Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.44966 * 110.99712 * 2 1 4 4 C 1.56400 * 109.63710 * 217.28327 * 3 2 1 5 5 C 1.52856 * 109.32858 * 330.69556 * 4 3 2 6 6 H 1.09002 * 107.57416 * 187.27552 * 5 4 3 7 7 C 1.51886 * 113.48729 * 68.40963 * 5 4 3 8 8 C 1.54504 * 104.48269 * 230.43294 * 7 5 4 9 9 C 1.54855 * 102.54181 * 25.45001 * 8 7 5 10 10 H 1.08999 * 113.20580 * 199.58217 * 9 8 7 11 11 C 1.44438 * 111.00678 * 126.40627 * 2 1 3 12 12 N 1.48271 * 110.41332 * 304.25996 * 5 4 3 13 13 C 1.46906 * 111.00232 * 227.62539 * 12 5 4 14 14 C 1.52998 * 109.46932 * 174.85444 * 13 12 5 15 15 H 1.08994 * 109.47283 * 55.00436 * 14 13 12 16 16 C 1.47200 * 109.46969 * 294.99750 * 14 13 12 17 17 N 5.71240 * 140.17447 * 72.12913 * 2 1 3 18 18 C 1.53004 * 109.46892 * 175.00171 * 14 13 12 19 19 C 1.50697 * 109.47086 * 184.99919 * 18 14 13 20 20 H 1.07992 * 120.00160 * 0.02562 * 19 18 14 21 21 C 1.37878 * 119.99607 * 179.97438 * 19 18 14 22 22 N 1.31513 * 120.00555 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46911 * 60.00047 * 23 21 19 25 25 H 1.48501 * 109.47463 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47185 * 300.00111 * 23 21 19 27 27 H 1.08999 * 109.47284 * 63.95661 * 1 2 3 28 28 H 1.09004 * 109.46876 * 183.95609 * 1 2 3 29 29 H 1.09001 * 109.47172 * 303.95149 * 1 2 3 30 30 H 1.09001 * 109.44338 * 97.23521 * 3 2 1 31 31 H 1.08999 * 109.44079 * 337.33552 * 3 2 1 32 32 H 1.08993 * 109.49629 * 210.73777 * 4 3 2 33 33 H 1.09003 * 109.52034 * 90.66029 * 4 3 2 34 34 H 1.08997 * 110.43433 * 349.18157 * 7 5 4 35 35 H 1.08997 * 110.43358 * 111.68149 * 7 5 4 36 36 H 1.09005 * 110.79002 * 267.18830 * 8 7 5 37 37 H 1.08993 * 110.79555 * 143.72011 * 8 7 5 38 38 H 1.09002 * 107.92887 * 28.26480 * 11 2 1 39 39 H 1.08995 * 109.35808 * 270.65779 * 11 2 1 40 40 H 1.08999 * 109.47030 * 294.85878 * 13 12 5 41 41 H 1.09001 * 109.46700 * 54.85160 * 13 12 5 42 42 H 1.08998 * 109.47299 * 305.00247 * 18 14 13 43 43 H 1.09002 * 109.47003 * 64.99910 * 18 14 13 44 44 H 0.97000 * 120.00636 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9884 1.3534 0.0000 4 6 3.2709 1.4241 -0.8923 5 6 3.9746 0.0673 -0.8753 6 1 4.9260 0.1834 -1.3944 7 6 3.1961 -1.0273 -1.5844 8 6 3.1573 -2.1927 -0.5707 9 6 3.3092 -1.4629 0.7866 10 1 3.6402 -2.1184 1.5921 11 6 1.9867 -0.8003 1.0852 12 7 4.2749 -0.3421 0.5178 13 6 5.6642 -0.8029 0.6433 14 6 5.9741 -1.0940 2.1130 15 1 5.2443 -1.8024 2.5048 16 6 5.9075 0.1572 2.8856 17 7 5.8561 1.1227 3.4820 18 6 7.3780 -1.6912 2.2295 19 6 7.6366 -2.0913 3.6592 20 1 6.8757 -1.9357 4.4095 21 6 8.8443 -2.6571 4.0090 22 7 9.7704 -2.8481 3.0949 23 14 9.1652 -3.1525 5.7813 24 1 8.1606 -4.1618 6.2028 25 1 10.5272 -3.7334 5.8941 26 1 9.0625 -1.9567 6.6558 27 1 -0.3634 0.4512 -0.9233 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3633 0.5739 0.8525 30 1 2.2393 1.6458 1.0197 31 1 1.2329 2.0320 -0.3961 32 1 3.9438 2.1877 -0.5022 33 1 2.9897 1.6751 -1.9151 34 1 2.1857 -0.6884 -1.8133 35 1 3.7117 -1.3320 -2.4951 36 1 3.9887 -2.8778 -0.7369 37 1 2.2044 -2.7191 -0.6226 38 1 1.2543 -1.5758 1.3094 39 1 2.1052 -0.1754 1.9703 40 1 5.8001 -1.7112 0.0564 41 1 6.3382 -0.0289 0.2761 42 1 7.4541 -2.5685 1.5872 43 1 8.1150 -0.9499 1.9207 44 1 10.6202 -3.2458 3.3411 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931728137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = 27.197912 kcal Electronic energy + Delta-G solvation = -22660.395531 eV Core-core repulsion = 19612.082425 eV Total energy + Delta-G solvation = -3048.313106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55031 -38.43268 -36.99972 -35.58013 -34.12820 -33.65871 -31.49243 -29.65591 -28.15810 -26.74975 -25.81509 -24.39580 -23.52586 -22.14259 -20.79757 -20.16105 -18.57187 -18.12228 -17.50067 -16.55672 -16.49828 -16.31265 -15.41761 -15.35651 -15.04092 -14.67134 -14.43518 -14.21720 -14.15863 -13.87573 -13.69691 -13.48021 -13.24682 -13.05007 -12.86839 -12.73532 -12.58383 -12.48510 -12.33314 -12.16377 -11.97875 -11.87571 -11.59939 -11.55371 -11.41378 -11.35178 -11.19601 -10.92904 -10.55344 -9.31272 -8.89839 -8.19555 -6.28260 1.40537 1.42386 1.49477 2.04574 2.12453 2.41213 2.99864 3.09950 3.15778 3.34720 3.80349 3.92267 4.12787 4.22712 4.29720 4.32045 4.34242 4.36764 4.56716 4.62010 4.64371 4.68238 4.73710 4.84198 4.86392 4.93722 4.96845 5.03387 5.06698 5.11687 5.15358 5.25283 5.29841 5.38446 5.42457 5.45353 5.60139 5.75237 5.78421 6.08855 6.14049 6.24987 6.36445 6.38996 6.81867 6.91795 7.40304 8.91262 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.004326 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.307998 B = 6470.542195 C = 6572.166714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.540 5.540 3 C 0.074 3.926 4 C -0.092 4.092 5 C 0.074 3.926 6 H 0.043 0.957 7 C -0.112 4.112 8 C -0.125 4.125 9 C 0.051 3.949 10 H 0.098 0.902 11 C 0.082 3.918 12 N -0.518 5.518 13 C 0.065 3.935 14 C 0.026 3.974 15 H 0.113 0.887 16 C 0.268 3.732 17 N -0.515 5.515 18 C 0.040 3.960 19 C -0.540 4.540 20 H 0.053 0.947 21 C 0.013 3.987 22 N -0.923 5.923 23 Si 0.948 3.052 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.282 1.282 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.014 0.986 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.034 0.966 43 H -0.001 1.001 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.988 1.530 -11.957 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.263 5.263 3 C -0.055 4.055 4 C -0.131 4.131 5 C -0.035 4.035 6 H 0.061 0.939 7 C -0.151 4.151 8 C -0.164 4.164 9 C -0.057 4.057 10 H 0.116 0.884 11 C -0.047 4.047 12 N -0.242 5.242 13 C -0.065 4.065 14 C 0.004 3.996 15 H 0.131 0.869 16 C -0.048 4.048 17 N -0.193 5.193 18 C 0.001 3.999 19 C -0.578 4.578 20 H 0.071 0.929 21 C -0.186 4.186 22 N -0.563 5.563 23 Si 0.774 3.226 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.208 1.208 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.033 0.967 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.017 0.983 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.796 3.182 -11.103 22.061 hybrid contribution 0.874 -0.717 1.204 1.652 sum -17.922 2.466 -9.899 20.622 Atomic orbital electron populations 1.22487 0.85785 1.02427 1.00973 1.59792 1.07799 1.12963 1.45756 1.22217 0.96503 0.88879 0.97896 1.22062 0.95786 0.95389 0.99836 1.21921 0.97850 0.96100 0.87623 0.93901 1.22206 1.02557 0.93723 0.96612 1.22718 1.02001 0.97563 0.94108 1.23194 0.92326 0.91718 0.98507 0.88439 1.21055 0.95872 0.96808 0.90969 1.65863 1.02093 1.32360 1.23856 1.22172 0.90684 1.00479 0.93166 1.19149 1.01131 0.86755 0.92588 0.86898 1.29349 0.89879 0.93910 0.91710 1.80962 1.12193 1.14066 1.12092 1.18974 0.89059 0.95522 0.96342 1.21493 1.00424 1.40522 0.95340 0.92889 1.25702 0.96068 0.95802 1.01011 1.70025 1.06485 1.44843 1.34952 0.85755 0.77707 0.78579 0.80584 1.18641 1.20625 1.20759 0.90292 0.90535 0.96329 0.96471 0.90522 0.93502 0.90053 0.87784 0.92737 0.92555 0.89789 0.90184 0.96749 0.91571 0.91414 0.94755 0.98308 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.25 127.69 1.18 1.60 16 2 N -0.54 -9.94 1.49 -931.04 -1.39 -11.32 16 3 C 0.07 1.52 5.73 87.85 0.50 2.02 16 4 C -0.09 -1.96 6.02 31.73 0.19 -1.76 16 5 C 0.07 1.70 2.49 44.24 0.11 1.81 16 6 H 0.04 1.04 7.39 -2.39 -0.02 1.02 16 7 C -0.11 -2.15 5.81 30.74 0.18 -1.97 16 8 C -0.12 -2.43 6.04 31.74 0.19 -2.24 16 9 C 0.05 1.18 3.50 44.19 0.15 1.33 16 10 H 0.10 2.35 6.39 -2.39 -0.02 2.33 16 11 C 0.08 1.74 4.52 86.08 0.39 2.13 16 12 N -0.52 -14.06 4.25 -836.10 -3.55 -17.61 16 13 C 0.06 1.99 3.94 86.30 0.34 2.33 16 14 C 0.03 0.96 2.22 -12.60 -0.03 0.93 16 15 H 0.11 3.92 6.41 -2.39 -0.02 3.91 16 16 C 0.27 11.54 13.67 89.44 1.22 12.76 16 17 N -0.52 -24.18 18.54 20.01 0.37 -23.81 16 18 C 0.04 1.89 4.42 29.85 0.13 2.02 16 19 C -0.54 -29.03 8.60 25.60 0.22 -28.81 16 20 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 21 C 0.01 0.73 5.46 84.66 0.46 1.19 16 22 N -0.92 -53.52 13.29 21.45 0.28 -53.23 16 23 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 24 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 27 H 0.08 0.88 8.13 -2.39 -0.02 0.87 16 28 H 0.08 0.89 7.70 -2.39 -0.02 0.87 16 29 H 0.02 0.27 8.13 -2.39 -0.02 0.25 16 30 H 0.02 0.45 7.38 -2.39 -0.02 0.43 16 31 H 0.08 1.29 7.64 -2.39 -0.02 1.27 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.89 6.15 -2.39 -0.01 1.88 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.15 7.84 -2.38 -0.02 1.13 16 37 H 0.08 1.41 8.03 -2.39 -0.02 1.39 16 38 H 0.08 1.41 7.37 -2.39 -0.02 1.39 16 39 H 0.01 0.38 7.45 -2.39 -0.02 0.36 16 40 H 0.07 1.88 7.52 -2.39 -0.02 1.86 16 41 H 0.07 2.19 7.95 -2.39 -0.02 2.17 16 42 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -63.18 338.18 3.95 -59.23 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.96 Total: 7.64 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.25 Total: -6.66 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -4.28 Total: -105.97 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -63.18 3.95 -59.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931728137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.427 kcal (2) G-P(sol) polarization free energy of solvation -63.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds