Wall clock time and date at job start Mon Mar 30 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47527 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00126 * 2 1 3 5 5 C 1.50696 * 109.46919 * 294.99716 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.53004 * 109.47082 * 240.00266 * 2 1 3 14 14 N 1.46899 * 109.47039 * 64.99745 * 13 2 1 15 15 C 1.46907 * 110.99495 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.35312 * 126.12988 * 94.68688 * 16 15 14 18 18 C 1.39871 * 107.92551 * 179.90219 * 17 16 15 19 19 C 1.50694 * 125.90143 * 180.14276 * 18 17 16 20 20 C 1.53007 * 117.49918 * 344.03555 * 19 18 17 21 21 C 1.53001 * 117.50083 * 275.37650 * 19 18 17 22 22 N 1.30841 * 108.19936 * 0.37112 * 18 17 16 23 23 N 1.34957 * 126.12684 * 275.00393 * 16 15 14 24 24 C 1.46494 * 126.03416 * 359.93732 * 23 16 15 25 25 H 1.09000 * 109.47048 * 300.00084 * 1 2 3 26 26 H 1.09001 * 109.46743 * 59.99815 * 1 2 3 27 27 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46497 * 174.99981 * 4 2 1 29 29 H 1.08999 * 109.46623 * 55.00045 * 4 2 1 30 30 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 31 31 H 1.08995 * 109.46860 * 185.00644 * 13 2 1 32 32 H 1.09001 * 109.46604 * 304.99920 * 13 2 1 33 33 H 1.00900 * 111.00009 * 56.05390 * 14 13 2 34 34 H 1.09003 * 109.47363 * 300.00360 * 15 14 13 35 35 H 1.09000 * 109.46789 * 60.00422 * 15 14 13 36 36 H 1.08004 * 126.03643 * 0.04442 * 17 16 15 37 37 H 1.09005 * 115.55172 * 129.70631 * 19 18 17 38 38 H 1.08992 * 117.49653 * 0.02562 * 20 19 18 39 39 H 1.09000 * 117.49695 * 145.02209 * 20 19 18 40 40 H 1.08997 * 117.50142 * 214.97908 * 21 19 18 41 41 H 1.09000 * 117.49807 * 359.97152 * 21 19 18 42 42 H 1.09004 * 109.47162 * 90.00969 * 24 23 16 43 43 H 1.09003 * 109.47294 * 210.00271 * 24 23 16 44 44 H 1.08998 * 109.47791 * 330.00486 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0807 0.9746 2.3756 7 6 1.9932 -0.4018 3.7283 8 7 2.6815 -1.5157 3.8507 9 14 1.4997 0.5634 5.2496 10 1 0.0197 0.6701 5.3095 11 1 1.9946 -0.1368 6.4621 12 1 2.0919 1.9238 5.1865 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1247 -0.6271 -3.6673 16 6 1.7088 0.1787 -4.8709 17 6 2.4589 1.1081 -5.5068 18 6 1.7050 1.6159 -6.5699 19 6 2.1539 2.6724 -7.5462 20 6 3.3768 3.5103 -7.1676 21 6 1.9799 4.1354 -7.1335 22 7 0.5408 1.0186 -6.5673 23 7 0.5191 0.1069 -5.5040 24 6 -0.5976 -0.7701 -5.1432 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1263 -0.7995 1.2055 29 1 1.6053 -1.7198 1.2950 30 1 2.9380 -2.0168 3.0608 31 1 3.1263 -0.7995 -1.2056 32 1 1.6054 -1.7198 -1.2952 33 1 1.9882 0.9873 -2.3967 34 1 3.2116 -0.7051 -3.6406 35 1 1.6903 -1.6248 -3.7297 36 1 3.4633 1.4037 -5.2419 37 1 2.0184 2.4271 -8.5996 38 1 3.8568 3.2971 -6.2126 39 1 4.0456 3.8166 -7.9720 40 1 1.7303 4.8526 -7.9154 41 1 1.5403 4.3337 -6.1560 42 1 -1.2482 -0.2573 -4.4348 43 1 -1.1644 -1.0237 -6.0391 44 1 -0.2112 -1.6817 -4.6876 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897224557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:58 Heat of formation + Delta-G solvation = 79.570669 kcal Electronic energy + Delta-G solvation = -20932.113039 eV Core-core repulsion = 17886.070986 eV Total energy + Delta-G solvation = -3046.042053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42143 -37.49165 -36.97466 -34.45913 -32.97827 -32.23553 -30.29374 -26.96928 -26.67102 -26.19498 -24.14740 -23.30795 -22.61054 -22.30616 -20.14993 -19.66843 -19.08468 -16.85598 -16.72705 -15.99018 -15.59297 -15.27786 -14.59439 -14.45695 -14.34060 -14.00342 -13.70466 -13.52348 -13.11471 -12.80617 -12.58965 -12.32886 -12.00778 -11.83947 -11.73800 -11.63785 -11.38145 -11.03575 -11.02641 -10.83108 -10.70931 -10.38889 -10.28062 -10.10226 -9.86930 -9.52775 -9.13935 -8.60016 -8.49319 -8.33639 -8.31119 -6.34088 -4.02394 1.73831 2.39852 2.58235 3.44461 3.46177 3.62286 3.64770 4.19278 4.28318 4.54978 4.59050 4.64640 4.72710 4.76159 4.97423 5.06992 5.16922 5.34088 5.38452 5.41499 5.43598 5.47257 5.51443 5.60018 5.66030 5.70589 5.88204 5.91190 5.97948 6.09155 6.22849 6.36469 6.52228 6.54386 6.80443 6.91019 7.00219 7.05463 7.13761 7.36697 7.43105 7.56066 7.67290 8.24703 8.48603 8.90842 9.68969 11.06351 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.002915 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.363868 B = 9601.783336 C =10052.398720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 H 0.056 0.944 4 C 0.015 3.985 5 C -0.594 4.594 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.915 5.915 9 Si 1.067 2.933 10 H -0.288 1.288 11 H -0.283 1.283 12 H -0.288 1.288 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.117 3.883 16 C 0.099 3.901 17 C -0.267 4.267 18 C 0.101 3.899 19 C -0.079 4.079 20 C -0.166 4.166 21 C -0.165 4.165 22 N -0.294 5.294 23 N -0.359 5.359 24 C 0.105 3.895 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.003 0.997 29 H 0.007 0.993 30 H 0.268 0.732 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.344 0.656 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 4.934 -22.272 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.023 4.023 5 C -0.633 4.633 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.552 5.552 9 Si 0.895 3.105 10 H -0.215 1.215 11 H -0.208 1.208 12 H -0.215 1.215 13 C -0.065 4.065 14 N -0.314 5.314 15 C -0.013 4.013 16 C -0.030 4.030 17 C -0.297 4.297 18 C -0.064 4.064 19 C -0.099 4.099 20 C -0.203 4.203 21 C -0.203 4.203 22 N -0.116 5.116 23 N -0.140 5.140 24 C -0.037 4.037 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.022 0.978 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.161 0.839 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.979 4.424 -21.162 21.824 hybrid contribution 1.567 0.121 -1.215 1.986 sum -1.413 4.544 -22.377 22.878 Atomic orbital electron populations 1.21574 0.95496 1.00496 1.00328 1.21065 0.96147 0.98926 0.93276 0.92599 1.19244 0.95150 0.95595 0.92287 1.22028 1.38738 1.10258 0.92258 0.93211 1.25826 0.94678 0.97151 1.01391 1.70784 1.35884 1.15064 1.33478 0.83572 0.76070 0.75167 0.75662 1.21474 1.20835 1.21491 1.22200 0.97407 0.97658 0.89235 1.60555 1.64011 1.06150 1.00702 1.20486 0.98468 0.96409 0.85965 1.20982 0.86868 0.99012 0.96125 1.21040 1.02821 1.04616 1.01212 1.21241 0.91733 0.97212 0.96233 1.20104 1.03323 0.89333 0.97105 1.23014 0.90877 1.02785 1.03649 1.22995 0.99759 0.94180 1.03387 1.77266 1.20434 1.06426 1.07455 1.48357 1.11942 1.31131 1.22600 1.21832 0.87417 0.92669 1.01734 0.92575 0.93935 0.94252 0.97829 0.97482 0.92202 0.95452 0.91435 0.83825 0.92607 0.89990 0.83879 0.86507 0.88196 0.88194 0.88298 0.88541 0.90239 0.89756 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 2 C -0.08 -1.50 2.48 -90.62 -0.22 -1.72 16 3 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -16.71 8.41 -34.44 -0.29 -17.00 16 6 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.92 -28.07 13.65 55.43 0.76 -27.31 16 9 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.02 5.07 -3.82 -0.02 1.00 16 14 N -0.68 -9.32 5.94 -115.05 -0.68 -10.00 16 15 C 0.12 1.36 5.86 -4.97 -0.03 1.33 16 16 C 0.10 1.23 6.44 -82.26 -0.53 0.70 16 17 C -0.27 -3.28 10.02 -40.01 -0.40 -3.68 16 18 C 0.10 1.28 6.85 -82.41 -0.56 0.72 16 19 C -0.08 -0.77 6.33 -91.77 -0.58 -1.35 16 20 C -0.17 -1.29 10.02 -26.69 -0.27 -1.56 16 21 C -0.17 -1.41 10.24 -26.69 -0.27 -1.68 16 22 N -0.29 -4.16 12.58 33.67 0.42 -3.74 16 23 N -0.36 -4.61 4.01 -63.89 -0.26 -4.87 16 24 C 0.10 1.01 11.27 59.84 0.67 1.69 16 25 H 0.06 1.17 6.95 -51.93 -0.36 0.81 16 26 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.00 0.09 8.00 -51.93 -0.42 -0.32 16 29 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 30 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.34 4.73 8.72 -39.29 -0.34 4.39 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.89 7.24 -51.93 -0.38 0.51 16 36 H 0.14 1.52 7.38 -52.48 -0.39 1.13 16 37 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 0.80 7.14 -51.93 -0.37 0.43 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.71 7.15 -51.93 -0.37 0.34 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -32.19 360.72 -9.34 -41.53 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.55 Total: 1.70 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.38 Total: -23.02 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.24 Total: -45.92 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.19 -9.34 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897224557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.097 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds