Wall clock time and date at job start Mon Mar 30 2020 02:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46981 * 2 1 4 4 C 1.35396 * 126.51914 * 264.97471 * 3 2 1 5 5 N 1.30822 * 108.78849 * 179.97438 * 4 3 2 6 6 C 1.33364 * 109.14124 * 359.97438 * 5 4 3 7 7 C 1.35346 * 107.91423 * 0.04400 * 6 5 4 8 8 C 1.50699 * 123.43036 * 179.79755 * 7 6 5 9 9 C 1.53554 * 107.88284 * 344.35167 * 8 7 6 10 10 N 1.46945 * 109.58130 * 48.88018 * 9 8 7 11 11 C 1.46905 * 110.99863 * 164.39570 * 10 9 8 12 12 C 1.53003 * 109.47081 * 169.99520 * 11 10 9 13 13 H 1.09002 * 109.47570 * 305.00649 * 12 11 10 14 14 C 1.53002 * 109.46933 * 64.99890 * 12 11 10 15 15 C 1.53000 * 109.47118 * 185.00051 * 12 11 10 16 16 C 1.50697 * 109.47077 * 175.00302 * 15 12 11 17 17 H 1.08010 * 120.00167 * 359.97438 * 16 15 12 18 18 C 1.37874 * 120.00279 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99866 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00444 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47000 * 59.99806 * 20 18 16 22 22 H 1.48499 * 109.47397 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47029 * 300.00206 * 20 18 16 24 24 C 1.47281 * 111.50753 * 288.71759 * 10 9 8 25 25 H 1.08998 * 109.46911 * 60.00762 * 1 2 3 26 26 H 1.08999 * 109.46383 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47608 * 300.00215 * 1 2 3 28 28 H 1.08992 * 109.47608 * 239.99785 * 2 1 3 29 29 H 1.08998 * 109.46911 * 119.99238 * 2 1 3 30 30 H 1.08007 * 125.60162 * 359.96045 * 4 3 2 31 31 H 1.09002 * 109.78856 * 224.73748 * 8 7 6 32 32 H 1.08996 * 109.78680 * 103.96287 * 8 7 6 33 33 H 1.09002 * 109.44758 * 168.91323 * 9 8 7 34 34 H 1.08998 * 109.45310 * 288.83989 * 9 8 7 35 35 H 1.08994 * 109.47113 * 289.99436 * 11 10 9 36 36 H 1.09002 * 109.46824 * 49.99967 * 11 10 9 37 37 H 1.09005 * 109.46956 * 179.97438 * 14 12 11 38 38 H 1.08993 * 109.47166 * 300.00200 * 14 12 11 39 39 H 1.09003 * 109.46685 * 60.00474 * 14 12 11 40 40 H 1.09002 * 109.46865 * 294.99693 * 15 12 11 41 41 H 1.08998 * 109.47088 * 55.00358 * 15 12 11 42 42 H 0.96997 * 120.00412 * 180.02562 * 19 18 16 43 43 H 1.09008 * 109.69464 * 171.10699 * 24 10 9 44 44 H 1.08998 * 109.70024 * 291.65671 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3768 2.1091 -1.0839 5 7 2.7587 3.2958 -0.6871 6 6 2.6586 3.3660 0.6409 7 6 2.1968 2.1745 1.0872 8 6 1.9573 1.8697 2.5434 9 6 2.6803 2.9397 3.3743 10 7 2.3446 4.2739 2.8582 11 6 2.7036 5.3186 3.8267 12 6 2.5752 6.6926 3.1659 13 1 3.1771 6.7166 2.2575 14 6 1.1094 6.9538 2.8134 15 6 3.0674 7.7715 4.1327 16 6 3.0564 9.1097 3.4398 17 1 2.7313 9.1832 2.4124 18 6 3.4623 10.2400 4.1169 19 7 3.8587 10.1504 5.3677 20 14 3.4494 11.8987 3.2579 21 1 2.0667 12.2192 2.8213 22 1 3.9270 12.9459 4.1962 23 1 4.3436 11.8496 2.0733 24 6 2.9797 4.5235 1.5530 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 2.3517 1.7663 -2.1078 31 1 2.3554 0.8840 2.7844 32 1 0.8885 1.8978 2.7554 33 1 2.3669 2.8637 4.4155 34 1 3.7571 2.7849 3.3075 35 1 2.0338 5.2641 4.6848 36 1 3.7314 5.1693 4.1578 37 1 1.0178 7.9329 2.3430 38 1 0.7588 6.1852 2.1247 39 1 0.5074 6.9299 3.7218 40 1 2.4109 7.8071 5.0021 41 1 4.0824 7.5365 4.4531 42 1 4.1440 10.9456 5.8442 43 1 2.5898 5.4473 1.1254 44 1 4.0593 4.6042 1.6791 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897334292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:09 Heat of formation + Delta-G solvation = 51.763776 kcal Electronic energy + Delta-G solvation = -21849.975389 eV Core-core repulsion = 18802.727538 eV Total energy + Delta-G solvation = -3047.247850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.30050 -38.23807 -35.28227 -34.87308 -32.50147 -31.19958 -30.22272 -29.23704 -26.81265 -26.03630 -24.32386 -23.81393 -22.95467 -21.60297 -20.66430 -19.15349 -18.47596 -17.13494 -16.27327 -15.83803 -15.33892 -14.93182 -14.67917 -14.58416 -14.30835 -13.93921 -13.67284 -13.40259 -12.93643 -12.87629 -12.61483 -12.24259 -12.16189 -12.03260 -11.70706 -11.45764 -11.36821 -11.26048 -11.06937 -10.78280 -10.70302 -10.23502 -10.16255 -9.78666 -9.62383 -9.48181 -9.08827 -8.88097 -8.26339 -8.11247 -7.87585 -5.91675 -3.92344 2.01673 2.64292 3.19321 3.39942 3.43564 3.46974 4.06659 4.25716 4.48899 4.53862 4.57268 4.63987 4.76136 4.92505 5.13888 5.18014 5.23231 5.37092 5.38855 5.44324 5.62616 5.68355 5.73685 5.81664 5.84804 5.90068 6.05397 6.14412 6.21758 6.37107 6.50248 6.60469 6.72698 6.80544 7.08217 7.14722 7.23097 7.26517 7.41689 7.49878 7.75571 7.91475 8.08745 8.17124 8.53200 9.13820 9.70817 11.19897 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033526 B = 0.003488 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.965525 B = 8025.957070 C = 8443.371656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.450 5.450 4 C 0.164 3.836 5 N -0.479 5.479 6 C 0.010 3.990 7 C -0.022 4.022 8 C -0.031 4.031 9 C 0.059 3.941 10 N -0.535 5.535 11 C 0.064 3.936 12 C -0.091 4.091 13 H 0.060 0.940 14 C -0.124 4.124 15 C 0.029 3.971 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.277 1.277 24 C 0.139 3.861 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.202 0.798 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.259 0.741 43 H 0.101 0.899 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 -23.718 -8.308 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.134 5.134 4 C -0.116 4.116 5 N -0.197 5.197 6 C -0.121 4.121 7 C -0.137 4.137 8 C -0.070 4.070 9 C -0.070 4.070 10 N -0.260 5.260 11 C -0.063 4.063 12 C -0.109 4.109 13 H 0.079 0.921 14 C -0.182 4.182 15 C -0.009 4.009 16 C -0.550 4.550 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C 0.010 3.990 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.219 0.781 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.069 0.931 43 H 0.119 0.881 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.498 -23.110 -8.746 25.314 hybrid contribution 0.595 0.169 0.066 0.622 sum -4.903 -22.942 -8.681 25.014 Atomic orbital electron populations 1.22148 0.94041 1.02978 1.03541 1.21797 0.95740 0.80193 1.04313 1.45049 1.48953 1.12270 1.07085 1.24953 1.05036 0.88322 0.93312 1.69847 1.20018 1.18174 1.11650 1.20556 1.05968 0.95068 0.90473 1.20892 1.09521 0.92870 0.90461 1.20130 1.01608 0.98273 0.87012 1.22054 0.97563 0.89083 0.98270 1.61992 1.59283 1.01684 1.03069 1.22332 0.98461 0.91222 0.94310 1.21379 0.97122 0.92762 0.99684 0.92138 1.21618 0.95826 1.00483 1.00238 1.19107 0.95920 0.91907 0.93940 1.21214 1.43020 0.92352 0.98410 0.92591 1.25006 0.95574 0.99050 0.94878 1.69954 1.44903 1.29163 1.09787 0.86701 0.78415 0.83797 0.79354 1.20275 1.21435 1.20285 1.20403 0.96648 0.94967 0.86932 0.91751 0.90662 0.91618 0.88925 0.89391 0.78149 0.91240 0.90074 0.89962 0.94574 0.90839 0.95097 0.92677 0.94019 0.93992 0.96539 0.96909 0.93103 0.88102 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.24 37.16 0.38 -0.57 16 2 C 0.10 0.62 6.75 -4.04 -0.03 0.59 16 3 N -0.45 -4.80 2.74 -113.92 -0.31 -5.11 16 4 C 0.16 1.96 12.57 -89.78 -1.13 0.83 16 5 N -0.48 -7.73 11.24 -10.69 -0.12 -7.85 16 6 C 0.01 0.16 7.09 -82.89 -0.59 -0.43 16 7 C -0.02 -0.29 6.80 -81.88 -0.56 -0.85 16 8 C -0.03 -0.34 6.35 -27.60 -0.18 -0.52 16 9 C 0.06 0.75 5.50 -3.51 -0.02 0.73 16 10 N -0.54 -8.43 4.24 -235.26 -1.00 -9.42 16 11 C 0.06 1.12 4.60 -3.82 -0.02 1.10 16 12 C -0.09 -1.90 1.82 -90.62 -0.17 -2.06 16 13 H 0.06 1.30 6.10 -51.93 -0.32 0.98 16 14 C -0.12 -2.50 8.67 37.16 0.32 -2.18 16 15 C 0.03 0.75 4.45 -27.88 -0.12 0.62 16 16 C -0.51 -14.57 8.41 -34.44 -0.29 -14.86 16 17 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 20 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.14 2.34 4.65 -4.70 -0.02 2.32 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.37 8.13 -51.93 -0.42 -0.06 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.20 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 34 H 0.04 0.47 8.07 -51.93 -0.42 0.05 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 38 H 0.04 0.77 7.14 -51.93 -0.37 0.40 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.10 1.86 5.79 -51.92 -0.30 1.56 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -33.35 346.95 -10.60 -43.94 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.60 Total: -3.54 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.51 Total: -13.75 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.69 Total: -48.99 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.35 -10.60 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897334292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.707 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds