Wall clock time and date at job start Mon Mar 30 2020 02:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46632 * 110.99795 * 2 1 4 4 C 1.52892 * 108.31147 * 188.11123 * 3 2 1 5 5 C 1.52977 * 109.63521 * 295.28939 * 4 3 2 6 6 H 1.09002 * 111.11916 * 284.86259 * 5 4 3 7 7 C 1.55157 * 107.06324 * 162.37385 * 5 4 3 8 8 N 1.47780 * 104.99174 * 272.63195 * 7 5 4 9 9 C 1.46894 * 111.00046 * 207.66978 * 8 7 5 10 10 C 1.53001 * 109.47189 * 185.37066 * 9 8 7 11 11 H 1.09003 * 109.47081 * 305.25508 * 10 9 8 12 12 C 1.47198 * 109.47222 * 65.25140 * 10 9 8 13 13 N 6.38261 * 137.68435 * 229.51164 * 2 1 3 14 14 C 1.53003 * 109.47380 * 185.25512 * 10 9 8 15 15 C 1.50701 * 109.47095 * 174.99652 * 14 10 9 16 16 H 1.08003 * 120.00031 * 0.02562 * 15 14 10 17 17 C 1.37878 * 119.99639 * 179.97438 * 15 14 10 18 18 N 1.31508 * 120.00080 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99476 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47634 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46913 * 120.00613 * 19 17 15 22 22 H 1.48509 * 109.47097 * 240.00162 * 19 17 15 23 23 C 1.47627 * 107.60177 * 329.30930 * 8 7 5 24 24 C 1.52205 * 111.78643 * 49.71353 * 5 4 3 25 25 H 1.08997 * 105.37296 * 207.35200 * 24 5 4 26 26 C 1.45353 * 111.00317 * 125.61185 * 2 1 3 27 27 H 1.08994 * 109.47278 * 63.95340 * 1 2 3 28 28 H 1.09002 * 109.47123 * 183.95596 * 1 2 3 29 29 H 1.09004 * 109.46780 * 303.95289 * 1 2 3 30 30 H 1.08998 * 109.69782 * 68.40759 * 3 2 1 31 31 H 1.09003 * 109.72960 * 307.83783 * 3 2 1 32 32 H 1.09001 * 109.43393 * 55.32941 * 4 3 2 33 33 H 1.08996 * 109.43724 * 175.24330 * 4 3 2 34 34 H 1.09007 * 110.33287 * 153.76687 * 7 5 4 35 35 H 1.08999 * 110.35805 * 31.52114 * 7 5 4 36 36 H 1.09005 * 109.47113 * 305.36867 * 9 8 7 37 37 H 1.08994 * 109.47388 * 65.36919 * 9 8 7 38 38 H 1.09000 * 109.46391 * 294.99718 * 14 10 9 39 39 H 1.09001 * 109.47077 * 54.99397 * 14 10 9 40 40 H 0.97006 * 119.99998 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.92395 * 258.79506 * 23 8 7 42 42 H 1.08997 * 109.93087 * 137.45903 * 23 8 7 43 43 H 1.09006 * 108.22297 * 309.46988 * 26 2 1 44 44 H 1.09005 * 108.21951 * 66.19649 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9945 1.3689 0.0000 4 6 3.5081 1.3025 -0.2048 5 6 4.1580 0.6002 0.9888 6 1 4.1898 1.2545 1.8599 7 6 5.5776 0.1620 0.5415 8 7 5.3905 -1.1677 -0.0757 9 6 6.6087 -1.9798 0.0442 10 6 6.4237 -3.2925 -0.7197 11 1 5.5247 -3.7961 -0.3642 12 6 6.2910 -3.0089 -2.1579 13 7 6.1886 -2.7899 -3.2679 14 6 7.6385 -4.1933 -0.4874 15 6 7.4027 -5.5322 -1.1377 16 1 6.4790 -5.7216 -1.6644 17 6 8.3666 -6.5150 -1.0612 18 7 9.4916 -6.2843 -0.4203 19 14 8.0740 -8.1749 -1.8667 20 1 6.7400 -8.1804 -2.5189 21 1 9.1243 -8.4219 -2.8869 22 1 8.1255 -9.2418 -0.8349 23 6 4.2520 -1.8184 0.6024 24 6 3.4667 -0.7161 1.3147 25 1 3.6322 -0.8732 2.3805 26 6 1.9900 -0.7901 1.1032 27 1 -0.3633 0.4512 -0.9232 28 1 -0.3633 -1.0252 0.0709 29 1 -0.3633 0.5740 0.8525 30 1 1.7735 1.8473 0.9542 31 1 1.5387 1.9380 -0.8103 32 1 3.7267 0.7460 -1.1162 33 1 3.9070 2.3131 -0.2924 34 1 6.2408 0.0894 1.4035 35 1 5.9792 0.8651 -0.1882 36 1 7.4532 -1.4320 -0.3741 37 1 6.8000 -2.1950 1.0954 38 1 8.5235 -3.7289 -0.9223 39 1 7.7893 -4.3310 0.5833 40 1 10.1696 -6.9759 -0.3661 41 1 4.6178 -2.5432 1.3297 42 1 3.6158 -2.3129 -0.1315 43 1 1.4977 -0.4630 2.0191 44 1 1.7220 -1.8328 0.9320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931430222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:14 Heat of formation + Delta-G solvation = 24.494599 kcal Electronic energy + Delta-G solvation = -21936.525558 eV Core-core repulsion = 18888.095227 eV Total energy + Delta-G solvation = -3048.430330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37326 -37.64335 -36.01268 -33.92632 -32.95752 -32.10380 -31.00614 -28.39466 -26.89480 -26.04258 -23.92437 -22.99903 -22.17087 -21.56305 -20.82576 -18.82390 -16.69100 -16.44516 -16.12426 -15.66253 -15.41616 -15.07307 -14.70058 -14.52957 -13.91971 -13.35614 -13.29521 -13.01337 -12.88332 -12.64198 -12.55828 -12.36145 -12.19964 -11.93321 -11.74775 -11.71778 -11.30810 -11.17551 -11.05252 -10.89522 -10.75981 -10.61922 -10.47877 -10.45592 -10.22923 -10.12987 -9.49003 -9.17702 -8.43897 -8.39508 -8.11158 -6.07587 -4.10293 3.30069 3.38329 3.43494 3.74267 3.81704 3.91713 4.15229 4.42749 4.44054 4.49789 4.57945 4.95275 4.96752 4.98301 5.12077 5.23586 5.29615 5.30793 5.35411 5.41940 5.45818 5.53690 5.63684 5.65927 5.69075 5.71445 5.76687 5.84694 5.89490 5.99248 6.03655 6.08973 6.24764 6.38901 6.45601 6.53088 6.93938 7.01085 7.14353 7.25808 7.45148 7.56188 7.88313 8.26176 8.66809 8.94916 9.55146 11.03426 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026276 B = 0.003792 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.352209 B = 7381.949037 C = 7668.377114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.543 5.543 3 C 0.060 3.940 4 C -0.109 4.109 5 C -0.084 4.084 6 H 0.077 0.923 7 C 0.046 3.954 8 N -0.522 5.522 9 C 0.057 3.943 10 C 0.012 3.988 11 H 0.098 0.902 12 C 0.257 3.743 13 N -0.480 5.480 14 C 0.031 3.969 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.049 3.951 24 C -0.092 4.092 25 H 0.061 0.939 26 C 0.081 3.919 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.022 0.978 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.026 0.974 39 H 0.036 0.964 40 H 0.261 0.739 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.022 0.978 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.128 15.229 8.006 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.268 5.268 3 C -0.068 4.068 4 C -0.147 4.147 5 C -0.104 4.104 6 H 0.095 0.905 7 C -0.082 4.082 8 N -0.246 5.246 9 C -0.072 4.072 10 C -0.010 4.010 11 H 0.116 0.884 12 C -0.060 4.060 13 N -0.157 5.157 14 C -0.008 4.008 15 C -0.562 4.562 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.078 4.078 24 C -0.111 4.111 25 H 0.079 0.921 26 C -0.048 4.048 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.040 0.960 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.057 15.294 5.437 21.472 hybrid contribution -0.061 -0.877 1.697 1.912 sum -14.118 14.417 7.134 21.402 Atomic orbital electron populations 1.22331 0.87063 1.01870 1.00600 1.60927 1.07196 1.13412 1.45243 1.21981 0.96187 0.88842 0.99779 1.21607 0.93457 1.00158 0.99453 1.21680 0.94960 0.95751 0.97977 0.90482 1.23139 0.95666 0.91832 0.97560 1.63925 1.04746 1.02388 1.53577 1.22402 0.92194 0.93506 0.99106 1.19203 1.04057 0.95558 0.82191 0.88391 1.28814 0.91431 0.90954 0.94794 1.80971 1.10594 1.11017 1.13071 1.19180 0.90283 0.92971 0.98347 1.21190 1.02937 0.97556 1.34525 0.92432 1.24951 0.95021 0.98824 0.95189 1.69949 1.06973 1.34020 1.42177 0.86545 0.78452 0.83905 0.79252 1.19635 1.20971 1.20887 1.22756 0.92715 0.95498 0.96874 1.20623 0.94298 0.95831 1.00376 0.92065 1.20834 0.93912 0.98776 0.91237 0.91325 0.91417 0.95970 0.95365 0.90868 0.89531 0.91852 0.93949 0.90124 0.90292 0.92880 0.95585 0.94563 0.92893 0.92809 0.90003 0.95971 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.54 60.07 0.57 0.82 16 2 N -0.54 -5.75 4.88 -246.81 -1.20 -6.95 16 3 C 0.06 0.57 5.49 -4.03 -0.02 0.55 16 4 C -0.11 -1.11 5.22 -26.80 -0.14 -1.25 16 5 C -0.08 -0.84 3.41 -89.90 -0.31 -1.15 16 6 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 7 C 0.05 0.52 5.94 -2.20 -0.01 0.51 16 8 N -0.52 -7.28 4.92 -231.87 -1.14 -8.42 16 9 C 0.06 0.87 3.97 -3.83 -0.02 0.86 16 10 C 0.01 0.23 2.16 -93.41 -0.20 0.02 16 11 H 0.10 1.77 7.14 -51.93 -0.37 1.40 16 12 C 0.26 5.56 13.67 -20.76 -0.28 5.28 16 13 N -0.48 -11.25 18.54 42.15 0.78 -10.47 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.52 -14.12 8.60 -34.44 -0.30 -14.41 16 16 H 0.06 1.56 7.59 -52.48 -0.40 1.16 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 C 0.05 0.62 5.26 -3.45 -0.02 0.60 16 24 C -0.09 -0.96 2.55 -92.85 -0.24 -1.20 16 25 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 26 C 0.08 0.82 4.93 -6.45 -0.03 0.78 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 32 H 0.09 1.12 7.94 -51.93 -0.41 0.71 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.46 7.89 -51.92 -0.41 0.05 16 35 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 36 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 37 H 0.05 0.75 7.96 -51.93 -0.41 0.34 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.05 0.66 7.46 -51.93 -0.39 0.27 16 42 H 0.08 1.15 7.71 -51.93 -0.40 0.74 16 43 H 0.02 0.21 8.03 -51.93 -0.42 -0.21 16 44 H 0.08 0.78 7.72 -51.93 -0.40 0.37 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -30.49 348.04 -9.61 -40.10 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -7.79 Total: -4.63 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.21 Total: -6.36 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.83 Total: -50.82 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.49 -9.61 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931430222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.592 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds