Wall clock time and date at job start Mon Mar 30 2020 01:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46853 * 2 1 4 4 C 1.50700 * 109.46721 * 240.00408 * 2 1 3 5 5 H 1.08003 * 119.99434 * 241.35587 * 4 2 1 6 6 C 1.37871 * 120.00572 * 61.35894 * 4 2 1 7 7 N 1.31514 * 120.00324 * 193.95644 * 6 4 2 8 8 Si 1.86805 * 119.99760 * 13.96086 * 6 4 2 9 9 H 1.48498 * 109.47468 * 84.55638 * 8 6 4 10 10 H 1.48504 * 109.46956 * 204.55674 * 8 6 4 11 11 H 1.48502 * 109.46913 * 324.55541 * 8 6 4 12 12 C 1.52997 * 109.47314 * 120.00264 * 2 1 3 13 13 N 1.46897 * 109.47089 * 300.00033 * 12 2 1 14 14 C 1.46900 * 111.00271 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47462 * 180.02562 * 14 13 12 16 16 C 1.39876 * 126.03551 * 269.69476 * 15 14 13 17 17 N 1.30840 * 108.19908 * 179.81730 * 16 15 14 18 18 N 1.40083 * 108.20625 * 0.43519 * 17 16 15 19 19 C 1.46499 * 126.04239 * 179.74400 * 18 17 16 20 20 C 1.53778 * 113.61763 * 194.11505 * 19 18 17 21 21 C 1.53961 * 87.01798 * 220.04639 * 20 19 18 22 22 C 1.53774 * 113.61755 * 96.50229 * 19 18 17 23 23 C 1.34949 * 107.92634 * 359.72049 * 18 17 16 24 24 H 1.08998 * 109.47251 * 309.31265 * 1 2 3 25 25 H 1.08993 * 109.47430 * 69.31580 * 1 2 3 26 26 H 1.09003 * 109.47039 * 189.31627 * 1 2 3 27 27 H 1.08995 * 109.47304 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47100 * 300.00292 * 3 2 1 29 29 H 1.09001 * 109.47427 * 60.00018 * 3 2 1 30 30 H 0.96999 * 119.99875 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47156 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.47153 * 60.00145 * 12 2 1 33 33 H 1.00908 * 110.99683 * 303.95674 * 13 12 2 34 34 H 1.09001 * 109.47031 * 300.00429 * 14 13 12 35 35 H 1.09001 * 109.46821 * 59.99780 * 14 13 12 36 36 H 1.07996 * 125.90348 * 359.97438 * 16 15 14 37 37 H 1.09002 * 112.84843 * 325.30540 * 19 18 17 38 38 H 1.09002 * 113.61157 * 334.55906 * 20 19 18 39 39 H 1.09000 * 113.61918 * 105.46725 * 20 19 18 40 40 H 1.09003 * 113.53224 * 270.80726 * 21 20 19 41 41 H 1.09003 * 113.74468 * 139.94682 * 21 20 19 42 42 H 1.09009 * 113.61719 * 254.53048 * 22 19 18 43 43 H 1.08996 * 113.61443 * 25.43225 * 22 19 18 44 44 H 1.08001 * 126.13230 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6349 -1.6011 -1.1316 6 6 1.7225 -0.2232 -2.4826 7 7 1.9162 -0.9722 -3.5461 8 14 1.0276 1.5009 -2.6683 9 1 2.1417 2.4820 -2.7081 10 1 0.2471 1.5868 -3.9287 11 1 0.1417 1.8043 -1.5157 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0289 2.4486 14 6 2.0219 -0.6946 3.6703 15 6 1.5003 0.0419 4.8771 16 6 2.1413 1.0938 5.5397 17 7 1.3804 1.4749 6.5335 18 7 0.2341 0.6697 6.5408 19 6 -0.8752 0.7579 7.4935 20 6 -1.8127 -0.4607 7.4622 21 6 -2.9780 0.5327 7.6223 22 6 -2.0630 1.5892 6.9809 23 6 0.3318 -0.2014 5.5147 24 1 -0.3633 0.6511 0.7951 25 1 -0.3634 0.3630 -0.9613 26 1 -0.3633 -1.0141 0.1664 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6979 -0.6295 -4.4269 31 1 3.1300 -0.7209 1.2494 32 1 1.6768 -1.7490 1.2491 33 1 1.8198 0.9435 2.4401 34 1 1.6589 -1.7223 3.6872 35 1 3.1118 -0.6940 3.6867 36 1 3.0978 1.5198 5.2751 37 1 -0.5504 1.0332 8.4970 38 1 -1.8146 -0.9856 6.5069 39 1 -1.6879 -1.1296 8.3137 40 1 -3.2289 0.7454 8.6615 41 1 -3.8510 0.2862 7.0180 42 1 -2.1401 2.5728 7.4444 43 1 -2.1335 1.6258 5.8938 44 1 -0.3928 -0.9570 5.2496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922176844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:03 Heat of formation + Delta-G solvation = 113.224590 kcal Electronic energy + Delta-G solvation = -21546.054179 eV Core-core repulsion = 18501.471470 eV Total energy + Delta-G solvation = -3044.582709 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37797 -38.77453 -37.18031 -34.21965 -31.82020 -31.35797 -30.02337 -26.53258 -26.17741 -26.07047 -25.07966 -24.64770 -22.88735 -21.46995 -20.35257 -19.43241 -18.70268 -17.33838 -16.08550 -15.98379 -15.59017 -14.96691 -14.85839 -14.47948 -14.03611 -13.68608 -13.30991 -13.22849 -12.89259 -12.72800 -12.55830 -12.45623 -12.07615 -12.01555 -11.85555 -11.70832 -11.66988 -11.06796 -10.95013 -10.81571 -10.45147 -10.25547 -10.00097 -9.96136 -9.76672 -9.36323 -8.92619 -8.52647 -8.38579 -8.30860 -7.72600 -6.04457 -3.99722 1.90540 2.44685 2.84792 3.34828 3.44322 3.47820 3.87768 4.07059 4.33504 4.36011 4.47588 4.72594 4.87222 5.01300 5.10609 5.20840 5.24567 5.29105 5.40826 5.43212 5.49114 5.51424 5.58312 5.79506 5.91348 5.96668 6.04378 6.19841 6.30034 6.33292 6.55221 6.65161 6.69867 6.82573 6.86757 6.98792 7.04281 7.11943 7.45740 7.59618 7.69010 7.74115 7.91679 8.02646 8.59614 9.00696 9.62145 11.09071 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.003556 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.981048 B = 7871.775635 C = 8197.950651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.041 3.959 3 C -0.149 4.149 4 C -0.511 4.511 5 H 0.071 0.929 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.884 3.116 9 H -0.288 1.288 10 H -0.308 1.308 11 H -0.246 1.246 12 C 0.084 3.916 13 N -0.687 5.687 14 C 0.135 3.865 15 C -0.226 4.226 16 C 0.051 3.949 17 N -0.304 5.304 18 N -0.366 5.366 19 C 0.138 3.862 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.148 4.148 23 C 0.072 3.928 24 H 0.031 0.969 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.262 0.738 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.336 0.664 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.178 0.822 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 2.646 22.999 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.039 3.961 3 C -0.206 4.206 4 C -0.549 4.549 5 H 0.089 0.911 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.717 3.283 9 H -0.216 1.216 10 H -0.237 1.237 11 H -0.172 1.172 12 C -0.044 4.044 13 N -0.319 5.319 14 C 0.005 3.995 15 C -0.237 4.237 16 C -0.136 4.136 17 N -0.124 5.124 18 N -0.148 5.148 19 C 0.036 3.964 20 C -0.185 4.185 21 C -0.176 4.176 22 C -0.187 4.187 23 C -0.075 4.075 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.155 0.845 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.195 0.805 37 H 0.136 0.864 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.678 3.105 23.883 25.279 hybrid contribution 0.806 0.673 -1.038 1.476 sum -6.872 3.778 22.845 24.154 Atomic orbital electron populations 1.22057 0.97532 0.99611 0.99109 1.18469 0.92847 0.91484 0.93255 1.22357 1.00323 0.99162 0.98727 1.20890 1.33477 1.12009 0.88569 0.91072 1.24975 0.94734 0.97309 0.95850 1.69967 1.48944 1.35990 0.98649 0.87311 0.79385 0.85631 0.75932 1.21643 1.23652 1.17176 1.21955 0.96017 0.97849 0.88620 1.60678 1.63815 1.06351 1.01054 1.20115 0.96167 0.96846 0.86418 1.20072 0.97325 1.03769 1.02567 1.23793 0.99674 0.96331 0.93759 1.77286 0.95165 1.16985 1.22965 1.48579 1.16202 1.26416 1.23624 1.22911 0.82171 0.98701 0.92638 1.23446 0.94712 0.96366 1.03926 1.22732 0.97060 0.96019 1.01746 1.23448 0.94253 0.98824 1.02179 1.22187 0.98848 0.96393 0.90029 0.94975 0.93899 0.94170 0.93562 0.94336 0.94711 0.92794 0.96139 0.91778 0.84544 0.91024 0.95095 0.80490 0.86424 0.88688 0.89997 0.89485 0.90095 0.90405 0.89051 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 7.55 37.16 0.28 -2.53 16 2 C 0.04 0.93 0.57 -155.66 -0.09 0.84 16 3 C -0.15 -3.21 7.36 37.15 0.27 -2.94 16 4 C -0.51 -14.17 8.62 -34.44 -0.30 -14.47 16 5 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 6 C 0.07 2.10 5.32 -17.82 -0.09 2.01 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 8 Si 0.88 22.19 22.79 -169.99 -3.87 18.31 16 9 H -0.29 -7.19 7.10 56.52 0.40 -6.79 16 10 H -0.31 -7.85 7.11 56.52 0.40 -7.44 16 11 H -0.25 -5.76 4.65 56.52 0.26 -5.50 16 12 C 0.08 1.65 4.57 -3.83 -0.02 1.63 16 13 N -0.69 -11.40 5.89 -115.06 -0.68 -12.08 16 14 C 0.13 1.88 6.17 -4.98 -0.03 1.85 16 15 C -0.23 -2.99 5.61 -105.05 -0.59 -3.58 16 16 C 0.05 0.67 11.96 -17.36 -0.21 0.46 16 17 N -0.30 -4.25 12.58 30.63 0.39 -3.87 16 18 N -0.37 -4.37 3.81 -54.08 -0.21 -4.58 16 19 C 0.14 1.18 5.02 -67.12 -0.34 0.85 16 20 C -0.15 -0.93 7.46 -25.83 -0.19 -1.12 16 21 C -0.14 -0.76 8.09 -25.83 -0.21 -0.97 16 22 C -0.15 -1.15 7.88 -25.93 -0.20 -1.35 16 23 C 0.07 0.86 10.60 -17.22 -0.18 0.68 16 24 H 0.03 0.65 7.88 -51.93 -0.41 0.25 16 25 H 0.04 1.01 4.30 -51.93 -0.22 0.79 16 26 H 0.04 0.88 8.12 -51.93 -0.42 0.45 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 29 H 0.03 0.65 6.57 -51.93 -0.34 0.31 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.34 5.57 6.76 -39.29 -0.27 5.30 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.18 1.94 8.06 -52.49 -0.42 1.51 16 37 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.63 6.32 -51.93 -0.33 0.30 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.17 1.68 6.69 -52.49 -0.35 1.33 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -31.71 337.47 -7.63 -39.34 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.22 Total: 3.25 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -1.90 Total: -18.64 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.28 Total: -47.35 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -3.87 Total: 18.31 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.71 -7.63 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922176844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.563 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds