Wall clock time and date at job start Mon Mar 30 2020 02:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46496 * 109.47484 * 295.00296 * 13 2 1 15 15 C 1.40795 * 120.00457 * 180.02562 * 14 13 2 16 16 C 1.40229 * 126.06532 * 0.02562 * 15 14 13 17 17 N 1.30859 * 108.36566 * 179.97438 * 16 15 14 18 18 N 1.40082 * 108.35945 * 359.97438 * 17 16 15 19 19 C 1.46498 * 126.06961 * 179.97438 * 18 17 16 20 20 C 1.54267 * 110.03054 * 212.19252 * 19 18 17 21 21 C 1.54890 * 104.19661 * 217.10367 * 20 19 18 22 22 C 1.54894 * 102.74679 * 37.94907 * 21 20 19 23 23 C 1.53873 * 110.03069 * 95.03258 * 19 18 17 24 24 C 1.35701 * 126.07027 * 179.71224 * 15 14 13 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 0.97005 * 119.99584 * 359.97438 * 14 13 2 34 34 H 1.07997 * 125.81493 * 359.96381 * 16 15 14 35 35 H 1.08997 * 110.01839 * 333.63758 * 19 18 17 36 36 H 1.08993 * 110.49298 * 335.79058 * 20 19 18 37 37 H 1.09007 * 110.48549 * 98.43142 * 20 19 18 38 38 H 1.08994 * 110.76163 * 279.62838 * 21 20 19 39 39 H 1.09002 * 110.91291 * 156.33113 * 21 20 19 40 40 H 1.08995 * 110.48754 * 203.37887 * 22 21 20 41 41 H 1.09002 * 110.59826 * 80.78487 * 22 21 20 42 42 H 1.09003 * 110.02916 * 238.56914 * 23 19 18 43 43 H 1.08997 * 110.03513 * 359.97438 * 23 19 18 44 44 H 1.08002 * 126.22381 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6523 0.0353 2.4424 15 6 2.0116 -0.4331 3.7206 16 6 2.7361 -1.6012 3.9982 17 7 2.8743 -1.7021 5.2956 18 7 2.2444 -0.6029 5.8932 19 6 2.1646 -0.3308 7.3305 20 6 0.8423 0.3928 7.6587 21 6 1.2271 1.4025 8.7685 22 6 2.6294 1.8845 8.3206 23 6 3.3008 0.6176 7.7513 24 6 1.7234 0.1688 4.9022 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9246 -1.8413 -4.7316 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.1487 0.8594 2.3517 34 1 3.1151 -2.2988 3.2661 35 1 2.2298 -1.2634 7.8909 36 1 0.4657 0.9166 6.7802 37 1 0.1011 -0.3159 8.0283 38 1 1.2800 0.9087 9.7387 39 1 0.5239 2.2348 8.7981 40 1 3.1925 2.2643 9.1731 41 1 2.5436 2.6501 7.5495 42 1 3.9170 0.1456 8.5166 43 1 3.9118 0.8752 6.8863 44 1 1.1784 1.0921 5.0320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896696463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:18 Heat of formation + Delta-G solvation = 38.087361 kcal Electronic energy + Delta-G solvation = -20957.278017 eV Core-core repulsion = 17909.437113 eV Total energy + Delta-G solvation = -3047.840904 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.06740 -38.96947 -38.04497 -35.38995 -33.82589 -32.59242 -30.33494 -29.65917 -28.79170 -27.85402 -26.70735 -24.57462 -23.19007 -21.90849 -20.99534 -20.97900 -20.25077 -18.50126 -18.31484 -16.84986 -16.66797 -16.45681 -16.02963 -15.64352 -15.41740 -15.32708 -14.76776 -14.42098 -14.27331 -14.20195 -13.76178 -13.41529 -13.21803 -12.89656 -12.78461 -12.74158 -12.54461 -12.23603 -12.08778 -12.02585 -11.98811 -11.81919 -11.63807 -11.56827 -11.47059 -11.12006 -10.98280 -10.81121 -10.51588 -10.17589 -8.15647 -7.89915 -6.24586 0.98689 1.41992 1.42718 1.53483 1.62434 2.07502 2.43255 2.83895 3.18259 3.45559 3.59756 3.90862 3.99344 4.12037 4.18520 4.28405 4.32121 4.42082 4.45466 4.46739 4.50411 4.69306 4.77558 4.83213 4.87061 4.90265 4.94028 5.02838 5.03766 5.13674 5.20445 5.26457 5.26712 5.36502 5.43049 5.49568 5.51600 5.57595 5.82250 5.90105 6.25407 6.29527 6.56917 6.79696 6.91621 7.19910 7.43649 8.96499 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041070 B = 0.002678 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.594592 B =10452.069449 C =10731.265760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.156 3.844 14 N -0.737 5.737 15 C 0.052 3.948 16 C -0.009 4.009 17 N -0.308 5.308 18 N -0.362 5.362 19 C 0.156 3.844 20 C -0.131 4.131 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.026 4.026 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.038 0.962 28 H -0.011 1.011 29 H -0.007 1.007 30 H 0.261 0.739 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.402 0.598 34 H 0.177 0.823 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 7.236 26.537 27.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.082 0.918 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.186 1.186 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.056 4.056 16 C -0.196 4.196 17 N -0.132 5.132 18 N -0.150 5.150 19 C 0.055 3.945 20 C -0.170 4.170 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.173 4.173 24 C -0.174 4.174 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.007 0.993 29 H 0.011 0.989 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.238 0.762 34 H 0.194 0.806 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.352 6.294 27.388 28.301 hybrid contribution -0.211 0.560 -2.134 2.217 sum -3.563 6.854 25.254 26.409 Atomic orbital electron populations 1.21606 0.94557 1.00845 1.00929 1.21167 0.96621 0.99097 0.93261 0.91968 1.18973 0.94405 0.94765 0.92322 1.21634 1.34412 1.08571 0.91937 0.91836 1.25950 0.95336 0.96085 1.02677 1.70102 1.40296 1.22975 1.24260 0.85514 0.79021 0.78343 0.78575 1.20022 1.21119 1.18603 1.21009 0.97536 0.94415 0.83925 1.43762 1.65140 1.28614 1.00072 1.17962 1.04339 0.96514 0.86801 1.23667 1.03236 0.99260 0.93472 1.77096 1.19427 1.08543 1.08086 1.48650 1.43016 1.17039 1.06319 1.22194 0.97599 1.00160 0.74570 1.22816 0.94698 0.98921 1.00562 1.22462 0.96420 0.98444 0.97860 1.22362 0.96409 0.96088 1.00980 1.22602 0.97109 0.96567 1.01030 1.21841 1.08135 1.01157 0.86299 0.91619 0.93492 0.94258 0.99260 0.98887 0.92983 0.94024 0.94550 0.76236 0.80578 0.88265 0.90207 0.89837 0.89898 0.89581 0.89950 0.91583 0.89791 0.92981 0.79051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.88 71.98 0.64 -3.69 16 2 C -0.08 -3.25 2.37 -10.79 -0.03 -3.28 16 3 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -29.36 8.41 25.60 0.22 -29.14 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 8 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16 9 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 13 C 0.16 5.42 5.02 86.38 0.43 5.85 16 14 N -0.74 -21.38 5.53 -339.93 -1.88 -23.26 16 15 C 0.05 1.49 6.96 37.60 0.26 1.75 16 16 C -0.01 -0.29 11.34 85.32 0.97 0.68 16 17 N -0.31 -9.34 12.57 -56.77 -0.71 -10.05 16 18 N -0.36 -8.76 3.47 -322.91 -1.12 -9.88 16 19 C 0.16 2.61 4.01 45.72 0.18 2.79 16 20 C -0.13 -1.51 6.37 31.67 0.20 -1.31 16 21 C -0.11 -0.87 6.91 31.89 0.22 -0.65 16 22 C -0.12 -1.19 6.83 31.67 0.22 -0.97 16 23 C -0.13 -1.96 6.59 31.32 0.21 -1.75 16 24 C -0.03 -0.62 10.49 83.46 0.88 0.25 16 25 H 0.06 1.87 7.18 -2.39 -0.02 1.85 16 26 H 0.05 1.79 6.95 -2.39 -0.02 1.77 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.40 10.26 7.78 -92.70 -0.72 9.54 16 34 H 0.18 5.21 7.90 -2.91 -0.02 5.19 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 0.97 5.96 -2.39 -0.01 0.95 16 37 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 1.01 7.92 -2.39 -0.02 1.00 16 44 H 0.19 3.30 6.92 -2.91 -0.02 3.28 16 Total: -1.00 -67.05 351.63 3.83 -63.22 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.25 Total: 17.98 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 4.99 Total: -27.35 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -3.43 Total: -100.08 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -67.05 3.83 -63.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896696463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.306 kcal (2) G-P(sol) polarization free energy of solvation -67.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds