Wall clock time and date at job start Mon Mar 30 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00583 * 2 1 4 4 H 1.48499 * 109.47378 * 270.00585 * 3 2 1 5 5 H 1.48507 * 109.47236 * 30.00258 * 3 2 1 6 6 H 1.48499 * 109.47381 * 150.00315 * 3 2 1 7 7 C 1.37878 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00706 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99792 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50994 * 299.92605 * 9 7 2 11 11 C 1.53123 * 109.50086 * 60.00570 * 9 7 2 12 12 C 1.53123 * 109.16222 * 177.63722 * 11 9 7 13 13 C 1.53039 * 109.27124 * 302.34170 * 12 11 9 14 14 N 1.46844 * 109.52587 * 59.18299 * 13 12 11 15 15 C 1.46898 * 111.00185 * 174.15820 * 14 13 12 16 16 C 1.53002 * 109.47365 * 63.98072 * 15 14 13 17 17 C 1.52936 * 109.41194 * 149.42229 * 16 15 14 18 18 C 1.53183 * 109.44807 * 183.08964 * 17 16 15 19 19 C 1.53149 * 108.88451 * 303.43114 * 18 17 16 20 20 C 1.52808 * 117.75067 * 199.61980 * 19 18 17 21 21 C 1.52846 * 117.68277 * 268.50526 * 19 18 17 22 22 C 1.53150 * 115.00498 * 53.93893 * 19 18 17 23 23 C 1.52944 * 109.40883 * 269.78366 * 16 15 14 24 24 C 1.46849 * 111.19777 * 298.25266 * 14 13 12 25 25 H 0.97002 * 119.99295 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.52571 * 57.72696 * 11 9 7 27 27 H 1.09009 * 109.57322 * 297.56624 * 11 9 7 28 28 H 1.08990 * 109.50378 * 182.40365 * 12 11 9 29 29 H 1.08995 * 109.50247 * 62.28057 * 12 11 9 30 30 H 1.09002 * 109.46832 * 299.16235 * 13 12 11 31 31 H 1.09007 * 109.45619 * 179.19200 * 13 12 11 32 32 H 1.09006 * 109.46982 * 303.97874 * 15 14 13 33 33 H 1.09002 * 109.47140 * 183.98066 * 15 14 13 34 34 H 1.09000 * 109.34738 * 29.59852 * 16 15 14 35 35 H 1.08999 * 109.47452 * 303.08206 * 17 16 15 36 36 H 1.08999 * 109.47967 * 63.09435 * 17 16 15 37 37 H 1.09004 * 109.56744 * 183.61785 * 18 17 16 38 38 H 1.08996 * 109.67231 * 63.31445 * 18 17 16 39 39 H 1.09002 * 117.50096 * 215.11060 * 20 19 18 40 40 H 1.09000 * 117.50176 * 0.15852 * 20 19 18 41 41 H 1.09009 * 117.50317 * 359.72722 * 21 19 18 42 42 H 1.08998 * 117.50606 * 144.74581 * 21 19 18 43 43 H 1.08998 * 109.57245 * 186.23992 * 22 19 18 44 44 H 1.09005 * 109.66378 * 65.94494 * 22 19 18 45 45 H 1.08999 * 109.47249 * 296.90229 * 23 16 15 46 46 H 1.08996 * 109.47532 * 56.91332 * 23 16 15 47 47 H 1.09000 * 109.46346 * 181.75743 * 24 14 13 48 48 H 1.08997 * 109.46002 * 301.73153 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6253 -2.5583 0.8901 11 6 0.3699 -2.5807 -1.2503 12 6 -0.3467 -3.9337 -1.2727 13 6 0.6928 -5.0565 -1.2408 14 7 1.5094 -4.9349 -0.0265 15 6 2.4262 -6.0748 0.1076 16 6 3.4207 -6.0691 -1.0551 17 6 4.7465 -6.6756 -0.5930 18 6 5.7668 -6.6000 -1.7330 19 6 5.1914 -7.3113 -2.9612 20 6 6.1695 -7.7635 -4.0447 21 6 5.5050 -8.7974 -3.1328 22 6 3.8112 -6.8194 -3.4067 23 6 2.8517 -6.8881 -2.2146 24 6 2.2440 -3.6636 -0.0056 25 1 -0.4849 0.8401 0.0004 26 1 0.9908 -2.4826 -2.1408 27 1 -0.3676 -1.7783 -1.2302 28 1 -0.9424 -4.0150 -2.1817 29 1 -0.9973 -4.0153 -0.4020 30 1 1.3344 -4.9825 -2.1189 31 1 0.1853 -6.0212 -1.2422 32 1 1.8558 -7.0036 0.0933 33 1 2.9685 -5.9961 1.0499 34 1 3.5866 -5.0430 -1.3833 35 1 5.1203 -6.1197 0.2668 36 1 4.5914 -7.7174 -0.3126 37 1 6.6920 -7.0891 -1.4280 38 1 5.9684 -5.5568 -1.9764 39 1 5.8317 -7.7144 -5.0799 40 1 7.2279 -7.5578 -3.8850 41 1 6.1263 -9.2718 -2.3731 42 1 4.7299 -9.4285 -3.5676 43 1 3.4397 -7.4539 -4.2114 44 1 3.8843 -5.7900 -3.7577 45 1 2.7334 -7.9259 -1.9028 46 1 1.8823 -6.4829 -2.5045 47 1 2.8633 -3.6166 0.8901 48 1 2.8782 -3.5961 -0.8895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930926074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:17 Heat of formation + Delta-G solvation = -14.002615 kcal Electronic energy + Delta-G solvation = -22920.541594 eV Core-core repulsion = 19973.982242 eV Total energy + Delta-G solvation = -2946.559352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.96901 -39.47357 -36.66035 -34.90034 -33.14756 -32.06683 -31.47867 -29.21774 -26.94578 -25.95559 -23.99540 -23.47523 -23.08056 -22.67926 -21.52582 -20.16967 -19.44533 -18.40804 -16.89882 -16.28979 -16.22953 -16.19449 -15.77498 -15.17447 -15.00524 -14.77396 -14.55402 -14.34567 -14.15100 -13.83531 -13.44532 -13.21253 -13.08749 -12.97976 -12.84140 -12.64876 -12.51001 -12.38533 -12.26498 -12.05177 -11.89066 -11.79472 -11.72345 -11.37584 -11.22450 -10.93081 -10.85131 -10.74229 -10.64187 -10.45949 -10.36309 -8.91114 -8.07306 -6.21453 1.40523 1.41041 1.51402 2.42967 2.89973 3.19406 3.24291 3.66796 3.81476 3.86443 4.01930 4.09160 4.14776 4.26039 4.33264 4.37240 4.44406 4.46753 4.56544 4.62594 4.66671 4.68930 4.80744 4.81579 4.88136 4.92369 4.96736 4.99209 5.05128 5.07269 5.11553 5.18469 5.20113 5.21846 5.24530 5.26329 5.31043 5.36504 5.42889 5.53977 5.55234 5.62129 5.65732 5.99656 6.15799 6.24732 6.46769 6.49696 6.91624 7.46335 8.97264 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.004376 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.382902 B = 6396.702252 C = 6950.023195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.051 3.949 10 H -0.006 1.006 11 C -0.101 4.101 12 C -0.114 4.114 13 C 0.065 3.935 14 N -0.548 5.548 15 C 0.061 3.939 16 C -0.121 4.121 17 C -0.100 4.100 18 C -0.080 4.080 19 C -0.130 4.130 20 C -0.180 4.180 21 C -0.164 4.164 22 C -0.079 4.079 23 C -0.112 4.112 24 C 0.085 3.915 25 H 0.260 0.740 26 H 0.020 0.980 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.749 -17.926 -6.207 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.033 3.967 10 H 0.012 0.988 11 C -0.140 4.140 12 C -0.152 4.152 13 C -0.062 4.062 14 N -0.271 5.271 15 C -0.067 4.067 16 C -0.141 4.141 17 C -0.138 4.138 18 C -0.117 4.117 19 C -0.130 4.130 20 C -0.216 4.216 21 C -0.201 4.201 22 C -0.117 4.117 23 C -0.150 4.150 24 C -0.043 4.043 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.268 -17.814 -5.785 20.474 hybrid contribution 0.787 1.482 -0.589 1.778 sum 9.055 -16.332 -6.374 19.732 Atomic orbital electron populations 1.70042 1.07166 1.26999 1.51285 1.25707 0.95644 1.02264 0.94806 0.85643 0.78781 0.79543 0.78211 1.20150 1.20818 1.19328 1.21522 0.92884 0.92282 1.50717 0.93254 1.18600 0.93050 0.91479 0.93613 0.98825 1.21430 0.98988 0.96300 0.97245 1.21635 0.97757 0.95156 1.00680 1.22176 0.94792 0.98485 0.90747 1.62154 1.24269 1.02288 1.38341 1.22366 0.93111 0.93683 0.97567 1.21778 0.96308 0.99314 0.96707 1.21468 0.93872 1.01240 0.97256 1.21108 0.97836 0.99432 0.93323 1.21445 0.96186 0.97395 0.97934 1.23050 0.98350 1.04209 0.96038 1.23044 1.03309 0.91098 1.02653 1.21095 0.92834 1.00266 0.97485 1.21803 0.98408 1.00269 0.94477 1.21926 0.95226 0.88991 0.98166 0.93102 0.96140 0.92583 0.91425 0.93358 0.94481 0.89665 0.89629 0.91298 0.93193 0.92513 0.90777 0.90973 0.93219 0.88707 0.88589 0.88326 0.88434 0.91124 0.93442 0.90897 0.91618 0.93255 0.96173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.20 11.35 21.45 0.24 -53.96 16 2 C 0.01 0.82 5.30 84.66 0.45 1.27 16 3 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.54 -30.45 8.57 25.60 0.22 -30.23 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.05 2.69 2.26 -11.48 -0.03 2.66 16 10 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 11 C -0.10 -4.99 5.02 30.68 0.15 -4.83 16 12 C -0.11 -4.49 6.09 30.65 0.19 -4.30 16 13 C 0.07 2.18 3.98 86.33 0.34 2.53 16 14 N -0.55 -19.74 4.86 -896.34 -4.35 -24.10 16 15 C 0.06 1.69 5.19 86.30 0.45 2.13 16 16 C -0.12 -3.09 1.56 -10.83 -0.02 -3.10 16 17 C -0.10 -2.17 5.06 30.63 0.16 -2.01 16 18 C -0.08 -1.63 5.67 30.71 0.17 -1.46 16 19 C -0.13 -2.48 1.97 -52.20 -0.10 -2.58 16 20 C -0.18 -2.97 9.99 30.54 0.31 -2.67 16 21 C -0.16 -2.56 9.93 30.56 0.30 -2.25 16 22 C -0.08 -1.68 5.67 30.70 0.17 -1.50 16 23 C -0.11 -2.48 4.71 30.64 0.14 -2.34 16 24 C 0.08 3.66 4.24 86.33 0.37 4.02 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 3.12 6.15 -2.38 -0.01 3.10 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.23 5.73 -2.39 -0.01 1.22 16 31 H 0.09 2.38 7.97 -2.38 -0.02 2.36 16 32 H 0.09 2.07 7.79 -2.38 -0.02 2.05 16 33 H 0.07 1.92 7.76 -2.39 -0.02 1.90 16 34 H 0.05 1.60 5.58 -2.39 -0.01 1.59 16 35 H 0.06 1.28 8.05 -2.39 -0.02 1.26 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.28 8.09 -2.38 -0.02 1.26 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 44 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.56 4.85 -2.39 -0.01 1.55 16 47 H 0.05 2.16 8.12 -2.39 -0.02 2.14 16 48 H 0.02 0.89 6.12 -2.39 -0.01 0.87 16 Total: -1.00 -61.04 350.37 2.09 -58.96 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.89 Total: 17.23 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 3.28 Total: -44.66 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -4.11 Total: -78.05 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -61.04 2.09 -58.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930926074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.955 kcal (2) G-P(sol) polarization free energy of solvation -61.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds