Wall clock time and date at job start Mon Mar 30 2020 01:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47289 * 2 1 4 4 C 1.53001 * 109.47388 * 239.99862 * 2 1 3 5 5 C 1.50693 * 109.47227 * 60.00128 * 4 2 1 6 6 H 1.08006 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00275 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99622 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00257 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47379 * 89.99416 * 9 7 5 11 11 H 1.48493 * 109.47193 * 209.99887 * 9 7 5 12 12 H 1.48503 * 109.47084 * 329.99588 * 9 7 5 13 13 C 1.53000 * 109.47043 * 119.99690 * 2 1 3 14 14 N 1.46499 * 109.47478 * 300.00204 * 13 2 1 15 15 C 1.40793 * 120.00596 * 179.97438 * 14 13 2 16 16 C 1.40223 * 126.06580 * 0.02562 * 15 14 13 17 17 N 1.30859 * 108.36578 * 179.97438 * 16 15 14 18 18 N 1.40078 * 108.36266 * 0.02562 * 17 16 15 19 19 C 1.46493 * 126.07576 * 180.26336 * 18 17 16 20 20 C 1.53779 * 113.61642 * 193.82510 * 19 18 17 21 21 C 1.53950 * 87.02163 * 220.04563 * 20 19 18 22 22 C 1.53782 * 113.61500 * 96.21716 * 19 18 17 23 23 C 1.35701 * 126.07076 * 179.97438 * 15 14 13 24 24 H 1.08992 * 109.47409 * 300.00470 * 1 2 3 25 25 H 1.09005 * 109.46691 * 60.00271 * 1 2 3 26 26 H 1.09005 * 109.47158 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47390 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47297 * 299.99994 * 3 2 1 29 29 H 1.09002 * 109.47332 * 59.99363 * 3 2 1 30 30 H 1.08999 * 109.46849 * 180.02562 * 4 2 1 31 31 H 1.09005 * 109.46578 * 299.99881 * 4 2 1 32 32 H 0.97001 * 119.99844 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47320 * 179.97438 * 13 2 1 34 34 H 1.09005 * 109.46750 * 60.00232 * 13 2 1 35 35 H 0.97005 * 119.99359 * 359.97438 * 14 13 2 36 36 H 1.07998 * 125.81945 * 0.02562 * 16 15 14 37 37 H 1.09007 * 112.84696 * 325.02178 * 19 18 17 38 38 H 1.09002 * 113.61697 * 334.56882 * 20 19 18 39 39 H 1.09004 * 113.61259 * 105.46649 * 20 19 18 40 40 H 1.09005 * 113.53697 * 270.81605 * 21 20 19 41 41 H 1.08998 * 113.74338 * 139.94336 * 21 20 19 42 42 H 1.09003 * 113.61067 * 254.53136 * 22 19 18 43 43 H 1.08996 * 113.61578 * 25.43572 * 22 19 18 44 44 H 1.08002 * 126.22464 * 0.03813 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3807 7 6 1.8705 -0.4823 -3.7320 8 7 2.6266 -1.5516 -3.8525 9 14 1.2485 0.3986 -5.2572 10 1 2.2273 1.4396 -5.6614 11 1 1.0828 -0.5804 -6.3613 12 1 -0.0592 1.0371 -4.9614 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4455 15 6 1.8912 -0.5118 3.7243 16 6 2.6850 -1.6344 3.9999 17 7 2.7774 -1.7652 5.2986 18 7 2.0464 -0.7323 5.8993 19 6 1.8939 -0.5075 7.3388 20 6 0.7756 0.4872 7.6920 21 6 1.7225 1.0453 8.7699 22 6 2.8845 0.5206 7.9102 23 6 1.5094 0.0289 4.9088 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7216 -1.2489 31 1 1.6767 -1.7490 -1.2491 32 1 2.8610 -1.8830 -4.7335 33 1 3.1300 -0.7216 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 0.9942 0.7583 2.3563 36 1 3.1428 -2.2805 3.2655 37 1 1.8495 -1.4351 7.9097 38 1 0.5548 1.1971 6.8948 39 1 -0.1183 0.0133 8.0976 40 1 1.6302 0.5428 9.7328 41 1 1.6984 2.1317 8.8554 42 1 3.6908 0.0735 8.4918 43 1 3.2414 1.2396 7.1728 44 1 0.8907 0.9043 5.0409 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897876737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:41 Heat of formation + Delta-G solvation = 70.168334 kcal Electronic energy + Delta-G solvation = -21278.581860 eV Core-core repulsion = 18232.132092 eV Total energy + Delta-G solvation = -3046.449769 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.07513 -39.49977 -38.88672 -35.44066 -34.03923 -32.09662 -30.10720 -28.77583 -27.90169 -26.95412 -26.57914 -25.82731 -24.52230 -22.41738 -21.33857 -20.20118 -19.42609 -18.49821 -18.31710 -16.75801 -16.61987 -16.39557 -15.88712 -15.57572 -15.43065 -15.22951 -14.63742 -14.38834 -14.05728 -13.89797 -13.78231 -13.61195 -13.25749 -13.05268 -12.86724 -12.69087 -12.58391 -12.28846 -12.24165 -12.18761 -11.91771 -11.70702 -11.62335 -11.46773 -11.34044 -10.91700 -10.78727 -10.78076 -10.48777 -10.15074 -8.12248 -7.87080 -6.19150 0.99493 1.42879 1.43123 1.53508 1.67294 2.09185 2.45000 2.85574 3.22136 3.41490 3.58199 3.84965 3.87896 4.00105 4.13615 4.14250 4.20303 4.32781 4.60400 4.62474 4.72086 4.79514 4.83772 4.85788 4.86020 4.89085 4.99796 5.06056 5.06397 5.07956 5.17455 5.20346 5.38673 5.47230 5.53848 5.53952 5.57867 5.62755 5.87196 5.93407 6.26610 6.34072 6.59165 6.81713 6.96015 7.22098 7.48154 9.00196 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.045976 B = 0.002914 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.869108 B = 9605.024500 C = 9897.017752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.117 4.117 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.069 0.931 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.261 1.261 13 C 0.162 3.838 14 N -0.733 5.733 15 C 0.053 3.947 16 C -0.011 4.011 17 N -0.310 5.310 18 N -0.359 5.359 19 C 0.126 3.874 20 C -0.137 4.137 21 C -0.123 4.123 22 C -0.150 4.150 23 C -0.028 4.028 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.064 0.936 30 H -0.013 1.013 31 H -0.013 1.013 32 H 0.259 0.741 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.402 0.598 36 H 0.175 0.825 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 7.180 24.702 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.063 4.063 3 C -0.174 4.174 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.087 0.913 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.186 1.186 13 C 0.036 3.964 14 N -0.372 5.372 15 C -0.055 4.055 16 C -0.197 4.197 17 N -0.133 5.133 18 N -0.147 5.147 19 C 0.025 3.975 20 C -0.175 4.175 21 C -0.161 4.161 22 C -0.189 4.189 23 C -0.176 4.176 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.005 0.995 31 H 0.006 0.994 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.239 0.761 36 H 0.192 0.808 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.887 6.260 25.548 26.589 hybrid contribution -0.244 0.407 -2.192 2.243 sum -4.131 6.667 23.355 24.637 Atomic orbital electron populations 1.21631 0.94172 1.00627 1.00991 1.20637 0.96244 0.96081 0.93338 1.21633 0.99672 0.95119 1.01008 1.18974 0.94268 0.94195 0.92293 1.21607 1.30275 1.11919 0.91292 0.91333 1.25920 0.95762 0.95885 1.02598 1.70112 1.38863 1.24924 1.24021 0.85577 0.79125 0.78177 0.78966 1.20180 1.21464 1.18555 1.20971 0.96732 0.94715 0.83940 1.43766 1.60113 1.33691 0.99665 1.17962 1.03231 0.97479 0.86822 1.23654 1.02969 0.99684 0.93435 1.77082 1.17473 1.10807 1.07983 1.48544 1.39297 1.20688 1.06190 1.23291 0.99850 0.99605 0.74781 1.23433 0.97141 0.97279 0.99697 1.22715 0.93576 1.02369 0.97440 1.23442 0.98093 0.97810 0.99540 1.21892 1.07400 1.02149 0.86176 0.91665 0.93235 0.94586 0.94600 0.93190 0.91679 0.99460 0.99440 0.93200 0.94575 0.94559 0.76119 0.80760 0.86279 0.88634 0.88967 0.88022 0.89252 0.90418 0.90526 0.78827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 2 C -0.06 -2.40 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -27.82 7.65 25.60 0.20 -27.62 16 6 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 7 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 8 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 9 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 13 C 0.16 5.59 4.52 86.38 0.39 5.98 16 14 N -0.73 -20.87 5.20 -339.93 -1.77 -22.64 16 15 C 0.05 1.51 6.96 37.59 0.26 1.77 16 16 C -0.01 -0.33 11.34 85.32 0.97 0.64 16 17 N -0.31 -9.44 12.57 -56.78 -0.71 -10.15 16 18 N -0.36 -8.64 3.84 -323.85 -1.24 -9.88 16 19 C 0.13 2.03 5.03 45.52 0.23 2.26 16 20 C -0.14 -1.37 7.46 31.18 0.23 -1.13 16 21 C -0.12 -0.94 8.09 31.18 0.25 -0.69 16 22 C -0.15 -1.99 7.88 31.12 0.25 -1.75 16 23 C -0.03 -0.66 10.75 83.46 0.90 0.24 16 24 H 0.06 1.83 6.86 -2.39 -0.02 1.82 16 25 H 0.05 1.87 6.62 -2.38 -0.02 1.85 16 26 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.88 6.62 -2.38 -0.02 1.87 16 29 H 0.06 1.83 6.86 -2.39 -0.02 1.81 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 32 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.40 10.06 6.29 -92.70 -0.58 9.47 16 36 H 0.18 5.21 7.90 -2.91 -0.02 5.18 16 37 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.10 0.93 6.33 -2.39 -0.02 0.91 16 39 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.19 3.14 6.72 -2.91 -0.02 3.12 16 Total: -1.00 -67.01 347.46 4.37 -62.64 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.40 Total: 18.30 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 5.38 Total: -27.44 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -3.44 Total: -99.54 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -67.01 4.37 -62.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897876737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.812 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds