Wall clock time and date at job start Mon Mar 30 2020 02:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.44966 * 110.99712 * 2 1 4 4 C 1.56400 * 109.63710 * 217.28327 * 3 2 1 5 5 C 1.52856 * 109.32858 * 330.69556 * 4 3 2 6 6 H 1.09002 * 107.57416 * 187.27552 * 5 4 3 7 7 C 1.51886 * 113.48729 * 68.40963 * 5 4 3 8 8 C 1.54504 * 104.48269 * 230.43294 * 7 5 4 9 9 C 1.54855 * 102.54181 * 25.45001 * 8 7 5 10 10 H 1.08999 * 113.20580 * 199.58217 * 9 8 7 11 11 C 1.44438 * 111.00678 * 126.40627 * 2 1 3 12 12 N 1.48271 * 110.41332 * 304.25996 * 5 4 3 13 13 C 1.46906 * 111.00232 * 227.62539 * 12 5 4 14 14 C 1.52998 * 109.46932 * 174.85444 * 13 12 5 15 15 H 1.08994 * 109.47283 * 55.00436 * 14 13 12 16 16 C 1.47200 * 109.46969 * 294.99750 * 14 13 12 17 17 N 5.71240 * 140.17447 * 72.12913 * 2 1 3 18 18 C 1.53004 * 109.46892 * 175.00171 * 14 13 12 19 19 C 1.50697 * 109.47086 * 184.99919 * 18 14 13 20 20 H 1.07992 * 120.00160 * 0.02562 * 19 18 14 21 21 C 1.37878 * 119.99607 * 179.97438 * 19 18 14 22 22 N 1.31513 * 120.00555 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46911 * 60.00047 * 23 21 19 25 25 H 1.48501 * 109.47463 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47185 * 300.00111 * 23 21 19 27 27 H 1.08999 * 109.47284 * 63.95661 * 1 2 3 28 28 H 1.09004 * 109.46876 * 183.95609 * 1 2 3 29 29 H 1.09001 * 109.47172 * 303.95149 * 1 2 3 30 30 H 1.09001 * 109.44338 * 97.23521 * 3 2 1 31 31 H 1.08999 * 109.44079 * 337.33552 * 3 2 1 32 32 H 1.08993 * 109.49629 * 210.73777 * 4 3 2 33 33 H 1.09003 * 109.52034 * 90.66029 * 4 3 2 34 34 H 1.08997 * 110.43433 * 349.18157 * 7 5 4 35 35 H 1.08997 * 110.43358 * 111.68149 * 7 5 4 36 36 H 1.09005 * 110.79002 * 267.18830 * 8 7 5 37 37 H 1.08993 * 110.79555 * 143.72011 * 8 7 5 38 38 H 1.09002 * 107.92887 * 28.26480 * 11 2 1 39 39 H 1.08995 * 109.35808 * 270.65779 * 11 2 1 40 40 H 1.08999 * 109.47030 * 294.85878 * 13 12 5 41 41 H 1.09001 * 109.46700 * 54.85160 * 13 12 5 42 42 H 1.08998 * 109.47299 * 305.00247 * 18 14 13 43 43 H 1.09002 * 109.47003 * 64.99910 * 18 14 13 44 44 H 0.97000 * 120.00636 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9884 1.3534 0.0000 4 6 3.2709 1.4241 -0.8923 5 6 3.9746 0.0673 -0.8753 6 1 4.9260 0.1834 -1.3944 7 6 3.1961 -1.0273 -1.5844 8 6 3.1573 -2.1927 -0.5707 9 6 3.3092 -1.4629 0.7866 10 1 3.6402 -2.1184 1.5921 11 6 1.9867 -0.8003 1.0852 12 7 4.2749 -0.3421 0.5178 13 6 5.6642 -0.8029 0.6433 14 6 5.9741 -1.0940 2.1130 15 1 5.2443 -1.8024 2.5048 16 6 5.9075 0.1572 2.8856 17 7 5.8561 1.1227 3.4820 18 6 7.3780 -1.6912 2.2295 19 6 7.6366 -2.0913 3.6592 20 1 6.8757 -1.9357 4.4095 21 6 8.8443 -2.6571 4.0090 22 7 9.7704 -2.8481 3.0949 23 14 9.1652 -3.1525 5.7813 24 1 8.1606 -4.1618 6.2028 25 1 10.5272 -3.7334 5.8941 26 1 9.0625 -1.9567 6.6558 27 1 -0.3634 0.4512 -0.9233 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3633 0.5739 0.8525 30 1 2.2393 1.6458 1.0197 31 1 1.2329 2.0320 -0.3961 32 1 3.9438 2.1877 -0.5022 33 1 2.9897 1.6751 -1.9151 34 1 2.1857 -0.6884 -1.8133 35 1 3.7117 -1.3320 -2.4951 36 1 3.9887 -2.8778 -0.7369 37 1 2.2044 -2.7191 -0.6226 38 1 1.2543 -1.5758 1.3094 39 1 2.1052 -0.1754 1.9703 40 1 5.8001 -1.7112 0.0564 41 1 6.3382 -0.0289 0.2761 42 1 7.4541 -2.5685 1.5872 43 1 8.1150 -0.9499 1.9207 44 1 10.6202 -3.2458 3.3411 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931728137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:00 Heat of formation + Delta-G solvation = 43.333828 kcal Electronic energy + Delta-G solvation = -22659.695825 eV Core-core repulsion = 19612.082425 eV Total energy + Delta-G solvation = -3047.613400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.58587 -37.03801 -35.75686 -33.76060 -32.81684 -32.32092 -30.11366 -28.78940 -26.60847 -25.63986 -24.97231 -22.90931 -21.80634 -21.21857 -19.81001 -19.18333 -16.86421 -16.62106 -16.10782 -15.50594 -15.44440 -14.65842 -14.42277 -14.10559 -13.74513 -13.51082 -13.32291 -13.04452 -12.81395 -12.51091 -12.35641 -12.01965 -11.86460 -11.72741 -11.54170 -11.31027 -11.21376 -11.08544 -11.02222 -10.78434 -10.67630 -10.56220 -10.52772 -10.50770 -10.17879 -10.07910 -9.47751 -9.19590 -8.43798 -8.24147 -8.05497 -6.07797 -4.10957 3.31909 3.36199 3.39952 3.77417 3.87829 3.90606 4.08913 4.42569 4.76793 4.82898 4.96503 5.06528 5.10919 5.16766 5.22649 5.30184 5.31376 5.37495 5.46340 5.63947 5.68111 5.68489 5.72092 5.75276 5.81636 5.88576 5.96014 6.02600 6.07728 6.14550 6.20783 6.24360 6.33494 6.45069 6.54610 6.64580 7.04154 7.19153 7.20463 7.35934 7.45338 7.55719 7.87256 8.25395 8.63207 8.93585 9.54319 11.03076 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.004326 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.307998 B = 6470.542195 C = 6572.166714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.542 5.542 3 C 0.069 3.931 4 C -0.093 4.093 5 C 0.076 3.924 6 H 0.050 0.950 7 C -0.121 4.121 8 C -0.132 4.132 9 C 0.057 3.943 10 H 0.104 0.896 11 C 0.077 3.923 12 N -0.504 5.504 13 C 0.052 3.948 14 C 0.013 3.987 15 H 0.097 0.903 16 C 0.258 3.742 17 N -0.483 5.483 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.056 0.944 21 C 0.063 3.937 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.021 0.979 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.025 0.975 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.186 2.344 -11.206 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.265 5.265 3 C -0.059 4.059 4 C -0.132 4.132 5 C -0.033 4.033 6 H 0.068 0.932 7 C -0.159 4.159 8 C -0.171 4.171 9 C -0.052 4.052 10 H 0.121 0.879 11 C -0.052 4.052 12 N -0.227 5.227 13 C -0.077 4.077 14 C -0.009 4.009 15 H 0.115 0.885 16 C -0.059 4.059 17 N -0.160 5.160 18 C -0.007 4.007 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.531 5.531 23 Si 0.718 3.282 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.972 3.999 -10.346 20.275 hybrid contribution 0.336 -1.000 0.985 1.444 sum -16.635 2.999 -9.362 19.323 Atomic orbital electron populations 1.22412 0.87389 1.01533 1.00390 1.59777 1.06452 1.13688 1.46602 1.22275 0.96097 0.88014 0.99500 1.22070 0.96007 0.96408 0.98739 1.21823 0.97708 0.95127 0.88670 0.93182 1.22262 1.02476 0.94497 0.96705 1.22767 1.01357 0.97723 0.95271 1.23106 0.92407 0.91942 0.97748 0.87860 1.21124 0.95786 0.96668 0.91590 1.65864 1.03033 1.31504 1.22329 1.22393 0.89399 1.00170 0.95771 1.19215 1.03415 0.87785 0.90479 0.88512 1.28873 0.90808 0.93814 0.92374 1.80970 1.11220 1.12899 1.10882 1.19162 0.87140 0.96281 0.98077 1.21100 1.00462 1.40994 0.93847 0.92624 1.24941 0.96056 0.95569 0.97311 1.69927 1.06066 1.43886 1.33177 0.86668 0.77365 0.78935 0.85192 1.20072 1.21190 1.20236 0.91682 0.91687 0.96005 0.93647 0.92345 0.91812 0.92069 0.88415 0.93377 0.92176 0.91274 0.91981 0.94168 0.92759 0.90535 0.94513 0.95655 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.25 60.06 0.56 0.81 16 2 N -0.54 -5.57 1.49 -245.63 -0.37 -5.94 16 3 C 0.07 0.76 5.73 -3.04 -0.02 0.74 16 4 C -0.09 -1.05 6.02 -24.98 -0.15 -1.20 16 5 C 0.08 0.92 2.49 -67.59 -0.17 0.76 16 6 H 0.05 0.63 7.39 -51.93 -0.38 0.25 16 7 C -0.12 -1.31 5.81 -26.51 -0.15 -1.46 16 8 C -0.13 -1.45 6.04 -24.96 -0.15 -1.60 16 9 C 0.06 0.70 3.50 -65.84 -0.23 0.47 16 10 H 0.10 1.31 6.39 -51.93 -0.33 0.98 16 11 C 0.08 0.88 4.52 -6.20 -0.03 0.85 16 12 N -0.50 -7.01 4.25 -215.62 -0.92 -7.93 16 13 C 0.05 0.81 3.94 -3.82 -0.02 0.79 16 14 C 0.01 0.24 2.22 -93.41 -0.21 0.04 16 15 H 0.10 1.72 6.41 -51.93 -0.33 1.38 16 16 C 0.26 5.52 13.67 -20.76 -0.28 5.23 16 17 N -0.48 -11.17 18.54 42.16 0.78 -10.39 16 18 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 19 C -0.53 -14.11 8.60 -34.44 -0.30 -14.40 16 20 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 23 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 28 H 0.06 0.49 7.70 -51.93 -0.40 0.09 16 29 H 0.02 0.18 8.13 -51.93 -0.42 -0.24 16 30 H 0.05 0.60 7.38 -51.93 -0.38 0.21 16 31 H 0.06 0.55 7.64 -51.93 -0.40 0.16 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.10 1.05 6.15 -51.93 -0.32 0.73 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 37 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 38 H 0.06 0.62 7.37 -51.93 -0.38 0.24 16 39 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 40 H 0.05 0.80 7.52 -51.93 -0.39 0.41 16 41 H 0.08 1.23 7.95 -51.93 -0.41 0.82 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -29.66 338.18 -8.49 -38.15 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -7.44 Total: -3.74 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.37 Total: -6.70 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.24 Total: -49.21 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.66 -8.49 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931728137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.484 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds