Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46834 * 111.00565 * 2 1 4 4 C 1.53179 * 109.46275 * 187.69166 * 3 2 1 5 5 C 1.52912 * 108.99327 * 302.93483 * 4 3 2 6 6 C 1.53189 * 113.47113 * 283.64529 * 5 4 3 7 7 C 1.53567 * 83.46681 * 270.78949 * 6 5 4 8 8 N 1.47095 * 113.54570 * 184.77444 * 5 4 3 9 9 C 1.46903 * 110.99825 * 336.51354 * 8 5 4 10 10 C 1.52999 * 109.47368 * 187.39177 * 9 8 5 11 11 H 1.09001 * 109.46617 * 55.00168 * 10 9 8 12 12 C 1.47200 * 109.46851 * 295.00226 * 10 9 8 13 13 N 7.73719 * 160.70853 * 25.84059 * 2 1 3 14 14 C 1.53002 * 109.47329 * 174.99975 * 10 9 8 15 15 C 1.50696 * 109.46919 * 185.00033 * 14 10 9 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 10 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 C 1.52908 * 112.43865 * 54.11901 * 5 4 3 24 24 C 1.46827 * 110.99934 * 124.52204 * 2 1 3 25 25 H 1.09004 * 109.46708 * 59.99652 * 1 2 3 26 26 H 1.08993 * 109.47384 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46894 * 300.00254 * 1 2 3 28 28 H 1.09004 * 109.46681 * 67.69479 * 3 2 1 29 29 H 1.08996 * 109.47285 * 307.69519 * 3 2 1 30 30 H 1.09004 * 109.55604 * 183.07390 * 4 3 2 31 31 H 1.09004 * 109.55032 * 62.78187 * 4 3 2 32 32 H 1.08997 * 114.18102 * 157.16977 * 6 5 4 33 33 H 1.08993 * 114.36464 * 24.42186 * 6 5 4 34 34 H 1.09008 * 113.46331 * 219.48615 * 7 6 5 35 35 H 1.09005 * 113.46784 * 89.06141 * 7 6 5 36 36 H 1.09008 * 109.46872 * 67.39259 * 9 8 5 37 37 H 1.09005 * 109.47368 * 307.39601 * 9 8 5 38 38 H 1.09000 * 109.46497 * 65.00298 * 14 10 9 39 39 H 1.08999 * 109.46623 * 305.00362 * 14 10 9 40 40 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 41 41 H 1.08999 * 109.54855 * 65.73529 * 23 5 4 42 42 H 1.08996 * 109.55200 * 186.03227 * 23 5 4 43 43 H 1.09002 * 109.47440 * 292.30738 * 24 2 1 44 44 H 1.09007 * 109.46840 * 52.30622 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5144 1.3342 -0.1933 5 6 4.1362 0.4791 0.9114 6 6 4.2099 1.1913 2.2657 7 6 5.5734 1.6672 1.7436 8 7 5.6069 0.4664 0.8871 9 6 6.1141 0.7896 -0.4532 10 6 7.6303 0.5876 -0.4872 11 1 7.8690 -0.4260 -0.1650 12 6 8.2745 1.5544 0.4166 13 7 8.7717 2.3006 1.1142 14 6 8.1417 0.8032 -1.9130 15 6 9.6134 0.4848 -1.9723 16 1 10.1323 0.1615 -1.0820 17 6 10.2979 0.6074 -3.1630 18 7 9.6674 1.0073 -4.2456 19 14 12.1224 0.2135 -3.2362 20 1 12.3058 -1.2230 -3.5652 21 1 12.7671 1.0471 -4.2824 22 1 12.7447 0.5031 -1.9194 23 6 3.5143 -0.9156 0.9898 24 6 1.9951 -0.7768 1.1294 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7614 1.8497 0.9508 29 1 1.5390 1.9352 -0.8131 30 1 3.9136 2.3470 -0.1390 31 1 3.7481 0.9001 -1.1655 32 1 4.2693 0.5186 3.1213 33 1 3.4780 1.9886 2.3948 34 1 6.3511 1.6774 2.5074 35 1 5.5216 2.5999 1.1817 36 1 5.8805 1.8279 -0.6893 37 1 5.6437 0.1354 -1.1873 38 1 7.9826 1.8419 -2.2028 39 1 7.6004 0.1484 -2.5960 40 1 8.7200 1.2122 -4.2075 41 1 3.7480 -1.4707 0.0813 42 1 3.9133 -1.4448 1.8551 43 1 1.7612 -0.2650 2.0629 44 1 1.5387 -1.7667 1.1335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899911059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = 32.903298 kcal Electronic energy + Delta-G solvation = -22173.422871 eV Core-core repulsion = 19125.357169 eV Total energy + Delta-G solvation = -3048.065702 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.33562 -38.84801 -37.89951 -35.96824 -34.22443 -32.43907 -31.94683 -30.44610 -27.42641 -26.81429 -24.81686 -24.26579 -23.94013 -23.36483 -21.90907 -19.23926 -18.76802 -18.29852 -17.32442 -16.67802 -16.39433 -16.05446 -15.89034 -15.68535 -15.47190 -15.08897 -14.88445 -14.28242 -14.19954 -14.02047 -13.77647 -13.50680 -13.40884 -13.30371 -13.00496 -12.79338 -12.67652 -12.46981 -12.37496 -12.33776 -12.08290 -12.00900 -11.97274 -11.93221 -11.68999 -11.33360 -10.92857 -10.66590 -10.53669 -9.82245 -9.21180 -8.65795 -6.36706 1.52092 1.60030 1.77229 1.86856 1.91128 2.54591 2.84808 3.04366 3.11720 3.20350 3.40495 3.62186 3.88601 3.97294 4.06544 4.10914 4.16918 4.27377 4.32045 4.40542 4.51138 4.54927 4.57195 4.63434 4.69528 4.71888 4.73039 4.80862 4.87714 4.91728 4.94021 5.06434 5.07158 5.10662 5.17270 5.23817 5.30948 5.36623 5.52117 5.91625 6.04804 6.16457 6.18617 6.21263 6.60400 6.69858 7.40991 8.76224 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.003963 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.699120 B = 7064.233345 C = 7623.116740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.561 5.561 3 C 0.067 3.933 4 C -0.121 4.121 5 C 0.063 3.937 6 C -0.122 4.122 7 C -0.007 4.007 8 N -0.473 5.473 9 C 0.042 3.958 10 C 0.030 3.970 11 H 0.113 0.887 12 C 0.255 3.745 13 N -0.501 5.501 14 C 0.024 3.976 15 C -0.616 4.616 16 H 0.043 0.957 17 C -0.029 4.029 18 N -0.934 5.934 19 Si 1.109 2.891 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.088 4.088 24 C 0.064 3.936 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.100 0.900 38 H -0.004 1.004 39 H 0.030 0.970 40 H 0.261 0.739 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.040 0.960 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.997 -2.933 10.778 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.286 5.286 3 C -0.061 4.061 4 C -0.160 4.160 5 C -0.028 4.028 6 C -0.159 4.159 7 C -0.136 4.136 8 N -0.194 5.194 9 C -0.088 4.088 10 C 0.008 3.992 11 H 0.131 0.869 12 C -0.061 4.061 13 N -0.178 5.178 14 C -0.015 4.015 15 C -0.654 4.654 16 H 0.062 0.938 17 C -0.228 4.228 18 N -0.571 5.571 19 Si 0.931 3.069 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.126 4.126 24 C -0.064 4.064 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.015 0.985 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.388 -2.695 10.578 21.384 hybrid contribution -1.666 1.134 0.832 2.181 sum -20.054 -1.561 11.410 23.126 Atomic orbital electron populations 1.22368 0.86057 1.02697 1.00987 1.61795 1.08654 1.13734 1.44401 1.21974 0.93848 0.89359 1.00945 1.21866 0.95960 0.99370 0.98763 1.22523 0.87990 0.96819 0.95436 1.23193 0.95536 1.00280 0.96914 1.23795 0.99075 0.93082 0.97641 1.68919 1.10660 1.30783 1.09038 1.22596 0.91972 1.00886 0.93347 1.18969 0.93393 0.94980 0.91896 0.86909 1.29450 0.91660 0.93120 0.91881 1.80990 1.11020 1.12342 1.13484 1.19135 0.95836 0.95871 0.90647 1.22375 0.95842 1.49572 0.97634 0.93848 1.27086 1.09938 0.93624 0.92124 1.70878 1.11902 1.43684 1.30653 0.83016 0.70356 0.77694 0.75800 1.19050 1.20886 1.20797 1.21384 0.94137 0.94493 1.02615 1.22064 0.94475 0.98561 0.91348 0.91052 0.90663 0.95233 0.94130 0.90068 0.91399 0.91006 0.88238 0.89472 0.91771 0.92019 0.93204 0.88174 0.98542 0.95179 0.92913 0.92070 0.90347 0.94189 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.58 127.69 1.22 1.56 16 2 N -0.56 -9.42 4.87 -922.06 -4.49 -13.91 16 3 C 0.07 1.11 5.40 86.38 0.47 1.58 16 4 C -0.12 -2.42 3.86 30.62 0.12 -2.30 16 5 C 0.06 1.31 0.74 0.32 0.00 1.31 16 6 C -0.12 -2.32 7.26 30.85 0.22 -2.10 16 7 C -0.01 -0.18 5.98 83.20 0.50 0.32 16 8 N -0.47 -12.70 6.04 -882.82 -5.33 -18.03 16 9 C 0.04 1.26 3.36 86.30 0.29 1.55 16 10 C 0.03 1.14 2.42 -12.60 -0.03 1.11 16 11 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16 12 C 0.26 10.84 12.37 89.44 1.11 11.94 16 13 N -0.50 -22.62 18.54 20.01 0.37 -22.25 16 14 C 0.02 1.14 3.74 29.85 0.11 1.25 16 15 C -0.62 -33.99 8.60 25.60 0.22 -33.77 16 16 H 0.04 2.41 7.59 -2.91 -0.02 2.39 16 17 C -0.03 -1.64 5.46 84.66 0.46 -1.17 16 18 N -0.93 -55.98 13.65 21.45 0.29 -55.68 16 19 Si 1.11 50.75 29.90 68.60 2.05 52.80 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.09 -1.67 5.57 30.63 0.17 -1.50 16 24 C 0.06 0.99 5.40 86.38 0.47 1.46 16 25 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.07 0.83 8.07 -2.39 -0.02 0.81 16 27 H 0.03 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.04 0.62 7.55 -2.39 -0.02 0.60 16 29 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 30 H 0.07 1.39 6.54 -2.39 -0.02 1.37 16 31 H 0.07 1.63 6.97 -2.38 -0.02 1.62 16 32 H 0.10 1.77 8.07 -2.39 -0.02 1.75 16 33 H 0.09 1.40 7.55 -2.39 -0.02 1.38 16 34 H 0.06 1.88 8.10 -2.38 -0.02 1.86 16 35 H 0.06 1.65 6.65 -2.38 -0.02 1.64 16 36 H 0.05 1.51 6.27 -2.38 -0.01 1.50 16 37 H 0.10 2.87 7.34 -2.38 -0.02 2.85 16 38 H 0.00 -0.19 8.00 -2.39 -0.02 -0.21 16 39 H 0.03 1.43 8.01 -2.39 -0.02 1.41 16 40 H 0.26 15.51 7.22 -92.71 -0.67 14.84 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 43 H 0.04 0.57 8.03 -2.39 -0.02 0.55 16 44 H 0.09 1.16 8.05 -2.38 -0.02 1.14 16 Total: -1.00 -64.73 342.83 -0.72 -65.45 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.06 Total: 10.41 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 5.33 Total: -18.78 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -9.16 Total: -109.88 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.80 kcal Total: -64.73 -0.72 -65.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899911059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.349 kcal (2) G-P(sol) polarization free energy of solvation -64.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds