Wall clock time and date at job start Mon Mar 30 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00583 * 2 1 4 4 H 1.48499 * 109.47378 * 270.00585 * 3 2 1 5 5 H 1.48507 * 109.47236 * 30.00258 * 3 2 1 6 6 H 1.48499 * 109.47381 * 150.00315 * 3 2 1 7 7 C 1.37878 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00706 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99792 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50994 * 299.92605 * 9 7 2 11 11 C 1.53123 * 109.50086 * 60.00570 * 9 7 2 12 12 C 1.53123 * 109.16222 * 177.63722 * 11 9 7 13 13 C 1.53039 * 109.27124 * 302.34170 * 12 11 9 14 14 N 1.46844 * 109.52587 * 59.18299 * 13 12 11 15 15 C 1.46898 * 111.00185 * 174.15820 * 14 13 12 16 16 C 1.53002 * 109.47365 * 63.98072 * 15 14 13 17 17 C 1.52936 * 109.41194 * 149.42229 * 16 15 14 18 18 C 1.53183 * 109.44807 * 183.08964 * 17 16 15 19 19 C 1.53149 * 108.88451 * 303.43114 * 18 17 16 20 20 C 1.52808 * 117.75067 * 199.61980 * 19 18 17 21 21 C 1.52846 * 117.68277 * 268.50526 * 19 18 17 22 22 C 1.53150 * 115.00498 * 53.93893 * 19 18 17 23 23 C 1.52944 * 109.40883 * 269.78366 * 16 15 14 24 24 C 1.46849 * 111.19777 * 298.25266 * 14 13 12 25 25 H 0.97002 * 119.99295 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.52571 * 57.72696 * 11 9 7 27 27 H 1.09009 * 109.57322 * 297.56624 * 11 9 7 28 28 H 1.08990 * 109.50378 * 182.40365 * 12 11 9 29 29 H 1.08995 * 109.50247 * 62.28057 * 12 11 9 30 30 H 1.09002 * 109.46832 * 299.16235 * 13 12 11 31 31 H 1.09007 * 109.45619 * 179.19200 * 13 12 11 32 32 H 1.09006 * 109.46982 * 303.97874 * 15 14 13 33 33 H 1.09002 * 109.47140 * 183.98066 * 15 14 13 34 34 H 1.09000 * 109.34738 * 29.59852 * 16 15 14 35 35 H 1.08999 * 109.47452 * 303.08206 * 17 16 15 36 36 H 1.08999 * 109.47967 * 63.09435 * 17 16 15 37 37 H 1.09004 * 109.56744 * 183.61785 * 18 17 16 38 38 H 1.08996 * 109.67231 * 63.31445 * 18 17 16 39 39 H 1.09002 * 117.50096 * 215.11060 * 20 19 18 40 40 H 1.09000 * 117.50176 * 0.15852 * 20 19 18 41 41 H 1.09009 * 117.50317 * 359.72722 * 21 19 18 42 42 H 1.08998 * 117.50606 * 144.74581 * 21 19 18 43 43 H 1.08998 * 109.57245 * 186.23992 * 22 19 18 44 44 H 1.09005 * 109.66378 * 65.94494 * 22 19 18 45 45 H 1.08999 * 109.47249 * 296.90229 * 23 16 15 46 46 H 1.08996 * 109.47532 * 56.91332 * 23 16 15 47 47 H 1.09000 * 109.46346 * 181.75743 * 24 14 13 48 48 H 1.08997 * 109.46002 * 301.73153 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6253 -2.5583 0.8901 11 6 0.3699 -2.5807 -1.2503 12 6 -0.3467 -3.9337 -1.2727 13 6 0.6928 -5.0565 -1.2408 14 7 1.5094 -4.9349 -0.0265 15 6 2.4262 -6.0748 0.1076 16 6 3.4207 -6.0691 -1.0551 17 6 4.7465 -6.6756 -0.5930 18 6 5.7668 -6.6000 -1.7330 19 6 5.1914 -7.3113 -2.9612 20 6 6.1695 -7.7635 -4.0447 21 6 5.5050 -8.7974 -3.1328 22 6 3.8112 -6.8194 -3.4067 23 6 2.8517 -6.8881 -2.2146 24 6 2.2440 -3.6636 -0.0056 25 1 -0.4849 0.8401 0.0004 26 1 0.9908 -2.4826 -2.1408 27 1 -0.3676 -1.7783 -1.2302 28 1 -0.9424 -4.0150 -2.1817 29 1 -0.9973 -4.0153 -0.4020 30 1 1.3344 -4.9825 -2.1189 31 1 0.1853 -6.0212 -1.2422 32 1 1.8558 -7.0036 0.0933 33 1 2.9685 -5.9961 1.0499 34 1 3.5866 -5.0430 -1.3833 35 1 5.1203 -6.1197 0.2668 36 1 4.5914 -7.7174 -0.3126 37 1 6.6920 -7.0891 -1.4280 38 1 5.9684 -5.5568 -1.9764 39 1 5.8317 -7.7144 -5.0799 40 1 7.2279 -7.5578 -3.8850 41 1 6.1263 -9.2718 -2.3731 42 1 4.7299 -9.4285 -3.5676 43 1 3.4397 -7.4539 -4.2114 44 1 3.8843 -5.7900 -3.7577 45 1 2.7334 -7.9259 -1.9028 46 1 1.8823 -6.4829 -2.5045 47 1 2.8633 -3.6166 0.8901 48 1 2.8782 -3.5961 -0.8895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930926074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:18 Heat of formation + Delta-G solvation = -0.771465 kcal Electronic energy + Delta-G solvation = -22919.967848 eV Core-core repulsion = 19973.982242 eV Total energy + Delta-G solvation = -2945.985606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.87611 -38.19442 -35.33848 -33.18692 -31.55521 -31.00569 -29.77206 -28.06107 -24.97300 -24.63299 -22.91170 -22.62843 -21.76896 -21.05702 -20.35547 -18.84892 -18.20649 -16.35529 -15.46183 -15.40462 -15.06475 -14.48930 -14.34528 -13.97453 -13.65237 -13.48892 -13.33356 -12.96710 -12.58297 -12.31208 -12.18540 -12.06068 -11.88529 -11.67330 -11.56515 -11.20499 -11.06965 -10.98222 -10.90925 -10.66863 -10.61280 -10.31914 -10.05918 -10.02414 -9.92598 -9.67427 -9.65031 -9.38536 -8.96708 -8.65320 -8.26197 -7.45953 -5.93767 -3.99726 3.32683 3.39541 3.42578 3.65810 4.44021 4.49165 4.63185 4.71772 4.75575 4.87871 5.03811 5.09024 5.34439 5.36041 5.38874 5.49224 5.53064 5.59573 5.61346 5.74073 5.74989 5.86158 5.90123 5.93569 5.98184 5.98980 6.02998 6.11190 6.16225 6.19082 6.22850 6.24319 6.39110 6.46570 6.50410 6.57632 6.66190 6.78961 6.85277 7.05714 7.27633 7.46614 7.75348 7.80256 7.92180 8.14121 8.22634 8.53071 9.04576 9.64378 11.12147 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.004376 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.382902 B = 6396.702252 C = 6950.023195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.054 3.946 10 H 0.033 0.967 11 C -0.109 4.109 12 C -0.120 4.120 13 C 0.059 3.941 14 N -0.536 5.536 15 C 0.059 3.941 16 C -0.129 4.129 17 C -0.105 4.105 18 C -0.081 4.081 19 C -0.114 4.114 20 C -0.181 4.181 21 C -0.176 4.176 22 C -0.081 4.081 23 C -0.117 4.117 24 C 0.066 3.934 25 H 0.259 0.741 26 H 0.028 0.972 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.723 -15.902 -5.501 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.035 3.965 10 H 0.051 0.949 11 C -0.147 4.147 12 C -0.158 4.158 13 C -0.069 4.069 14 N -0.259 5.259 15 C -0.069 4.069 16 C -0.149 4.149 17 C -0.143 4.143 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.218 4.218 21 C -0.213 4.213 22 C -0.119 4.119 23 C -0.154 4.154 24 C -0.061 4.061 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.233 -15.773 -5.078 18.080 hybrid contribution 1.121 0.861 -0.822 1.635 sum 8.354 -14.912 -5.899 18.082 Atomic orbital electron populations 1.69897 1.05826 1.26221 1.50799 1.24926 0.94805 0.98883 0.95207 0.86653 0.79918 0.83760 0.77993 1.20822 1.21271 1.19989 1.21158 0.92783 0.90741 1.50515 0.92928 1.18667 0.92659 0.90377 0.94775 0.94917 1.21636 0.99971 0.94711 0.98414 1.21706 0.97327 0.96702 1.00026 1.22189 0.95463 0.98259 0.90969 1.62231 1.23500 1.02532 1.37590 1.22286 0.93122 0.94593 0.96948 1.21916 0.95575 1.00606 0.96784 1.21513 0.94775 1.00749 0.97243 1.21145 0.97412 1.00118 0.93202 1.21497 0.96308 0.96113 0.97519 1.22983 0.98278 1.04490 0.96040 1.22984 1.03395 0.92019 1.02863 1.21140 0.92250 1.01020 0.97457 1.21862 0.98815 0.99941 0.94831 1.22320 0.96455 0.88611 0.98677 0.93122 0.95307 0.89236 0.93743 0.92246 0.94933 0.92716 0.91719 0.91298 0.90126 0.91950 0.92237 0.92296 0.91528 0.89091 0.89101 0.89162 0.89160 0.92308 0.91585 0.92372 0.90812 0.92537 0.95844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 11.35 55.43 0.63 -24.88 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.13 8.57 -34.44 -0.29 -14.43 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.60 5.02 -26.60 -0.13 -2.74 16 12 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 13 C 0.06 1.03 3.98 -3.83 -0.02 1.01 16 14 N -0.54 -9.84 4.86 -234.66 -1.14 -10.98 16 15 C 0.06 0.88 5.19 -3.82 -0.02 0.86 16 16 C -0.13 -1.73 1.56 -90.68 -0.14 -1.87 16 17 C -0.10 -1.22 5.06 -26.67 -0.14 -1.36 16 18 C -0.08 -0.90 5.67 -26.56 -0.15 -1.05 16 19 C -0.11 -1.22 1.97 -154.53 -0.31 -1.52 16 20 C -0.18 -1.72 9.99 -26.81 -0.27 -1.98 16 21 C -0.18 -1.65 9.93 -26.79 -0.27 -1.92 16 22 C -0.08 -0.93 5.67 -26.56 -0.15 -1.08 16 23 C -0.12 -1.43 4.71 -26.67 -0.13 -1.56 16 24 C 0.07 1.40 4.24 -3.83 -0.02 1.39 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 2.39 6.15 -51.92 -0.32 2.07 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.03 0.56 5.73 -51.93 -0.30 0.27 16 31 H 0.05 0.85 7.97 -51.92 -0.41 0.44 16 32 H 0.06 0.89 7.79 -51.93 -0.40 0.48 16 33 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 34 H 0.08 1.30 5.58 -51.93 -0.29 1.01 16 35 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.80 8.14 -51.92 -0.42 0.37 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.96 4.85 -51.93 -0.25 0.71 16 47 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 48 H 0.02 0.50 6.12 -51.93 -0.32 0.18 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -27.65 350.37 -11.73 -39.38 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.99 Total: 0.83 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -2.49 Total: -25.98 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.51 Total: -35.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.65 -11.73 -39.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930926074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.605 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds