Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00049 * 2 1 4 4 H 1.48501 * 109.46924 * 239.99595 * 3 2 1 5 5 H 1.48498 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47164 * 119.99881 * 3 2 1 7 7 C 1.37878 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99760 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99739 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.49933 * 59.92919 * 9 7 2 11 11 C 1.53116 * 109.54004 * 299.82111 * 9 7 2 12 12 C 1.53114 * 109.16169 * 182.38559 * 11 9 7 13 13 C 1.53035 * 109.27951 * 57.66118 * 12 11 9 14 14 N 1.46850 * 109.51928 * 300.82115 * 13 12 11 15 15 C 1.46900 * 111.00025 * 185.84185 * 14 13 12 16 16 C 1.52998 * 109.47520 * 169.61764 * 15 14 13 17 17 C 1.52942 * 109.41130 * 296.38446 * 16 15 14 18 18 C 1.53188 * 109.44583 * 176.84048 * 17 16 15 19 19 C 1.53152 * 108.82765 * 56.66996 * 18 17 16 20 20 C 1.52849 * 117.67938 * 91.46269 * 19 18 17 21 21 C 1.52809 * 117.74560 * 160.34275 * 19 18 17 22 22 C 1.53145 * 115.00863 * 306.01834 * 19 18 17 23 23 C 1.52939 * 109.41528 * 176.08924 * 16 15 14 24 24 C 1.46845 * 111.20171 * 61.74210 * 14 13 12 25 25 H 0.97001 * 120.00082 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.52249 * 302.29699 * 11 9 7 27 27 H 1.09005 * 109.51722 * 62.41705 * 11 9 7 28 28 H 1.09005 * 109.50275 * 177.60081 * 12 11 9 29 29 H 1.09004 * 109.50518 * 297.71277 * 12 11 9 30 30 H 1.09000 * 109.46612 * 180.80605 * 13 12 11 31 31 H 1.08994 * 109.46624 * 60.83256 * 13 12 11 32 32 H 1.09000 * 109.47032 * 49.61344 * 15 14 13 33 33 H 1.09005 * 109.47008 * 289.62061 * 15 14 13 34 34 H 1.08998 * 109.40994 * 56.23618 * 16 15 14 35 35 H 1.09005 * 109.47115 * 296.90075 * 17 16 15 36 36 H 1.08994 * 109.47868 * 56.91236 * 17 16 15 37 37 H 1.08997 * 109.63089 * 296.84584 * 18 17 16 38 38 H 1.08996 * 109.66268 * 176.51140 * 18 17 16 39 39 H 1.09000 * 117.49725 * 215.21478 * 20 19 18 40 40 H 1.08989 * 117.50577 * 0.26860 * 20 19 18 41 41 H 1.09001 * 117.50490 * 359.84257 * 21 19 18 42 42 H 1.09001 * 117.50232 * 144.86466 * 21 19 18 43 43 H 1.09002 * 109.57011 * 294.12286 * 22 19 18 44 44 H 1.08997 * 109.57319 * 173.75922 * 22 19 18 45 45 H 1.09001 * 109.47472 * 303.08770 * 23 16 15 46 46 H 1.09003 * 109.46852 * 63.09228 * 23 16 15 47 47 H 1.08994 * 109.46109 * 58.27319 * 24 14 13 48 48 H 1.08999 * 109.46126 * 178.24510 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.6227 -2.5574 -0.8872 11 6 0.3739 -2.5830 1.2540 12 6 -0.3418 -3.9364 1.2767 13 6 0.6981 -5.0585 1.2403 14 7 1.5111 -4.9348 0.0236 15 6 2.4281 -6.0740 -0.1150 16 6 3.0667 -6.0486 -1.5051 17 6 1.9812 -6.2326 -2.5666 18 6 2.6080 -6.1285 -3.9605 19 6 3.7260 -7.1686 -4.0785 20 6 3.3598 -8.5448 -4.6337 21 6 4.1795 -7.5695 -5.4816 22 6 4.7880 -7.1054 -2.9769 23 6 4.0931 -7.1772 -1.6137 24 6 2.2448 -3.6629 0.0022 25 1 -0.4850 0.8400 -0.0004 26 1 0.9975 -2.4856 2.1427 27 1 -0.3634 -1.7802 1.2367 28 1 -0.9348 -4.0192 2.1876 29 1 -0.9952 -4.0172 0.4079 30 1 0.1914 -6.0235 1.2419 31 1 1.3424 -4.9853 2.1164 32 1 1.8743 -7.0039 0.0135 33 1 3.2075 -6.0074 0.6442 34 1 3.5641 -5.0908 -1.6578 35 1 1.5186 -7.2124 -2.4472 36 1 1.2244 -5.4568 -2.4508 37 1 3.0217 -5.1301 -4.1023 38 1 1.8493 -6.3205 -4.7191 39 1 3.8781 -9.4091 -4.2185 40 1 2.3218 -8.7118 -4.9208 41 1 3.6805 -7.0951 -6.3266 42 1 5.2369 -7.7921 -5.6245 43 1 5.3408 -6.1693 -3.0559 44 1 5.4735 -7.9463 -3.0819 45 1 4.8346 -7.0716 -0.8218 46 1 3.5884 -8.1381 -1.5132 47 1 2.8817 -3.5963 0.8841 48 1 2.8613 -3.6144 -0.8954 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930926072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -7.673010 kcal Electronic energy + Delta-G solvation = -22687.045939 eV Core-core repulsion = 19740.761060 eV Total energy + Delta-G solvation = -2946.284879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.57279 -38.08643 -35.38796 -33.28519 -31.51233 -30.76479 -29.81435 -28.18728 -24.92892 -24.33732 -22.75827 -22.54986 -21.85435 -21.19271 -19.89481 -18.62078 -18.41553 -16.33009 -15.36892 -15.32359 -14.98555 -14.60734 -14.30495 -14.04747 -13.48715 -13.40775 -13.08509 -12.77745 -12.75443 -12.32600 -12.24062 -12.08867 -11.86539 -11.63528 -11.47509 -11.23910 -10.91956 -10.89065 -10.85610 -10.63334 -10.59926 -10.26409 -10.04680 -9.90845 -9.82409 -9.76458 -9.48770 -9.37842 -8.94653 -8.64438 -8.26106 -7.55599 -5.93708 -3.99625 3.34234 3.38932 3.41405 3.74257 4.41657 4.54117 4.63830 4.74446 4.85043 4.98073 5.13478 5.27962 5.36330 5.44607 5.45716 5.56772 5.65994 5.69090 5.72876 5.77566 5.82173 5.85335 5.91113 5.97823 6.06123 6.07041 6.12545 6.17337 6.21300 6.27525 6.32137 6.33406 6.46543 6.50714 6.58168 6.71588 6.76493 6.79203 6.83195 7.06345 7.27377 7.46221 7.75051 7.79929 7.91651 8.13844 8.22248 8.53194 9.04411 9.64410 11.12245 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.004432 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.671015 B = 6316.740617 C = 7127.816126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.033 0.967 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.064 3.936 14 N -0.535 5.535 15 C 0.061 3.939 16 C -0.082 4.082 17 C -0.099 4.099 18 C -0.083 4.083 19 C -0.114 4.114 20 C -0.176 4.176 21 C -0.182 4.182 22 C -0.079 4.079 23 C -0.109 4.109 24 C 0.066 3.934 25 H 0.259 0.741 26 H 0.028 0.972 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.015 0.985 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -15.619 -4.924 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.064 4.064 14 N -0.260 5.260 15 C -0.067 4.067 16 C -0.101 4.101 17 C -0.137 4.137 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.213 4.213 21 C -0.219 4.219 22 C -0.116 4.116 23 C -0.147 4.147 24 C -0.060 4.060 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.033 0.967 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.955 -15.494 -5.313 17.112 hybrid contribution 1.093 0.859 0.733 1.571 sum 6.048 -14.635 -4.581 16.485 Atomic orbital electron populations 1.69883 1.05814 1.26344 1.50704 1.24920 0.94800 0.98851 0.95186 0.86718 0.79644 0.83433 0.78530 1.20321 1.21336 1.20432 1.21122 0.92742 0.90771 1.50658 0.93010 1.18645 0.92618 0.90317 0.94716 0.94846 1.21648 1.00004 0.94706 0.98505 1.21665 0.97188 0.96529 1.00062 1.21997 0.95565 0.98538 0.90303 1.61976 1.24181 1.02425 1.37388 1.22080 0.94494 0.94455 0.95720 1.21128 0.95632 0.98705 0.94651 1.21411 0.97895 1.02043 0.92340 1.21194 0.95372 0.97545 0.97936 1.21540 0.99197 0.96600 0.94107 1.22978 1.00553 0.93340 1.04453 1.22979 1.00016 1.04281 0.94613 1.21112 0.95687 1.01548 0.93301 1.21529 0.97984 0.98988 0.96241 1.22339 0.96402 0.88645 0.98659 0.93063 0.95314 0.89221 0.93707 0.92136 0.92629 0.96155 0.91914 0.95911 0.90752 0.92874 0.89994 0.91458 0.92288 0.89303 0.89094 0.89052 0.89244 0.91532 0.92367 0.92356 0.92203 0.96673 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 11.36 55.43 0.63 -24.82 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.64 5.03 -26.61 -0.13 -2.77 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 13 C 0.06 1.14 5.46 -3.83 -0.02 1.12 16 14 N -0.54 -9.79 3.99 -234.67 -0.94 -10.72 16 15 C 0.06 0.92 4.36 -3.82 -0.02 0.90 16 16 C -0.08 -1.14 2.02 -90.68 -0.18 -1.32 16 17 C -0.10 -1.36 5.12 -26.66 -0.14 -1.50 16 18 C -0.08 -1.03 5.68 -26.56 -0.15 -1.18 16 19 C -0.11 -1.26 1.97 -154.53 -0.30 -1.56 16 20 C -0.18 -1.73 9.93 -26.79 -0.27 -2.00 16 21 C -0.18 -1.78 9.99 -26.81 -0.27 -2.05 16 22 C -0.08 -0.85 5.67 -26.57 -0.15 -1.01 16 23 C -0.11 -1.26 5.20 -26.67 -0.14 -1.39 16 24 C 0.07 1.41 4.52 -3.83 -0.02 1.40 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 0.87 8.01 -51.93 -0.42 0.46 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.88 7.98 -51.93 -0.41 0.46 16 33 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.07 1.17 6.28 -51.93 -0.33 0.84 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.33 7.62 -51.93 -0.40 0.93 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.88 8.14 -51.94 -0.42 0.45 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 1.30 6.16 -51.93 -0.32 0.98 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -27.43 358.07 -11.81 -39.24 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -9.34 Total: -0.01 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -2.55 Total: -25.42 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.31 Total: -35.54 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.43 -11.81 -39.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930926072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.569 kcal (2) G-P(sol) polarization free energy of solvation -27.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds