Wall clock time and date at job start Mon Mar 30 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47640 * 2 1 4 4 C 1.53006 * 109.46954 * 120.00487 * 2 1 3 5 5 C 1.50701 * 109.46693 * 294.99591 * 4 2 1 6 6 H 1.08004 * 120.00427 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99911 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00039 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99897 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47114 * 60.00165 * 9 7 5 11 11 H 1.48503 * 109.46984 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47297 * 300.00227 * 9 7 5 13 13 C 1.52997 * 109.47007 * 239.99685 * 2 1 3 14 14 N 1.46904 * 109.47125 * 65.00471 * 13 2 1 15 15 C 1.46896 * 111.00044 * 180.02562 * 14 13 2 16 16 C 1.50706 * 109.47020 * 180.02562 * 15 14 13 17 17 C 1.39864 * 125.89999 * 94.71066 * 16 15 14 18 18 C 1.35316 * 107.91828 * 179.86198 * 17 16 15 19 19 C 1.50704 * 126.12712 * 180.14439 * 18 17 16 20 20 C 1.52997 * 117.49839 * 34.04565 * 19 18 17 21 21 C 1.52997 * 117.50093 * 325.38587 * 19 18 17 22 22 N 1.34952 * 107.74600 * 0.40147 * 18 17 16 23 23 C 1.46497 * 126.03662 * 179.75302 * 22 18 17 24 24 N 1.30836 * 125.89591 * 275.02082 * 16 15 14 25 25 H 1.09006 * 109.46904 * 300.00024 * 1 2 3 26 26 H 1.08995 * 109.46919 * 60.00120 * 1 2 3 27 27 H 1.08997 * 109.47640 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47277 * 54.99524 * 4 2 1 29 29 H 1.09004 * 109.47224 * 174.99833 * 4 2 1 30 30 H 0.96997 * 120.00294 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.47331 * 305.00600 * 13 2 1 32 32 H 1.08999 * 109.47285 * 185.00251 * 13 2 1 33 33 H 1.00900 * 110.99884 * 56.04414 * 14 13 2 34 34 H 1.09000 * 109.47401 * 59.99871 * 15 14 13 35 35 H 1.09002 * 109.46966 * 299.99612 * 15 14 13 36 36 H 1.07995 * 126.04278 * 359.97438 * 17 16 15 37 37 H 1.08997 * 115.55124 * 179.71243 * 19 18 17 38 38 H 1.08999 * 117.49639 * 359.97438 * 20 19 18 39 39 H 1.08998 * 117.50354 * 145.02051 * 20 19 18 40 40 H 1.08996 * 117.50279 * 214.98253 * 21 19 18 41 41 H 1.09000 * 117.49727 * 359.97324 * 21 19 18 42 42 H 1.09003 * 109.46759 * 270.01771 * 23 22 18 43 43 H 1.08999 * 109.47396 * 30.01153 * 23 22 18 44 44 H 1.08996 * 109.47687 * 150.02155 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0800 0.9741 2.3758 7 6 1.9932 -0.4019 3.7283 8 7 2.6772 -1.5184 3.8511 9 14 1.4997 0.5633 5.2496 10 1 0.0197 0.6700 5.3096 11 1 1.9956 -0.1362 6.4621 12 1 2.0919 1.9237 5.1865 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1247 -0.6272 -3.6672 16 6 1.7089 0.1786 -4.8708 17 6 2.4887 1.1380 -5.5249 18 6 1.7637 1.6320 -6.5551 19 6 2.2129 2.6879 -7.5319 20 6 3.6933 2.7096 -7.9175 21 6 3.1241 3.7975 -7.0034 22 7 0.5641 1.0137 -6.5476 23 6 -0.5333 1.2503 -7.4888 24 7 0.5538 0.1057 -5.4810 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6053 -1.7198 1.2951 29 1 3.1263 -0.7997 1.2056 30 1 2.9250 -1.8410 4.7317 31 1 1.6053 -1.7199 -1.2951 32 1 3.1263 -0.7996 -1.2056 33 1 1.9883 0.9872 -2.3967 34 1 1.6903 -1.6250 -3.7296 35 1 3.2117 -0.7052 -3.6405 36 1 3.4928 1.4312 -5.2563 37 1 1.4886 2.9554 -8.3013 38 1 4.3424 1.9604 -7.4642 39 1 3.9430 2.9917 -8.9403 40 1 2.9995 4.7948 -7.4251 41 1 3.3983 3.7640 -5.9490 42 1 -1.1782 2.0403 -7.1038 43 1 -0.1258 1.5520 -8.4537 44 1 -1.1125 0.3349 -7.6092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897232197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:04 Heat of formation + Delta-G solvation = 85.214852 kcal Electronic energy + Delta-G solvation = -20715.509717 eV Core-core repulsion = 17669.712414 eV Total energy + Delta-G solvation = -3045.797303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43700 -37.48649 -36.80595 -34.47227 -32.99943 -31.71928 -29.93247 -28.06122 -26.66442 -25.51441 -24.06803 -23.60369 -22.77548 -22.08832 -20.12381 -19.52166 -18.84238 -17.19955 -16.26928 -15.66808 -15.50661 -15.23505 -14.63180 -14.48295 -14.31304 -14.06185 -13.87696 -13.22341 -12.86225 -12.73310 -12.53415 -12.27830 -12.09421 -11.93835 -11.56513 -11.43100 -11.29473 -11.23250 -11.02986 -10.79669 -10.71327 -10.45026 -10.23596 -10.18723 -9.62538 -9.21458 -9.01407 -8.88489 -8.53574 -8.27599 -8.02572 -5.92651 -3.93451 1.67842 2.36418 2.64415 3.38083 3.42070 3.44965 3.57300 4.07461 4.29040 4.48382 4.50762 4.55840 4.58320 4.74151 4.89406 4.94895 5.16290 5.24280 5.29856 5.32347 5.43039 5.53188 5.58553 5.70367 5.72190 5.73430 5.86432 5.96169 6.15203 6.24036 6.49741 6.57957 6.63850 6.78063 6.89343 7.09275 7.26862 7.27159 7.42531 7.68217 7.74787 7.78130 7.92323 8.08122 8.52429 9.12784 9.69511 11.18943 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.002707 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.979701 B =10342.594770 C =10603.747182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.065 3.935 14 N -0.680 5.680 15 C 0.138 3.862 16 C 0.087 3.913 17 C -0.266 4.266 18 C 0.114 3.886 19 C -0.106 4.106 20 C -0.161 4.161 21 C -0.159 4.159 22 N -0.375 5.375 23 C 0.102 3.898 24 N -0.273 5.273 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.016 0.984 29 H 0.013 0.987 30 H 0.260 0.740 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.339 0.661 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 8.024 -26.720 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.312 5.312 15 C 0.007 3.993 16 C -0.080 4.080 17 C -0.296 4.296 18 C -0.013 4.013 19 C -0.126 4.126 20 C -0.198 4.198 21 C -0.197 4.197 22 N -0.157 5.157 23 C -0.039 4.039 24 N -0.095 5.095 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.161 0.839 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.972 7.056 -26.749 27.734 hybrid contribution 1.387 1.074 0.886 1.965 sum -0.585 8.130 -25.863 27.117 Atomic orbital electron populations 1.21585 0.95739 1.00590 1.00087 1.21193 0.96013 0.98895 0.93952 0.92854 1.19121 0.95907 0.95586 0.90388 1.21216 1.34525 1.08279 0.91021 0.92636 1.25018 0.95381 0.95104 0.99055 1.69953 1.39094 1.21279 1.23432 0.86695 0.78903 0.80097 0.82518 1.20283 1.21399 1.20338 1.22176 0.97246 0.97786 0.89162 1.60470 1.64109 1.05796 1.00792 1.20216 0.97252 0.96592 0.85254 1.22178 0.91394 0.97341 0.97088 1.21020 1.02761 1.05252 1.00566 1.20061 0.87079 0.96517 0.97663 1.20408 0.94613 0.97808 0.99801 1.23084 0.93832 1.02129 1.00804 1.23094 1.01845 0.93977 1.00784 1.48404 1.11634 1.31110 1.24574 1.21793 0.88177 1.03376 0.90602 1.77446 1.20786 1.11677 0.99591 0.92875 0.93942 0.94152 0.96522 0.96890 0.93077 0.91373 0.95570 0.84354 0.89777 0.93458 0.83945 0.86903 0.87955 0.88103 0.88052 0.87824 0.90827 0.89887 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.89 37.16 0.33 -2.20 16 2 C -0.08 -1.73 2.48 -90.62 -0.22 -1.95 16 3 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.63 8.41 -34.44 -0.29 -14.92 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.06 1.16 5.07 -3.82 -0.02 1.14 16 14 N -0.68 -10.82 5.94 -115.05 -0.68 -11.50 16 15 C 0.14 1.93 6.25 -4.98 -0.03 1.90 16 16 C 0.09 1.24 6.73 -82.41 -0.55 0.68 16 17 C -0.27 -3.25 9.74 -40.01 -0.39 -3.64 16 18 C 0.11 1.25 6.62 -82.26 -0.54 0.71 16 19 C -0.11 -0.80 5.97 -91.77 -0.55 -1.35 16 20 C -0.16 -0.99 10.05 -26.70 -0.27 -1.26 16 21 C -0.16 -1.03 10.05 -26.70 -0.27 -1.30 16 22 N -0.38 -4.51 4.01 -63.89 -0.26 -4.76 16 23 C 0.10 0.76 11.22 59.85 0.67 1.43 16 24 N -0.27 -4.16 12.57 33.67 0.42 -3.73 16 25 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 26 H 0.04 0.81 7.75 -51.93 -0.40 0.41 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.34 5.20 8.72 -39.29 -0.34 4.86 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.11 0.65 7.24 -51.93 -0.38 0.27 16 38 H 0.10 0.68 7.94 -51.93 -0.41 0.27 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.76 7.95 -51.93 -0.41 0.34 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.39 7.22 -51.93 -0.37 0.01 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -33.17 362.96 -9.37 -42.54 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.68 Total: 0.25 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.36 Total: -18.64 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.22 Total: -46.66 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.17 -9.37 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897232197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.760 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds