Wall clock time and date at job start Mon Mar 30 2020 01:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47139 * 2 1 4 4 N 1.46896 * 109.47141 * 120.00046 * 2 1 3 5 5 C 1.46908 * 111.00383 * 275.00178 * 4 2 1 6 6 C 1.53002 * 109.47318 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46837 * 179.97438 * 6 5 4 8 8 H 1.07992 * 120.00098 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99558 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99544 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00301 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46777 * 90.00394 * 11 9 7 13 13 H 1.48501 * 109.47543 * 210.00353 * 11 9 7 14 14 H 1.48504 * 109.47248 * 330.00434 * 11 9 7 15 15 C 1.50697 * 109.47185 * 240.00277 * 2 1 3 16 16 C 1.35322 * 126.12418 * 235.18942 * 15 2 1 17 17 C 1.39872 * 107.91718 * 180.26201 * 16 15 2 18 18 N 1.30835 * 108.20273 * 359.73898 * 17 16 15 19 19 N 1.34942 * 126.13003 * 54.99926 * 15 2 1 20 20 C 1.46508 * 126.03324 * 359.97438 * 19 15 2 21 21 C 1.53000 * 109.46810 * 269.71299 * 20 19 15 22 22 C 1.53787 * 113.60890 * 175.00176 * 21 20 19 23 23 C 1.53784 * 87.07923 * 139.98364 * 22 21 20 24 24 C 1.53779 * 87.08045 * 334.56667 * 23 22 21 25 25 H 1.08999 * 109.47602 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46888 * 300.00329 * 1 2 3 27 27 H 1.08999 * 109.47023 * 59.99903 * 1 2 3 28 28 H 1.00903 * 111.00253 * 151.04832 * 4 2 1 29 29 H 1.08999 * 109.46658 * 299.99743 * 5 4 2 30 30 H 1.08999 * 109.46689 * 59.99614 * 5 4 2 31 31 H 1.08998 * 109.46630 * 300.00143 * 6 5 4 32 32 H 1.09004 * 109.46899 * 59.99786 * 6 5 4 33 33 H 0.97008 * 119.99617 * 179.97438 * 10 9 7 34 34 H 1.07997 * 126.04412 * 359.97438 * 16 15 2 35 35 H 1.08002 * 125.90020 * 179.71141 * 17 16 15 36 36 H 1.09003 * 109.46643 * 149.71562 * 20 19 15 37 37 H 1.08993 * 109.47454 * 29.71658 * 20 19 15 38 38 H 1.09000 * 112.90915 * 43.75281 * 21 20 19 39 39 H 1.09004 * 113.61202 * 254.53117 * 22 21 20 40 40 H 1.08994 * 113.61447 * 25.43549 * 22 21 20 41 41 H 1.09002 * 113.61478 * 89.11632 * 23 22 21 42 42 H 1.09004 * 113.61162 * 220.01809 * 23 22 21 43 43 H 1.09006 * 113.61307 * 270.88660 * 24 23 22 44 44 H 1.08999 * 113.69146 * 139.99146 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3470 6 6 2.5950 -0.5333 3.5746 7 6 2.6600 0.4056 4.7515 8 1 2.3648 1.4379 4.6357 9 6 3.0963 -0.0534 5.9762 10 7 3.1525 0.7658 7.0035 11 14 3.6062 -1.8392 6.1767 12 1 5.0565 -1.9753 5.8878 13 1 3.3357 -2.2780 7.5694 14 1 2.8319 -2.6842 5.2324 15 6 2.0323 -0.7103 -1.2305 16 6 2.8866 -1.7596 -1.2530 17 6 3.0990 -2.1129 -2.5896 18 7 2.3931 -1.3083 -3.3421 19 7 1.7081 -0.4164 -2.5070 20 6 0.8039 0.6509 -2.9426 21 6 -0.6233 0.1065 -3.0288 22 6 -1.6730 1.1802 -3.3612 23 6 -2.3408 0.1339 -4.2691 24 6 -0.9589 -0.5301 -4.3878 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.9173 -1.1205 1.0287 29 1 2.7589 1.0461 2.1183 30 1 1.0870 0.6162 2.5525 31 1 1.9183 -1.3566 3.8029 32 1 3.5904 -0.9273 3.3691 33 1 3.4592 0.4428 7.8653 34 1 3.3299 -2.2367 -0.3916 35 1 3.7360 -2.9115 -2.9400 36 1 1.1147 1.0127 -3.9228 37 1 0.8374 1.4709 -2.2253 38 1 -0.8917 -0.5173 -2.1762 39 1 -2.2848 1.4717 -2.5075 40 1 -1.2675 2.0340 -3.9039 41 1 -3.0788 -0.4825 -3.7556 42 1 -2.7105 0.5438 -5.2091 43 1 -0.3581 -0.1437 -5.2112 44 1 -0.9927 -1.6193 -4.3633 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926131156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:42 Heat of formation + Delta-G solvation = 92.119144 kcal Electronic energy + Delta-G solvation = -21579.857401 eV Core-core repulsion = 18534.359491 eV Total energy + Delta-G solvation = -3045.497910 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42079 -39.10704 -36.82851 -33.71613 -33.06964 -31.46282 -29.24957 -28.49877 -28.04721 -25.92158 -24.44437 -23.62244 -22.39541 -20.98456 -20.37271 -19.89239 -19.12144 -17.13211 -16.74826 -16.05378 -15.71275 -15.49807 -14.58831 -14.34791 -14.09964 -14.05316 -13.69235 -13.47842 -13.20560 -12.96644 -12.79347 -12.54109 -12.30394 -12.12654 -11.85373 -11.65681 -11.36365 -11.31693 -11.05417 -10.94211 -10.69359 -10.59418 -10.52475 -10.08771 -9.88906 -9.76899 -9.25794 -9.19972 -8.54394 -8.46431 -8.05015 -6.05220 -4.03860 1.88605 2.44475 2.90204 3.32469 3.40118 3.45973 4.10283 4.27668 4.32581 4.45126 4.46081 4.49846 4.56260 4.73909 4.91637 5.05445 5.09756 5.21471 5.29525 5.32685 5.36791 5.41539 5.51434 5.57062 5.62241 5.70608 5.74733 5.80145 5.88366 5.96561 6.11574 6.13081 6.18669 6.22493 6.32011 6.70520 6.73942 6.97812 7.11394 7.34635 7.53836 7.68255 7.76966 7.85920 8.51543 8.98466 9.57115 11.08035 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.003526 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.119332 B = 7939.337242 C = 8652.524873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.056 0.944 4 N -0.681 5.681 5 C 0.073 3.927 6 C -0.009 4.009 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.067 3.933 10 N -0.904 5.904 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.262 1.262 15 C 0.092 3.908 16 C -0.268 4.268 17 C 0.044 3.956 18 N -0.300 5.300 19 N -0.364 5.364 20 C 0.141 3.859 21 C -0.136 4.136 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.129 4.129 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.342 0.658 29 H 0.023 0.977 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.010 0.990 33 H 0.263 0.737 34 H 0.149 0.851 35 H 0.180 0.820 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 -1.614 -23.340 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 H 0.073 0.927 4 N -0.315 5.315 5 C -0.055 4.055 6 C -0.047 4.047 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.134 4.134 10 N -0.543 5.543 11 Si 0.708 3.292 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.187 1.187 15 C -0.036 4.036 16 C -0.297 4.297 17 C -0.141 4.141 18 N -0.121 5.121 19 N -0.146 5.146 20 C 0.019 3.981 21 C -0.155 4.155 22 C -0.170 4.170 23 C -0.180 4.180 24 C -0.166 4.166 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.167 0.833 35 H 0.197 0.803 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.260 -1.428 -24.229 25.638 hybrid contribution 1.421 -0.614 0.937 1.809 sum -6.839 -2.042 -23.292 24.361 Atomic orbital electron populations 1.22154 0.93625 1.02920 1.02195 1.19995 0.96105 0.94808 0.85602 0.92682 1.60766 1.33917 1.33733 1.03067 1.22051 1.00354 0.93332 0.89758 1.19539 0.95690 0.96762 0.92704 1.21050 1.44404 0.97664 0.92908 0.91124 1.25007 0.94997 0.97637 0.95773 1.69919 1.47703 1.35395 1.01260 0.86751 0.79269 0.85789 0.77362 1.20363 1.21445 1.18680 1.21202 0.97770 0.97833 0.86801 1.21219 1.08025 1.02591 0.97900 1.23784 0.99058 0.99108 0.92177 1.77306 1.12150 1.04736 1.17881 1.48471 1.36148 1.26785 1.03231 1.21782 0.87294 0.87002 1.02023 1.23250 0.93200 0.99355 0.99724 1.22912 0.97267 0.96727 1.00138 1.22806 0.96842 0.98288 1.00028 1.22909 0.96621 1.00473 0.96646 0.91688 0.91387 0.91883 0.83831 0.95835 0.91488 0.95528 0.97217 0.92712 0.83293 0.80292 0.88906 0.88951 0.87602 0.90860 0.89787 0.90125 0.91335 0.89993 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.27 37.16 0.31 -1.55 16 2 C 0.15 2.02 2.67 -68.87 -0.18 1.84 16 3 H 0.06 0.76 7.80 -51.93 -0.41 0.36 16 4 N -0.68 -11.16 6.19 -107.95 -0.67 -11.83 16 5 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 6 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 11 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 15 C 0.09 1.24 6.24 -82.27 -0.51 0.73 16 16 C -0.27 -3.61 9.81 -40.01 -0.39 -4.00 16 17 C 0.04 0.56 12.03 -17.36 -0.21 0.35 16 18 N -0.30 -4.09 12.58 30.63 0.39 -3.70 16 19 N -0.36 -4.56 3.61 -57.14 -0.21 -4.76 16 20 C 0.14 1.33 5.37 -4.04 -0.02 1.31 16 21 C -0.14 -1.16 2.65 -89.81 -0.24 -1.40 16 22 C -0.13 -0.89 7.64 -25.91 -0.20 -1.08 16 23 C -0.14 -0.98 8.08 -25.92 -0.21 -1.19 16 24 C -0.13 -1.07 7.63 -25.92 -0.20 -1.27 16 25 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 26 H 0.07 0.87 7.45 -51.93 -0.39 0.49 16 27 H 0.06 0.63 3.70 -51.93 -0.19 0.43 16 28 H 0.34 5.41 6.47 -39.29 -0.25 5.16 16 29 H 0.02 0.46 8.06 -51.93 -0.42 0.04 16 30 H 0.07 1.31 7.44 -51.93 -0.39 0.93 16 31 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 32 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.15 1.90 6.77 -52.49 -0.36 1.55 16 35 H 0.18 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.09 0.80 7.84 -51.93 -0.41 0.40 16 37 H 0.09 0.78 7.17 -51.93 -0.37 0.41 16 38 H 0.11 1.05 6.09 -51.93 -0.32 0.73 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.67 7.90 -51.93 -0.41 0.26 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -31.67 344.40 -8.83 -40.50 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.21 Total: 3.04 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -2.43 Total: -18.45 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.28 Total: -47.37 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.67 -8.83 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926131156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.623 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds