Wall clock time and date at job start Mon Mar 30 2020 01:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47139 * 2 1 4 4 N 1.46896 * 109.47141 * 120.00046 * 2 1 3 5 5 C 1.46908 * 111.00383 * 275.00178 * 4 2 1 6 6 C 1.53002 * 109.47318 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46837 * 179.97438 * 6 5 4 8 8 H 1.07992 * 120.00098 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99558 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99544 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00301 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46777 * 90.00394 * 11 9 7 13 13 H 1.48501 * 109.47543 * 210.00353 * 11 9 7 14 14 H 1.48504 * 109.47248 * 330.00434 * 11 9 7 15 15 C 1.50697 * 109.47185 * 240.00277 * 2 1 3 16 16 C 1.35322 * 126.12418 * 235.18942 * 15 2 1 17 17 C 1.39872 * 107.91718 * 180.26201 * 16 15 2 18 18 N 1.30835 * 108.20273 * 359.73898 * 17 16 15 19 19 N 1.34942 * 126.13003 * 54.99926 * 15 2 1 20 20 C 1.46508 * 126.03324 * 359.97438 * 19 15 2 21 21 C 1.53000 * 109.46810 * 269.71299 * 20 19 15 22 22 C 1.53787 * 113.60890 * 175.00176 * 21 20 19 23 23 C 1.53784 * 87.07923 * 139.98364 * 22 21 20 24 24 C 1.53779 * 87.08045 * 334.56667 * 23 22 21 25 25 H 1.08999 * 109.47602 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46888 * 300.00329 * 1 2 3 27 27 H 1.08999 * 109.47023 * 59.99903 * 1 2 3 28 28 H 1.00903 * 111.00253 * 151.04832 * 4 2 1 29 29 H 1.08999 * 109.46658 * 299.99743 * 5 4 2 30 30 H 1.08999 * 109.46689 * 59.99614 * 5 4 2 31 31 H 1.08998 * 109.46630 * 300.00143 * 6 5 4 32 32 H 1.09004 * 109.46899 * 59.99786 * 6 5 4 33 33 H 0.97008 * 119.99617 * 179.97438 * 10 9 7 34 34 H 1.07997 * 126.04412 * 359.97438 * 16 15 2 35 35 H 1.08002 * 125.90020 * 179.71141 * 17 16 15 36 36 H 1.09003 * 109.46643 * 149.71562 * 20 19 15 37 37 H 1.08993 * 109.47454 * 29.71658 * 20 19 15 38 38 H 1.09000 * 112.90915 * 43.75281 * 21 20 19 39 39 H 1.09004 * 113.61202 * 254.53117 * 22 21 20 40 40 H 1.08994 * 113.61447 * 25.43549 * 22 21 20 41 41 H 1.09002 * 113.61478 * 89.11632 * 23 22 21 42 42 H 1.09004 * 113.61162 * 220.01809 * 23 22 21 43 43 H 1.09006 * 113.61307 * 270.88660 * 24 23 22 44 44 H 1.08999 * 113.69146 * 139.99146 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3470 6 6 2.5950 -0.5333 3.5746 7 6 2.6600 0.4056 4.7515 8 1 2.3648 1.4379 4.6357 9 6 3.0963 -0.0534 5.9762 10 7 3.1525 0.7658 7.0035 11 14 3.6062 -1.8392 6.1767 12 1 5.0565 -1.9753 5.8878 13 1 3.3357 -2.2780 7.5694 14 1 2.8319 -2.6842 5.2324 15 6 2.0323 -0.7103 -1.2305 16 6 2.8866 -1.7596 -1.2530 17 6 3.0990 -2.1129 -2.5896 18 7 2.3931 -1.3083 -3.3421 19 7 1.7081 -0.4164 -2.5070 20 6 0.8039 0.6509 -2.9426 21 6 -0.6233 0.1065 -3.0288 22 6 -1.6730 1.1802 -3.3612 23 6 -2.3408 0.1339 -4.2691 24 6 -0.9589 -0.5301 -4.3878 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.9173 -1.1205 1.0287 29 1 2.7589 1.0461 2.1183 30 1 1.0870 0.6162 2.5525 31 1 1.9183 -1.3566 3.8029 32 1 3.5904 -0.9273 3.3691 33 1 3.4592 0.4428 7.8653 34 1 3.3299 -2.2367 -0.3916 35 1 3.7360 -2.9115 -2.9400 36 1 1.1147 1.0127 -3.9228 37 1 0.8374 1.4709 -2.2253 38 1 -0.8917 -0.5173 -2.1762 39 1 -2.2848 1.4717 -2.5075 40 1 -1.2675 2.0340 -3.9039 41 1 -3.0788 -0.4825 -3.7556 42 1 -2.7105 0.5438 -5.2091 43 1 -0.3581 -0.1437 -5.2112 44 1 -0.9927 -1.6193 -4.3633 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926131156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:42 Heat of formation + Delta-G solvation = 72.523730 kcal Electronic energy + Delta-G solvation = -21580.707122 eV Core-core repulsion = 18534.359491 eV Total energy + Delta-G solvation = -3046.347631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.37793 -39.75057 -38.14984 -35.35275 -34.32117 -33.10199 -30.47622 -29.88668 -28.85894 -26.52167 -26.14657 -24.34969 -23.62927 -22.40776 -21.66152 -20.64385 -20.02465 -18.90981 -18.16326 -17.02894 -16.61470 -16.32811 -16.26215 -15.59023 -15.31593 -15.02989 -14.91025 -14.72834 -14.43179 -14.33988 -14.04418 -13.52749 -13.36868 -13.05098 -12.99394 -12.91671 -12.61681 -12.50876 -12.31001 -11.89009 -11.74757 -11.73748 -11.70193 -11.48369 -11.39086 -11.27365 -11.16354 -10.75372 -10.17856 -9.49745 -9.35237 -8.28575 -6.32917 0.89416 1.38582 1.41057 1.53908 1.55884 1.91709 2.38408 3.07465 3.16279 3.38750 3.50041 3.68722 3.74584 3.86696 3.99569 4.07870 4.19049 4.22595 4.37769 4.42772 4.46504 4.56413 4.69034 4.73777 4.78290 4.82884 4.84702 4.90598 4.94297 4.97565 5.06956 5.09600 5.16048 5.26874 5.28986 5.35068 5.49720 5.54414 5.65044 5.76869 6.00505 6.15603 6.25394 6.44531 6.75300 6.78787 7.32135 8.87974 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.003526 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.119332 B = 7939.337242 C = 8652.524873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.150 3.850 3 H 0.058 0.942 4 N -0.680 5.680 5 C 0.088 3.912 6 C -0.004 4.004 7 C -0.532 4.532 8 H 0.034 0.966 9 C 0.005 3.995 10 N -0.951 5.951 11 Si 0.952 3.048 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.246 1.246 15 C 0.082 3.918 16 C -0.283 4.283 17 C 0.042 3.958 18 N -0.319 5.319 19 N -0.362 5.362 20 C 0.132 3.868 21 C -0.137 4.137 22 C -0.124 4.124 23 C -0.138 4.138 24 C -0.131 4.131 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.346 0.654 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.018 0.982 33 H 0.266 0.734 34 H 0.153 0.847 35 H 0.207 0.793 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.464 -2.576 -24.975 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.038 3.962 3 H 0.076 0.924 4 N -0.314 5.314 5 C -0.041 4.041 6 C -0.042 4.042 7 C -0.570 4.570 8 H 0.052 0.948 9 C -0.192 4.192 10 N -0.592 5.592 11 Si 0.775 3.225 12 H -0.192 1.192 13 H -0.211 1.211 14 H -0.170 1.170 15 C -0.046 4.046 16 C -0.312 4.312 17 C -0.143 4.143 18 N -0.140 5.140 19 N -0.144 5.144 20 C 0.012 3.988 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.175 4.175 24 C -0.169 4.169 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.167 0.833 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.170 0.830 35 H 0.224 0.776 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.455 -2.383 -25.899 27.349 hybrid contribution 1.454 -0.239 1.395 2.029 sum -7.001 -2.623 -24.505 25.620 Atomic orbital electron populations 1.22127 0.92511 1.02589 1.03048 1.19978 0.96838 0.94633 0.84706 0.92415 1.60675 1.34276 1.33145 1.03323 1.21707 0.99732 0.93073 0.89592 1.19425 0.96226 0.95919 0.92628 1.21399 1.43733 0.97015 0.94899 0.94797 1.25986 0.95087 1.02718 0.95361 1.70068 1.49216 1.37893 1.02022 0.85627 0.79463 0.79721 0.77649 1.19151 1.21142 1.16986 1.21154 0.98219 0.98182 0.87092 1.21423 1.08344 1.02902 0.98576 1.24242 0.98919 0.99413 0.91708 1.77275 1.12787 1.05382 1.18590 1.48689 1.36101 1.26946 1.02702 1.22075 0.87271 0.86637 1.02833 1.23197 0.93086 1.00045 0.99238 1.22916 0.96331 0.96581 1.00321 1.22793 0.96006 0.98101 1.00642 1.22913 0.97830 0.99491 0.96651 0.92588 0.92051 0.89523 0.83349 0.96245 0.91885 0.95746 0.96348 0.92481 0.82974 0.77640 0.87986 0.87846 0.89019 0.90364 0.88373 0.90242 0.90227 0.89760 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.27 71.98 0.60 -2.78 16 2 C 0.15 3.94 2.67 44.17 0.12 4.05 16 3 H 0.06 1.51 7.80 -2.39 -0.02 1.50 16 4 N -0.68 -21.42 6.19 -495.44 -3.07 -24.49 16 5 C 0.09 3.37 5.42 86.30 0.47 3.84 16 6 C 0.00 -0.19 4.30 29.85 0.13 -0.06 16 7 C -0.53 -30.55 9.66 25.60 0.25 -30.30 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 9 C 0.01 0.31 5.47 84.65 0.46 0.77 16 10 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 11 Si 0.95 44.41 27.47 68.60 1.88 46.30 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 15 C 0.08 2.11 6.24 41.41 0.26 2.37 16 16 C -0.28 -7.22 9.81 21.99 0.22 -7.01 16 17 C 0.04 0.99 12.03 85.24 1.03 2.02 16 18 N -0.32 -8.25 12.58 -57.02 -0.72 -8.97 16 19 N -0.36 -8.54 3.61 -334.69 -1.21 -9.75 16 20 C 0.13 2.26 5.37 86.38 0.46 2.72 16 21 C -0.14 -2.10 2.65 -10.27 -0.03 -2.12 16 22 C -0.12 -1.36 7.64 31.12 0.24 -1.12 16 23 C -0.14 -1.63 8.08 31.12 0.25 -1.38 16 24 C -0.13 -2.01 7.63 31.12 0.24 -1.78 16 25 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 26 H 0.06 1.51 7.45 -2.38 -0.02 1.49 16 27 H 0.09 1.57 3.70 -2.39 -0.01 1.56 16 28 H 0.35 10.43 6.47 -89.69 -0.58 9.85 16 29 H 0.02 0.75 8.06 -2.39 -0.02 0.74 16 30 H 0.06 2.46 7.44 -2.39 -0.02 2.44 16 31 H 0.02 1.14 7.20 -2.39 -0.02 1.13 16 32 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 33 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 34 H 0.15 3.67 6.77 -2.91 -0.02 3.65 16 35 H 0.21 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.10 1.56 7.84 -2.39 -0.02 1.54 16 37 H 0.10 1.52 7.17 -2.39 -0.02 1.50 16 38 H 0.09 1.70 6.09 -2.39 -0.01 1.69 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.10 0.83 8.10 -2.39 -0.02 0.81 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 1.25 7.90 -2.38 -0.02 1.23 16 44 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -68.05 344.40 2.22 -65.83 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.34 Total: 21.27 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 4.68 Total: -30.78 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -4.69 Total: -102.62 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.30 kcal Total: -68.05 2.22 -65.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926131156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.358 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds