Wall clock time and date at job start Mon Mar 30 2020 01:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46853 * 2 1 4 4 C 1.50700 * 109.46721 * 240.00408 * 2 1 3 5 5 H 1.08003 * 119.99434 * 241.35587 * 4 2 1 6 6 C 1.37871 * 120.00572 * 61.35894 * 4 2 1 7 7 N 1.31514 * 120.00324 * 193.95644 * 6 4 2 8 8 Si 1.86805 * 119.99760 * 13.96086 * 6 4 2 9 9 H 1.48498 * 109.47468 * 84.55638 * 8 6 4 10 10 H 1.48504 * 109.46956 * 204.55674 * 8 6 4 11 11 H 1.48502 * 109.46913 * 324.55541 * 8 6 4 12 12 C 1.52997 * 109.47314 * 120.00264 * 2 1 3 13 13 N 1.46897 * 109.47089 * 300.00033 * 12 2 1 14 14 C 1.46900 * 111.00271 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47462 * 180.02562 * 14 13 12 16 16 C 1.39876 * 126.03551 * 269.69476 * 15 14 13 17 17 N 1.30840 * 108.19908 * 179.81730 * 16 15 14 18 18 N 1.40083 * 108.20625 * 0.43519 * 17 16 15 19 19 C 1.46499 * 126.04239 * 179.74400 * 18 17 16 20 20 C 1.53778 * 113.61763 * 194.11505 * 19 18 17 21 21 C 1.53961 * 87.01798 * 220.04639 * 20 19 18 22 22 C 1.53774 * 113.61755 * 96.50229 * 19 18 17 23 23 C 1.34949 * 107.92634 * 359.72049 * 18 17 16 24 24 H 1.08998 * 109.47251 * 309.31265 * 1 2 3 25 25 H 1.08993 * 109.47430 * 69.31580 * 1 2 3 26 26 H 1.09003 * 109.47039 * 189.31627 * 1 2 3 27 27 H 1.08995 * 109.47304 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47100 * 300.00292 * 3 2 1 29 29 H 1.09001 * 109.47427 * 60.00018 * 3 2 1 30 30 H 0.96999 * 119.99875 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47156 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.47153 * 60.00145 * 12 2 1 33 33 H 1.00908 * 110.99683 * 303.95674 * 13 12 2 34 34 H 1.09001 * 109.47031 * 300.00429 * 14 13 12 35 35 H 1.09001 * 109.46821 * 59.99780 * 14 13 12 36 36 H 1.07996 * 125.90348 * 359.97438 * 16 15 14 37 37 H 1.09002 * 112.84843 * 325.30540 * 19 18 17 38 38 H 1.09002 * 113.61157 * 334.55906 * 20 19 18 39 39 H 1.09000 * 113.61918 * 105.46725 * 20 19 18 40 40 H 1.09003 * 113.53224 * 270.80726 * 21 20 19 41 41 H 1.09003 * 113.74468 * 139.94682 * 21 20 19 42 42 H 1.09009 * 113.61719 * 254.53048 * 22 19 18 43 43 H 1.08996 * 113.61443 * 25.43225 * 22 19 18 44 44 H 1.08001 * 126.13230 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6349 -1.6011 -1.1316 6 6 1.7225 -0.2232 -2.4826 7 7 1.9162 -0.9722 -3.5461 8 14 1.0276 1.5009 -2.6683 9 1 2.1417 2.4820 -2.7081 10 1 0.2471 1.5868 -3.9287 11 1 0.1417 1.8043 -1.5157 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0289 2.4486 14 6 2.0219 -0.6946 3.6703 15 6 1.5003 0.0419 4.8771 16 6 2.1413 1.0938 5.5397 17 7 1.3804 1.4749 6.5335 18 7 0.2341 0.6697 6.5408 19 6 -0.8752 0.7579 7.4935 20 6 -1.8127 -0.4607 7.4622 21 6 -2.9780 0.5327 7.6223 22 6 -2.0630 1.5892 6.9809 23 6 0.3318 -0.2014 5.5147 24 1 -0.3633 0.6511 0.7951 25 1 -0.3634 0.3630 -0.9613 26 1 -0.3633 -1.0141 0.1664 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6979 -0.6295 -4.4269 31 1 3.1300 -0.7209 1.2494 32 1 1.6768 -1.7490 1.2491 33 1 1.8198 0.9435 2.4401 34 1 1.6589 -1.7223 3.6872 35 1 3.1118 -0.6940 3.6867 36 1 3.0978 1.5198 5.2751 37 1 -0.5504 1.0332 8.4970 38 1 -1.8146 -0.9856 6.5069 39 1 -1.6879 -1.1296 8.3137 40 1 -3.2289 0.7454 8.6615 41 1 -3.8510 0.2862 7.0180 42 1 -2.1401 2.5728 7.4444 43 1 -2.1335 1.6258 5.8938 44 1 -0.3928 -0.9570 5.2496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922176844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:02 Heat of formation + Delta-G solvation = 92.412548 kcal Electronic energy + Delta-G solvation = -21546.956657 eV Core-core repulsion = 18501.471470 eV Total energy + Delta-G solvation = -3045.485187 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.26345 -39.42997 -38.80788 -35.71920 -33.71730 -32.37103 -31.19328 -27.94475 -27.54002 -27.01603 -26.67078 -25.79089 -24.23380 -22.27898 -21.27712 -20.54615 -20.09844 -18.26386 -17.96586 -17.33435 -16.67701 -16.35844 -15.84764 -15.40410 -15.32319 -15.00830 -14.76224 -14.50498 -14.33253 -13.93936 -13.78880 -13.69925 -13.49582 -13.34016 -13.04019 -12.93988 -12.45226 -12.25700 -12.24394 -11.91431 -11.82135 -11.58870 -11.56883 -11.53735 -11.32518 -10.91304 -10.53984 -10.30931 -10.27483 -9.38442 -9.04198 -8.27006 -6.25474 0.98651 1.36550 1.40338 1.50625 1.64648 1.85305 2.37669 3.10293 3.28335 3.52665 3.66442 3.78144 3.83065 3.91509 4.06307 4.27280 4.37950 4.47615 4.53522 4.57141 4.60291 4.69354 4.72507 4.83366 4.87533 4.89206 4.94588 4.95852 5.03733 5.05385 5.09413 5.16022 5.19790 5.29209 5.35488 5.39978 5.64920 5.74872 5.79800 5.90778 6.19646 6.30337 6.39563 6.66092 6.80342 6.82724 7.39914 8.90267 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.003556 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.981048 B = 7871.775635 C = 8197.950651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.035 3.965 3 C -0.147 4.147 4 C -0.512 4.512 5 H 0.031 0.969 6 C 0.016 3.984 7 N -0.949 5.949 8 Si 0.941 3.059 9 H -0.284 1.284 10 H -0.316 1.316 11 H -0.214 1.214 12 C 0.097 3.903 13 N -0.682 5.682 14 C 0.141 3.859 15 C -0.243 4.243 16 C 0.044 3.956 17 N -0.333 5.333 18 N -0.364 5.364 19 C 0.122 3.878 20 C -0.139 4.139 21 C -0.124 4.124 22 C -0.151 4.151 23 C 0.075 3.925 24 H 0.055 0.945 25 H 0.028 0.972 26 H 0.036 0.964 27 H 0.045 0.955 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.262 0.738 31 H 0.014 0.986 32 H 0.054 0.946 33 H 0.339 0.661 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.192 0.808 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 3.842 25.389 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.034 3.966 3 C -0.203 4.203 4 C -0.550 4.550 5 H 0.049 0.951 6 C -0.180 4.180 7 N -0.589 5.589 8 Si 0.772 3.228 9 H -0.212 1.212 10 H -0.246 1.246 11 H -0.139 1.139 12 C -0.032 4.032 13 N -0.314 5.314 14 C 0.011 3.989 15 C -0.254 4.254 16 C -0.141 4.141 17 N -0.154 5.154 18 N -0.145 5.145 19 C 0.021 3.979 20 C -0.178 4.178 21 C -0.162 4.162 22 C -0.189 4.189 23 C -0.072 4.072 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.209 0.791 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.169 4.315 26.327 28.210 hybrid contribution 1.287 0.205 -1.692 2.136 sum -7.882 4.520 24.635 26.258 Atomic orbital electron populations 1.21960 0.96696 0.99964 0.99090 1.18469 0.93391 0.92346 0.92381 1.22282 1.00469 0.97925 0.99672 1.21247 1.32096 1.10849 0.90805 0.95074 1.25787 0.95581 1.01147 0.95517 1.70111 1.51391 1.38120 0.99280 0.86384 0.79285 0.80727 0.76436 1.21167 1.24583 1.13853 1.21630 0.95457 0.97213 0.88872 1.60618 1.63698 1.06357 1.00760 1.20064 0.96477 0.96861 0.85480 1.20018 0.98141 1.04474 1.02797 1.24082 1.00238 0.96286 0.93518 1.77238 0.96258 1.18203 1.23728 1.48879 1.16171 1.25654 1.23840 1.23352 0.81588 1.00597 0.92394 1.23453 0.93933 0.95928 1.04455 1.22724 0.96580 0.94316 1.02608 1.23425 0.94692 0.99586 1.01222 1.22530 0.98762 0.96324 0.89597 0.92591 0.95282 0.94531 0.93555 0.95427 0.91450 0.92890 0.96793 0.92771 0.84247 0.90663 0.94642 0.79097 0.85844 0.88870 0.88585 0.87786 0.89496 0.90246 0.90785 0.79284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 7.55 71.98 0.54 -4.53 16 2 C 0.04 1.56 0.57 -52.93 -0.03 1.53 16 3 C -0.15 -5.93 7.36 71.98 0.53 -5.40 16 4 C -0.51 -28.77 8.62 25.60 0.22 -28.55 16 5 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 6 C 0.02 0.96 5.32 84.65 0.45 1.41 16 7 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 8 Si 0.94 45.41 22.79 68.60 1.56 46.97 16 9 H -0.28 -13.41 7.10 99.48 0.71 -12.70 16 10 H -0.32 -15.59 7.11 99.48 0.71 -14.88 16 11 H -0.21 -9.23 4.65 99.48 0.46 -8.76 16 12 C 0.10 3.71 4.57 86.30 0.39 4.10 16 13 N -0.68 -21.00 5.89 -517.95 -3.05 -24.05 16 14 C 0.14 3.65 6.17 85.56 0.53 4.17 16 15 C -0.24 -5.94 5.61 -20.14 -0.11 -6.05 16 16 C 0.04 1.10 11.96 85.24 1.02 2.12 16 17 N -0.33 -8.87 12.58 -57.02 -0.72 -9.59 16 18 N -0.36 -8.03 3.81 -325.01 -1.24 -9.27 16 19 C 0.12 1.84 5.02 45.51 0.23 2.07 16 20 C -0.14 -1.38 7.46 31.18 0.23 -1.15 16 21 C -0.12 -1.02 8.09 31.18 0.25 -0.77 16 22 C -0.15 -2.05 7.88 31.12 0.25 -1.80 16 23 C 0.08 1.65 10.60 83.54 0.89 2.54 16 24 H 0.06 2.09 7.88 -2.39 -0.02 2.08 16 25 H 0.03 1.29 4.30 -2.39 -0.01 1.28 16 26 H 0.04 1.53 8.12 -2.39 -0.02 1.52 16 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.03 1.18 2.25 -2.39 -0.01 1.17 16 29 H 0.07 2.28 6.57 -2.39 -0.02 2.27 16 30 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 31 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.34 10.19 6.76 -89.69 -0.61 9.58 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.19 3.88 8.06 -2.91 -0.02 3.85 16 37 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 0.97 6.32 -2.39 -0.02 0.96 16 39 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.19 3.25 6.69 -2.91 -0.02 3.23 16 Total: -1.00 -68.92 337.47 2.38 -66.54 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.13 Total: 19.44 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 5.39 Total: -30.30 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.70 Total: -102.64 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.56 Total: 46.97 kcal Total: -68.92 2.38 -66.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922176844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.948 kcal (2) G-P(sol) polarization free energy of solvation -68.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds