Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00049 * 2 1 4 4 H 1.48501 * 109.46924 * 239.99595 * 3 2 1 5 5 H 1.48498 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47164 * 119.99881 * 3 2 1 7 7 C 1.37878 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99760 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99739 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.49933 * 59.92919 * 9 7 2 11 11 C 1.53116 * 109.54004 * 299.82111 * 9 7 2 12 12 C 1.53114 * 109.16169 * 182.38559 * 11 9 7 13 13 C 1.53035 * 109.27951 * 57.66118 * 12 11 9 14 14 N 1.46850 * 109.51928 * 300.82115 * 13 12 11 15 15 C 1.46900 * 111.00025 * 185.84185 * 14 13 12 16 16 C 1.52998 * 109.47520 * 169.61764 * 15 14 13 17 17 C 1.52942 * 109.41130 * 296.38446 * 16 15 14 18 18 C 1.53188 * 109.44583 * 176.84048 * 17 16 15 19 19 C 1.53152 * 108.82765 * 56.66996 * 18 17 16 20 20 C 1.52849 * 117.67938 * 91.46269 * 19 18 17 21 21 C 1.52809 * 117.74560 * 160.34275 * 19 18 17 22 22 C 1.53145 * 115.00863 * 306.01834 * 19 18 17 23 23 C 1.52939 * 109.41528 * 176.08924 * 16 15 14 24 24 C 1.46845 * 111.20171 * 61.74210 * 14 13 12 25 25 H 0.97001 * 120.00082 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.52249 * 302.29699 * 11 9 7 27 27 H 1.09005 * 109.51722 * 62.41705 * 11 9 7 28 28 H 1.09005 * 109.50275 * 177.60081 * 12 11 9 29 29 H 1.09004 * 109.50518 * 297.71277 * 12 11 9 30 30 H 1.09000 * 109.46612 * 180.80605 * 13 12 11 31 31 H 1.08994 * 109.46624 * 60.83256 * 13 12 11 32 32 H 1.09000 * 109.47032 * 49.61344 * 15 14 13 33 33 H 1.09005 * 109.47008 * 289.62061 * 15 14 13 34 34 H 1.08998 * 109.40994 * 56.23618 * 16 15 14 35 35 H 1.09005 * 109.47115 * 296.90075 * 17 16 15 36 36 H 1.08994 * 109.47868 * 56.91236 * 17 16 15 37 37 H 1.08997 * 109.63089 * 296.84584 * 18 17 16 38 38 H 1.08996 * 109.66268 * 176.51140 * 18 17 16 39 39 H 1.09000 * 117.49725 * 215.21478 * 20 19 18 40 40 H 1.08989 * 117.50577 * 0.26860 * 20 19 18 41 41 H 1.09001 * 117.50490 * 359.84257 * 21 19 18 42 42 H 1.09001 * 117.50232 * 144.86466 * 21 19 18 43 43 H 1.09002 * 109.57011 * 294.12286 * 22 19 18 44 44 H 1.08997 * 109.57319 * 173.75922 * 22 19 18 45 45 H 1.09001 * 109.47472 * 303.08770 * 23 16 15 46 46 H 1.09003 * 109.46852 * 63.09228 * 23 16 15 47 47 H 1.08994 * 109.46109 * 58.27319 * 24 14 13 48 48 H 1.08999 * 109.46126 * 178.24510 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.6227 -2.5574 -0.8872 11 6 0.3739 -2.5830 1.2540 12 6 -0.3418 -3.9364 1.2767 13 6 0.6981 -5.0585 1.2403 14 7 1.5111 -4.9348 0.0236 15 6 2.4281 -6.0740 -0.1150 16 6 3.0667 -6.0486 -1.5051 17 6 1.9812 -6.2326 -2.5666 18 6 2.6080 -6.1285 -3.9605 19 6 3.7260 -7.1686 -4.0785 20 6 3.3598 -8.5448 -4.6337 21 6 4.1795 -7.5695 -5.4816 22 6 4.7880 -7.1054 -2.9769 23 6 4.0931 -7.1772 -1.6137 24 6 2.2448 -3.6629 0.0022 25 1 -0.4850 0.8400 -0.0004 26 1 0.9975 -2.4856 2.1427 27 1 -0.3634 -1.7802 1.2367 28 1 -0.9348 -4.0192 2.1876 29 1 -0.9952 -4.0172 0.4079 30 1 0.1914 -6.0235 1.2419 31 1 1.3424 -4.9853 2.1164 32 1 1.8743 -7.0039 0.0135 33 1 3.2075 -6.0074 0.6442 34 1 3.5641 -5.0908 -1.6578 35 1 1.5186 -7.2124 -2.4472 36 1 1.2244 -5.4568 -2.4508 37 1 3.0217 -5.1301 -4.1023 38 1 1.8493 -6.3205 -4.7191 39 1 3.8781 -9.4091 -4.2185 40 1 2.3218 -8.7118 -4.9208 41 1 3.6805 -7.0951 -6.3266 42 1 5.2369 -7.7921 -5.6245 43 1 5.3408 -6.1693 -3.0559 44 1 5.4735 -7.9463 -3.0819 45 1 4.8346 -7.0716 -0.8218 46 1 3.5884 -8.1381 -1.5132 47 1 2.8817 -3.5963 0.8841 48 1 2.8613 -3.6144 -0.8954 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930926072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -19.785758 kcal Electronic energy + Delta-G solvation = -22687.571187 eV Core-core repulsion = 19740.761060 eV Total energy + Delta-G solvation = -2946.810127 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63575 -39.50961 -36.63431 -35.06649 -33.12980 -31.76394 -31.65291 -29.36061 -26.94960 -25.66730 -23.80311 -23.56028 -23.10494 -22.82939 -21.04500 -20.29312 -19.46506 -18.39942 -16.85972 -16.33626 -16.21288 -16.14278 -15.63234 -15.47936 -14.91542 -14.60415 -14.45140 -14.26870 -14.17006 -13.90279 -13.62653 -13.33250 -13.06238 -12.85553 -12.79665 -12.62668 -12.52934 -12.41749 -12.23692 -11.91711 -11.86508 -11.79550 -11.64865 -11.46760 -11.19780 -10.93239 -10.80626 -10.72931 -10.60857 -10.36307 -10.32497 -9.04727 -8.07320 -6.21403 1.40782 1.42038 1.49690 2.42892 2.93848 3.14203 3.19481 3.74815 3.86556 3.87851 4.08018 4.15226 4.20229 4.25792 4.35242 4.41619 4.45224 4.51827 4.61841 4.64196 4.70347 4.72979 4.78465 4.83850 4.84658 4.92999 4.97405 5.03279 5.08363 5.09213 5.12955 5.15560 5.23902 5.25686 5.29543 5.31068 5.35252 5.41668 5.46734 5.54102 5.63556 5.66320 5.68430 5.99220 6.15638 6.23726 6.44683 6.49119 6.91306 7.46269 8.97139 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.004432 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.671015 B = 6316.740617 C = 7127.816126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.055 3.945 10 H -0.005 1.005 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.066 3.934 14 N -0.543 5.543 15 C 0.063 3.937 16 C -0.079 4.079 17 C -0.093 4.093 18 C -0.081 4.081 19 C -0.129 4.129 20 C -0.166 4.166 21 C -0.178 4.178 22 C -0.077 4.077 23 C -0.102 4.102 24 C 0.085 3.915 25 H 0.260 0.740 26 H 0.019 0.981 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.023 0.977 32 H 0.084 0.916 33 H 0.025 0.975 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.007 0.993 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.496 -17.744 -4.835 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.067 0.933 9 C 0.036 3.964 10 H 0.013 0.987 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.062 4.062 14 N -0.267 5.267 15 C -0.065 4.065 16 C -0.098 4.098 17 C -0.130 4.130 18 C -0.119 4.119 19 C -0.129 4.129 20 C -0.203 4.203 21 C -0.215 4.215 22 C -0.114 4.114 23 C -0.140 4.140 24 C -0.043 4.043 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.041 0.959 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.025 0.975 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.022 -17.634 -5.226 19.353 hybrid contribution 0.723 1.524 0.674 1.817 sum 6.745 -16.109 -4.551 18.048 Atomic orbital electron populations 1.70029 1.07140 1.27080 1.51169 1.25695 0.95639 1.02212 0.94770 0.85713 0.78483 0.79282 0.78782 1.19703 1.20817 1.19719 1.21495 0.92859 0.92336 1.50899 0.93331 1.18561 0.92956 0.91315 0.93597 0.98663 1.21459 0.99060 0.96374 0.97324 1.21574 0.97546 0.94828 1.00804 1.22020 0.95040 0.99061 0.90033 1.61922 1.24754 1.02075 1.37955 1.22178 0.94248 0.93680 0.96396 1.21082 0.96060 0.98627 0.94012 1.21302 0.97182 1.01343 0.93201 1.21120 0.96113 0.97351 0.97274 1.21463 0.99041 0.97141 0.95242 1.23040 1.00842 0.92901 1.03539 1.23048 1.00775 1.03908 0.93808 1.21099 0.95748 1.01807 0.92776 1.21468 0.97385 0.98204 0.96932 1.21953 0.95201 0.89159 0.97995 0.93084 0.96166 0.92490 0.91331 0.93134 0.89299 0.95884 0.89715 0.95635 0.93353 0.91722 0.93245 0.93370 0.91909 0.87975 0.88952 0.89080 0.88144 0.92605 0.90486 0.91764 0.90928 0.97472 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.09 11.36 21.45 0.24 -53.84 16 2 C 0.02 0.89 5.30 84.66 0.45 1.34 16 3 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -30.58 8.56 25.60 0.22 -30.36 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.69 16 9 C 0.05 2.85 2.26 -11.49 -0.03 2.83 16 10 H 0.00 -0.29 8.14 -2.39 -0.02 -0.30 16 11 C -0.10 -5.11 5.03 30.67 0.15 -4.96 16 12 C -0.11 -4.29 6.09 30.64 0.19 -4.10 16 13 C 0.07 2.24 5.46 86.32 0.47 2.71 16 14 N -0.54 -19.58 3.99 -896.36 -3.58 -23.15 16 15 C 0.06 1.78 4.36 86.30 0.38 2.16 16 16 C -0.08 -2.12 2.02 -10.83 -0.02 -2.14 16 17 C -0.09 -2.51 5.12 30.64 0.16 -2.35 16 18 C -0.08 -2.01 5.68 30.71 0.17 -1.83 16 19 C -0.13 -2.61 1.97 -52.20 -0.10 -2.71 16 20 C -0.17 -2.80 9.93 30.56 0.30 -2.50 16 21 C -0.18 -3.11 9.99 30.54 0.31 -2.81 16 22 C -0.08 -1.51 5.67 30.70 0.17 -1.33 16 23 C -0.10 -2.10 5.20 30.63 0.16 -1.94 16 24 C 0.08 3.69 4.52 86.33 0.39 4.08 16 25 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 3.16 6.16 -2.38 -0.01 3.15 16 28 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.05 2.06 8.14 -2.38 -0.02 2.05 16 30 H 0.09 2.47 8.01 -2.39 -0.02 2.45 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 2.08 7.98 -2.39 -0.02 2.06 16 33 H 0.03 0.73 8.12 -2.38 -0.02 0.71 16 34 H 0.05 1.55 6.28 -2.39 -0.01 1.53 16 35 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 1.65 7.62 -2.39 -0.02 1.63 16 37 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.47 8.09 -2.39 -0.02 1.45 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.06 2.48 6.16 -2.39 -0.01 2.47 16 Total: -1.00 -60.85 358.07 2.94 -57.91 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.88 Total: 16.52 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 3.37 Total: -43.94 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -3.33 Total: -77.00 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -60.85 2.94 -57.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930926072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.127 kcal (2) G-P(sol) polarization free energy of solvation -60.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds