Wall clock time and date at job start Mon Mar 30 2020 02:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47640 * 2 1 4 4 C 1.53006 * 109.46954 * 120.00487 * 2 1 3 5 5 C 1.50701 * 109.46693 * 294.99591 * 4 2 1 6 6 H 1.08004 * 120.00427 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99911 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00039 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99897 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47114 * 60.00165 * 9 7 5 11 11 H 1.48503 * 109.46984 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47297 * 300.00227 * 9 7 5 13 13 C 1.52997 * 109.47007 * 239.99685 * 2 1 3 14 14 N 1.46904 * 109.47125 * 65.00471 * 13 2 1 15 15 C 1.46896 * 111.00044 * 180.02562 * 14 13 2 16 16 C 1.50706 * 109.47020 * 180.02562 * 15 14 13 17 17 C 1.39864 * 125.89999 * 94.71066 * 16 15 14 18 18 C 1.35316 * 107.91828 * 179.86198 * 17 16 15 19 19 C 1.50704 * 126.12712 * 180.14439 * 18 17 16 20 20 C 1.52997 * 117.49839 * 34.04565 * 19 18 17 21 21 C 1.52997 * 117.50093 * 325.38587 * 19 18 17 22 22 N 1.34952 * 107.74600 * 0.40147 * 18 17 16 23 23 C 1.46497 * 126.03662 * 179.75302 * 22 18 17 24 24 N 1.30836 * 125.89591 * 275.02082 * 16 15 14 25 25 H 1.09006 * 109.46904 * 300.00024 * 1 2 3 26 26 H 1.08995 * 109.46919 * 60.00120 * 1 2 3 27 27 H 1.08997 * 109.47640 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47277 * 54.99524 * 4 2 1 29 29 H 1.09004 * 109.47224 * 174.99833 * 4 2 1 30 30 H 0.96997 * 120.00294 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.47331 * 305.00600 * 13 2 1 32 32 H 1.08999 * 109.47285 * 185.00251 * 13 2 1 33 33 H 1.00900 * 110.99884 * 56.04414 * 14 13 2 34 34 H 1.09000 * 109.47401 * 59.99871 * 15 14 13 35 35 H 1.09002 * 109.46966 * 299.99612 * 15 14 13 36 36 H 1.07995 * 126.04278 * 359.97438 * 17 16 15 37 37 H 1.08997 * 115.55124 * 179.71243 * 19 18 17 38 38 H 1.08999 * 117.49639 * 359.97438 * 20 19 18 39 39 H 1.08998 * 117.50354 * 145.02051 * 20 19 18 40 40 H 1.08996 * 117.50279 * 214.98253 * 21 19 18 41 41 H 1.09000 * 117.49727 * 359.97324 * 21 19 18 42 42 H 1.09003 * 109.46759 * 270.01771 * 23 22 18 43 43 H 1.08999 * 109.47396 * 30.01153 * 23 22 18 44 44 H 1.08996 * 109.47687 * 150.02155 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0800 0.9741 2.3758 7 6 1.9932 -0.4019 3.7283 8 7 2.6772 -1.5184 3.8511 9 14 1.4997 0.5633 5.2496 10 1 0.0197 0.6700 5.3096 11 1 1.9956 -0.1362 6.4621 12 1 2.0919 1.9237 5.1865 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1247 -0.6272 -3.6672 16 6 1.7089 0.1786 -4.8708 17 6 2.4887 1.1380 -5.5249 18 6 1.7637 1.6320 -6.5551 19 6 2.2129 2.6879 -7.5319 20 6 3.6933 2.7096 -7.9175 21 6 3.1241 3.7975 -7.0034 22 7 0.5641 1.0137 -6.5476 23 6 -0.5333 1.2503 -7.4888 24 7 0.5538 0.1057 -5.4810 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6053 -1.7198 1.2951 29 1 3.1263 -0.7997 1.2056 30 1 2.9250 -1.8410 4.7317 31 1 1.6053 -1.7199 -1.2951 32 1 3.1263 -0.7996 -1.2056 33 1 1.9883 0.9872 -2.3967 34 1 1.6903 -1.6250 -3.7296 35 1 3.2117 -0.7052 -3.6405 36 1 3.4928 1.4312 -5.2563 37 1 1.4886 2.9554 -8.3013 38 1 4.3424 1.9604 -7.4642 39 1 3.9430 2.9917 -8.9403 40 1 2.9995 4.7948 -7.4251 41 1 3.3983 3.7640 -5.9490 42 1 -1.1782 2.0403 -7.1038 43 1 -0.1258 1.5520 -8.4537 44 1 -1.1125 0.3349 -7.6092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897232197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:03 Heat of formation + Delta-G solvation = 64.853672 kcal Electronic energy + Delta-G solvation = -20716.392644 eV Core-core repulsion = 17669.712414 eV Total energy + Delta-G solvation = -3046.680230 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.31521 -38.46648 -37.90770 -35.95796 -34.47158 -33.36209 -30.79837 -29.42357 -28.42508 -26.76167 -25.50841 -24.38436 -23.79367 -23.22594 -21.25200 -20.65373 -20.05094 -18.47713 -17.95490 -16.71518 -16.57113 -16.44136 -15.96337 -15.71963 -15.45913 -15.26729 -14.78754 -14.57960 -14.28142 -13.95989 -13.55760 -13.43024 -13.27343 -13.23682 -12.98373 -12.73536 -12.61648 -12.40448 -12.38182 -12.20523 -11.99108 -11.87699 -11.67034 -11.48297 -11.25730 -11.08600 -10.93664 -10.51403 -9.98081 -9.43050 -9.30084 -8.15903 -6.24914 0.82404 1.40723 1.43727 1.51348 1.59859 1.67711 2.43383 3.04875 3.17304 3.32657 3.51408 3.56292 3.89196 4.00178 4.10034 4.12172 4.23345 4.28091 4.39631 4.44571 4.52860 4.58200 4.64145 4.68909 4.76166 4.82247 4.89422 4.94425 5.00352 5.04128 5.05385 5.27871 5.29232 5.33048 5.46066 5.50105 5.56567 5.63463 5.82210 5.90428 6.03623 6.13159 6.32874 6.44895 6.79068 6.90654 7.42991 8.96058 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.002707 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.979701 B =10342.594770 C =10603.747182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.079 3.921 14 N -0.681 5.681 15 C 0.142 3.858 16 C 0.072 3.928 17 C -0.285 4.285 18 C 0.120 3.880 19 C -0.118 4.118 20 C -0.152 4.152 21 C -0.157 4.157 22 N -0.378 5.378 23 C 0.091 3.909 24 N -0.318 5.318 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.034 0.966 28 H -0.010 1.010 29 H -0.010 1.010 30 H 0.262 0.738 31 H 0.063 0.937 32 H 0.028 0.972 33 H 0.343 0.657 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.153 0.847 37 H 0.135 0.865 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 10.072 -28.347 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.192 1.192 13 C -0.050 4.050 14 N -0.313 5.313 15 C 0.011 3.989 16 C -0.094 4.094 17 C -0.314 4.314 18 C -0.008 4.008 19 C -0.137 4.137 20 C -0.189 4.189 21 C -0.195 4.195 22 N -0.160 5.160 23 C -0.049 4.049 24 N -0.141 5.141 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.009 0.991 29 H 0.008 0.992 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.161 0.839 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.171 0.829 37 H 0.153 0.847 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.133 0.867 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.210 9.110 -28.395 29.903 hybrid contribution 1.454 0.448 1.293 1.997 sum -0.755 9.558 -27.102 28.748 Atomic orbital electron populations 1.21472 0.95084 1.00261 1.00157 1.21003 0.96397 0.98521 0.93239 0.92714 1.19003 0.94282 0.94647 0.92498 1.21617 1.34464 1.08613 0.92138 0.92202 1.25947 0.95268 0.96113 1.02609 1.70090 1.40224 1.22949 1.24343 0.85568 0.78871 0.78826 0.78193 1.19373 1.20942 1.19177 1.21875 0.97116 0.97244 0.88795 1.60370 1.64425 1.05912 1.00621 1.20172 0.98044 0.96113 0.84535 1.22190 0.91844 0.98066 0.97255 1.21213 1.03477 1.05458 1.01279 1.20603 0.86369 0.96266 0.97541 1.20600 0.95896 0.97362 0.99875 1.23164 0.92434 1.01512 1.01832 1.23159 1.01118 0.94776 1.00413 1.48738 1.12827 1.30276 1.24174 1.22157 0.87649 1.03854 0.91208 1.77332 1.21668 1.13739 1.01373 0.94278 0.92197 0.94678 0.99147 0.99190 0.92920 0.91886 0.95382 0.83864 0.90486 0.91940 0.82907 0.84689 0.88794 0.85938 0.86136 0.89053 0.89891 0.86692 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.62 8.89 71.98 0.64 -3.98 16 2 C -0.07 -3.10 2.48 -10.79 -0.03 -3.13 16 3 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.03 1.79 4.45 29.85 0.13 1.93 16 5 C -0.53 -30.65 8.41 25.60 0.22 -30.44 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 8 N -0.94 -58.05 13.29 21.45 0.28 -57.76 16 9 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 C 0.08 2.84 5.07 86.30 0.44 3.27 16 14 N -0.68 -21.46 5.94 -517.92 -3.08 -24.54 16 15 C 0.14 3.97 6.25 85.56 0.53 4.50 16 16 C 0.07 2.04 6.73 43.10 0.29 2.33 16 17 C -0.28 -6.75 9.74 21.99 0.21 -6.53 16 18 C 0.12 2.47 6.62 41.41 0.27 2.74 16 19 C -0.12 -1.44 5.97 -11.54 -0.07 -1.51 16 20 C -0.15 -1.45 10.05 30.62 0.31 -1.14 16 21 C -0.16 -1.63 10.05 30.62 0.31 -1.33 16 22 N -0.38 -8.64 4.01 -356.03 -1.43 -10.07 16 23 C 0.09 1.18 11.22 127.77 1.43 2.62 16 24 N -0.32 -9.64 12.57 -47.38 -0.60 -10.23 16 25 H 0.04 1.68 6.95 -2.38 -0.02 1.67 16 26 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 27 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 28 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.34 10.33 8.72 -89.69 -0.78 9.55 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 37 H 0.14 1.04 7.24 -2.39 -0.02 1.02 16 38 H 0.09 1.08 7.94 -2.39 -0.02 1.06 16 39 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 1.19 7.95 -2.39 -0.02 1.18 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.11 0.72 7.22 -2.39 -0.02 0.70 16 44 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -72.09 362.96 2.55 -69.55 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.18 Total: 16.12 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 5.15 Total: -30.33 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -4.82 Total: -102.61 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.09 2.55 -69.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897232197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.400 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds