 6.0132 3.2247 0.4449 9 6 7.1973 3.4527 -0.4974 10 6 8.0130 4.6507 -0.0036 11 6 7.1048 5.8813 0.0696 12 1 6.7344 6.1208 -0.9272 13 6 7.8853 7.0512 0.6109 14 1 7.6257 7.4768 1.5690 15 6 8.9310 7.5784 -0.1169 16 7 9.1311 7.1890 -1.3571 17 14 10.0634 8.8456 0.6584 18 1 11.2598 8.1651 1.2158 19 1 10.4874 9.8270 -0.3723 20 1 9.3432 9.5521 1.7481 21 6 5.9234 5.5829 0.9956 22 6 2.3133 3.4721 -0.6006 23 6 2.2372 4.7877 -1.3317 24 7 1.6819 2.3742 -0.9291 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3219 1.4116 1.7338 31 1 3.4207 5.1415 1.3912 32 1 4.2230 3.8009 2.2440 33 1 6.3831 3.0106 1.4476 34 1 5.4222 2.3812 0.0882 35 1 6.8284 3.6534 -1.5033 36 1 7.8280 2.5638 -0.5111 37 1 8.8326 4.8436 -0.6959 38 1 8.4145 4.4349 0.9865 39 1 9.8670 7.5595 -1.8690 40 1 5.2672 6.4522 1.0386 41 1 6.2937 5.3577 1.9956 42 1 2.9559 4.7900 -2.1512 43 1 1.2318 4.9244 -1.7298 44 1 2.4689 5.6000 -0.6429 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895313509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = 45.229284 kcal Electronic energy + Delta-G solvation = -21986.444624 eV Core-core repulsion = 18938.913417 eV Total energy + Delta-G solvation = -3047.531207 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.16756 -39.61417 -36.07631 -35.23232 -33.66815 -32.25745 -31.66357 -30.84803 -28.56231 -26.83153 -26.65262 -23.88781 -23.36489 -22.91742 -21.52541 -20.33553 -20.04027 -18.38245 -17.58228 -16.76091 -16.50246 -16.02531 -15.73704 -15.36751 -15.04723 -14.91304 -14.70207 -14.31079 -14.19290 -13.94006 -13.74965 -13.49257 -13.32891 -12.99935 -12.86956 -12.80723 -12.79681 -12.70721 -12.51449 -12.30229 -12.09047 -11.86420 -11.67715 -11.40557 -11.23851 -10.77477 -10.62940 -10.37444 -10.05334 -9.24111 -8.93429 -8.08364 -6.16787 1.01598 1.42585 1.43764 1.53920 1.71053 1.83678 2.46180 3.21953 3.32640 3.63119 3.97823 4.10119 4.16958 4.20164 4.27394 4.32852 4.39524 4.44622 4.47563 4.66771 4.68646 4.76263 4.81912 4.84226 4.87311 4.92109 4.94873 5.02793 5.12361 5.14654 5.18194 5.22728 5.25644 5.31665 5.43499 5.51148 5.67934 5.83899 6.02244 6.10023 6.25279 6.26595 6.49552 6.55483 6.88052 6.97516 7.49743 9.00422 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037505 B = 0.003674 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.383358 B = 7618.962060 C = 7807.458141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 N -0.376 5.376 4 C 0.064 3.936 5 C -0.239 4.239 6 C 0.138 3.862 7 N -0.542 5.542 8 C 0.078 3.922 9 C -0.110 4.110 10 C -0.096 4.096 11 C 0.053 3.947 12 H -0.001 1.001 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.950 3.050 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.266 1.266 21 C 0.084 3.916 22 C 0.080 3.920 23 C -0.063 4.063 24 N -0.333 5.333 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.202 0.798 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.685 -14.962 5.944 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.004 3.996 3 N -0.158 5.158 4 C -0.084 4.084 5 C -0.250 4.250 6 C 0.010 3.990 7 N -0.267 5.267 8 C -0.050 4.050 9 C -0.147 4.147 10 C -0.134 4.134 11 C 0.034 3.966 12 H 0.017 0.983 13 C -0.572 4.572 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.557 5.557 17 Si 0.775 3.225 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.044 4.044 22 C -0.085 4.085 23 C -0.122 4.122 24 N -0.157 5.157 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.144 0.856 30 H 0.218 0.782 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.589 -15.548 4.502 22.473 hybrid contribution 1.750 1.096 1.262 2.420 sum -13.840 -14.452 5.764 20.823 Atomic orbital electron populations 1.21995 0.93619 1.03860 1.02059 1.22010 0.96275 0.76019 1.05345 1.48831 1.35769 1.10694 1.20499 1.22760 0.94922 0.93915 0.96782 1.19922 1.07626 0.95864 1.01637 1.20194 0.88846 0.97039 0.92890 1.61874 1.06347 1.04539 1.53901 1.21845 0.93399 0.92369 0.97411 1.21559 0.96556 0.97865 0.98770 1.21399 0.98626 0.95230 0.98189 1.18570 0.91300 0.92498 0.94223 0.98266 1.21524 1.15464 1.15725 1.04481 0.92866 1.25710 0.99247 0.98581 0.94846 1.70119 1.30908 1.45520 1.09181 0.85675 0.79402 0.78997 0.78386 1.20281 1.21192 1.19024 1.21957 0.94984 0.91864 0.95576 1.22411 0.95238 0.95365 0.95535 1.20068 1.02188 0.90422 0.99495 1.77170 1.25970 0.97423 1.15126 0.92802 0.93420 0.88224 0.89642 0.85561 0.78169 0.90664 0.93684 0.95204 0.90847 0.93929 0.91514 0.94642 0.94971 0.93195 0.92413 0.96384 0.91554 0.90755 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 10.10 71.98 0.73 -1.29 16 2 C 0.12 1.67 7.23 86.38 0.62 2.30 16 3 N -0.38 -8.57 3.68 -348.06 -1.28 -9.85 16 4 C 0.06 1.40 10.89 83.54 0.91 2.31 16 5 C -0.24 -6.58 4.63 -20.15 -0.09 -6.67 16 6 C 0.14 4.00 5.07 85.55 0.43 4.43 16 7 N -0.54 -19.43 4.63 -900.93 -4.17 -23.60 16 8 C 0.08 2.62 5.31 86.32 0.46 3.08 16 9 C -0.11 -4.31 6.09 30.64 0.19 -4.12 16 10 C -0.10 -4.61 5.09 30.67 0.16 -4.45 16 11 C 0.05 2.72 2.13 -11.48 -0.02 2.69 16 12 H 0.00 -0.05 8.08 -2.39 -0.02 -0.07 16 13 C -0.53 -29.75 8.48 25.60 0.22 -29.53 16 14 H 0.05 2.90 7.77 -2.91 -0.02 2.87 16 15 C 0.01 0.84 5.23 84.65 0.44 1.29 16 16 N -0.92 -54.73 12.20 21.45 0.26 -54.47 16 17 Si 0.95 44.14 29.55 68.60 2.03 46.17 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C 0.08 3.51 4.68 86.33 0.40 3.91 16 22 C 0.08 2.41 7.22 43.10 0.31 2.72 16 23 C -0.06 -1.78 10.30 71.24 0.73 -1.04 16 24 N -0.33 -9.90 12.42 -47.38 -0.59 -10.49 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.13 0.86 8.07 -2.39 -0.02 0.85 16 30 H 0.20 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.08 2.16 7.60 -2.39 -0.02 2.14 16 32 H 0.05 1.16 8.09 -2.38 -0.02 1.14 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 2.27 6.82 -2.39 -0.02 2.25 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.03 1.92 7.00 -2.39 -0.02 1.90 16 38 H 0.03 1.49 8.14 -2.39 -0.02 1.48 16 39 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.06 2.41 7.99 -2.39 -0.02 2.39 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 2.15 7.56 -2.39 -0.02 2.13 16 Total: -1.00 -68.05 351.14 2.68 -65.38 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.94 Total: 11.24 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 5.49 Total: -24.37 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -5.78 Total: -98.41 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -68.05 2.68 -65.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895313509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.605 kcal (2) G-P(sol) polarization free energy of solvation -68.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds