Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46909 * 2 1 4 4 C 1.53000 * 109.46933 * 240.00381 * 2 1 3 5 5 C 1.50698 * 109.47174 * 64.74688 * 4 2 1 6 6 H 1.08004 * 120.00147 * 0.08258 * 5 4 2 7 7 C 1.37877 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99855 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00357 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47295 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.46923 * 300.00268 * 9 7 5 12 12 H 1.48502 * 109.47068 * 60.00124 * 9 7 5 13 13 N 1.46898 * 109.47250 * 120.00251 * 2 1 3 14 14 C 1.46847 * 110.99602 * 183.64797 * 13 2 1 15 15 C 1.53044 * 109.51987 * 185.83751 * 14 13 2 16 16 C 1.53117 * 109.28059 * 300.82073 * 15 14 13 17 17 C 1.53124 * 109.16110 * 57.65211 * 16 15 14 18 18 H 1.08999 * 109.50051 * 62.32508 * 17 16 15 19 19 C 1.50693 * 109.50335 * 182.40449 * 17 16 15 20 20 C 1.39872 * 125.89748 * 35.00313 * 19 17 16 21 21 C 1.35317 * 107.91670 * 179.97438 * 20 19 17 22 22 N 1.34947 * 107.74910 * 0.02562 * 21 20 19 23 23 C 1.46497 * 126.03573 * 180.02562 * 22 21 20 24 24 N 1.30839 * 125.90079 * 214.69037 * 19 17 16 25 25 C 1.46844 * 110.99941 * 307.85402 * 13 2 1 26 26 H 1.08997 * 109.46909 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46848 * 299.99932 * 1 2 3 28 28 H 1.08994 * 109.47463 * 59.99752 * 1 2 3 29 29 H 1.09005 * 109.47118 * 304.74885 * 4 2 1 30 30 H 1.08999 * 109.47185 * 184.75126 * 4 2 1 31 31 H 0.96997 * 120.00134 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.46352 * 305.85319 * 14 13 2 33 33 H 1.08997 * 109.46295 * 65.83437 * 14 13 2 34 34 H 1.09005 * 109.49849 * 60.76290 * 15 14 13 35 35 H 1.09000 * 109.50439 * 180.87931 * 15 14 13 36 36 H 1.08997 * 109.52258 * 177.55660 * 16 15 14 37 37 H 1.09005 * 109.51822 * 297.68654 * 16 15 14 38 38 H 1.07994 * 126.04117 * 359.97438 * 20 19 17 39 39 H 1.08004 * 126.12394 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.47188 * 90.00039 * 23 22 21 41 41 H 1.09004 * 109.47209 * 209.99865 * 23 22 21 42 42 H 1.08996 * 109.47430 * 329.99883 * 23 22 21 43 43 H 1.08998 * 109.46783 * 294.17867 * 25 13 2 44 44 H 1.09008 * 109.46176 * 54.14720 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6360 0.0539 -2.4769 6 1 1.0730 0.9701 -2.3761 7 6 1.9860 -0.4059 -3.7287 8 7 2.6720 -1.5212 -3.8515 9 14 1.4858 0.5552 -5.2504 10 1 1.9796 -0.1455 -6.4630 11 1 0.0053 0.6576 -5.3067 12 1 2.0743 1.9174 -5.1911 13 7 2.0197 -0.6925 1.1994 14 6 3.4851 -0.6370 1.2776 15 6 3.9670 -1.4883 2.4546 16 6 3.3475 -0.9569 3.7501 17 6 1.8217 -0.9800 3.6240 18 1 1.4830 -2.0076 3.4920 19 6 1.2049 -0.4034 4.8721 20 6 1.7289 0.6434 5.6376 21 6 0.8849 0.8661 6.6716 22 7 -0.1366 -0.0092 6.5646 23 6 -1.2781 -0.1172 7.4765 24 7 0.0838 -0.7916 5.4238 25 6 1.4020 -0.1434 2.4132 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6088 -1.7214 -1.2929 30 1 3.1267 -0.7955 -1.2078 31 1 2.9180 -1.8449 -4.7321 32 1 3.9130 -1.0216 0.3519 33 1 3.8021 0.3957 1.4228 34 1 3.6621 -2.5239 2.3034 35 1 5.0536 -1.4344 2.5219 36 1 3.6536 -1.5867 4.5853 37 1 3.6843 0.0655 3.9221 38 1 2.6452 1.1793 5.4386 39 1 1.0070 1.6109 7.4442 40 1 -2.0817 0.5334 7.1313 41 1 -1.6296 -1.1488 7.4980 42 1 -0.9724 0.1834 8.4786 43 1 1.7288 0.8870 2.5528 44 1 0.3169 -0.1696 2.3121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932137016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = 49.025608 kcal Electronic energy + Delta-G solvation = -21810.235075 eV Core-core repulsion = 18762.868489 eV Total energy + Delta-G solvation = -3047.366586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.15946 -40.17555 -36.73351 -34.81486 -34.06061 -31.88797 -31.48543 -30.93683 -28.80412 -27.19658 -25.94650 -24.70184 -23.67036 -22.21543 -21.33139 -20.53147 -20.04913 -18.66566 -17.84914 -16.79709 -16.58577 -16.32293 -15.85344 -15.73191 -15.22988 -14.70227 -14.64289 -14.53726 -14.33759 -14.10205 -13.69636 -13.63681 -13.46971 -13.23082 -13.07076 -12.86487 -12.64924 -12.54905 -12.23851 -12.21330 -11.97397 -11.74444 -11.54015 -11.40340 -11.28197 -11.07926 -10.90958 -10.47766 -10.15026 -9.43457 -9.10497 -8.15820 -6.25473 0.99634 1.40818 1.43881 1.51503 1.72351 1.85338 2.42463 3.05284 3.17343 3.58629 3.84073 3.97655 4.07896 4.10461 4.25789 4.31559 4.32518 4.42920 4.45938 4.54148 4.61362 4.68061 4.70641 4.73361 4.77444 4.83800 4.88975 5.02017 5.05499 5.09048 5.13690 5.24946 5.27471 5.29507 5.40643 5.49500 5.54911 5.70170 5.76034 5.82222 6.17552 6.23828 6.39194 6.43211 6.82454 6.90248 7.42244 8.96217 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030283 B = 0.003562 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.375213 B = 7859.847032 C = 8441.487545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.096 3.904 3 H 0.020 0.980 4 C 0.046 3.954 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.932 5.932 9 Si 0.962 3.038 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.267 1.267 13 N -0.543 5.543 14 C 0.052 3.948 15 C -0.108 4.108 16 C -0.096 4.096 17 C 0.002 3.998 18 H 0.071 0.929 19 C 0.074 3.926 20 C -0.286 4.286 21 C 0.062 3.938 22 N -0.385 5.385 23 C 0.094 3.906 24 N -0.341 5.341 25 C 0.074 3.926 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.055 0.945 29 H -0.011 1.011 30 H -0.004 1.004 31 H 0.262 0.738 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.158 0.842 39 H 0.216 0.784 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.031 0.969 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 5.712 24.968 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.011 4.011 3 H 0.038 0.962 4 C 0.008 3.992 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.786 3.214 10 H -0.209 1.209 11 H -0.193 1.193 12 H -0.192 1.192 13 N -0.268 5.268 14 C -0.076 4.076 15 C -0.146 4.146 16 C -0.134 4.134 17 C -0.019 4.019 18 H 0.090 0.910 19 C -0.091 4.091 20 C -0.315 4.315 21 C -0.084 4.084 22 N -0.167 5.167 23 C -0.046 4.046 24 N -0.164 5.164 25 C -0.055 4.055 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.008 0.992 30 H 0.014 0.986 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.176 0.824 39 H 0.232 0.768 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.139 0.861 43 H 0.049 0.951 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.681 4.295 24.878 25.513 hybrid contribution 0.633 1.447 -1.173 1.967 sum -3.048 5.742 23.705 24.580 Atomic orbital electron populations 1.21723 0.94403 1.01269 1.00850 1.21523 0.95603 0.94206 0.89783 0.96168 1.18937 0.94623 0.94468 0.91153 1.21572 1.34840 1.08781 0.92081 0.92180 1.25919 0.95156 0.96041 1.02517 1.70107 1.39919 1.22856 1.24354 0.85554 0.78920 0.78751 0.78133 1.20941 1.19265 1.19214 1.61912 1.06708 1.56430 1.01788 1.22141 0.87519 0.98474 0.99478 1.21560 1.00693 0.99308 0.93006 1.21515 0.92027 1.02345 0.97510 1.19438 0.95876 0.98744 0.87827 0.91020 1.22283 0.92982 0.96717 0.97162 1.21653 1.05647 1.04533 0.99634 1.23172 0.88372 0.95899 1.00958 1.48886 1.20306 1.26843 1.20656 1.22167 0.85710 1.04682 0.92062 1.77281 1.19437 1.19653 1.00016 1.21984 0.99183 0.95539 0.88758 0.93542 0.92246 0.92567 0.99247 0.98558 0.92891 0.92452 0.95146 0.92043 0.89317 0.90388 0.90655 0.82405 0.76771 0.89993 0.89773 0.86113 0.95104 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.51 71.98 0.61 -4.50 16 2 C 0.10 4.30 2.10 44.92 0.09 4.39 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.05 2.50 4.45 29.85 0.13 2.63 16 5 C -0.53 -30.89 8.40 25.60 0.22 -30.67 16 6 H 0.06 3.32 7.04 -2.91 -0.02 3.30 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 9 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 N -0.54 -21.06 4.52 -871.10 -3.94 -25.00 16 14 C 0.05 1.83 5.28 86.33 0.46 2.29 16 15 C -0.11 -2.95 6.09 30.65 0.19 -2.77 16 16 C -0.10 -2.30 4.92 30.67 0.15 -2.15 16 17 C 0.00 0.06 2.81 -11.49 -0.03 0.02 16 18 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 19 C 0.07 2.03 6.13 43.10 0.26 2.29 16 20 C -0.29 -6.09 9.97 21.99 0.22 -5.87 16 21 C 0.06 1.03 11.49 83.54 0.96 1.99 16 22 N -0.38 -7.75 4.01 -369.56 -1.48 -9.24 16 23 C 0.09 0.97 11.47 127.77 1.47 2.44 16 24 N -0.34 -9.83 12.58 -47.39 -0.60 -10.43 16 25 C 0.07 2.44 4.31 86.33 0.37 2.81 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 2.09 6.19 -2.39 -0.01 2.08 16 28 H 0.06 2.37 6.93 -2.39 -0.02 2.36 16 29 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 30 H 0.00 -0.22 6.15 -2.39 -0.01 -0.24 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.06 2.38 6.04 -2.39 -0.01 2.36 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.63 7.19 -2.38 -0.02 1.61 16 38 H 0.16 2.81 7.37 -2.91 -0.02 2.79 16 39 H 0.22 1.39 8.06 -2.91 -0.02 1.36 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 2.33 5.84 -2.38 -0.01 2.32 16 Total: -1.00 -73.18 343.48 2.81 -70.37 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.96 Total: 11.36 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 5.56 Total: -26.56 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -5.74 Total: -102.24 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.18 2.81 -70.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932137016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.398 kcal (2) G-P(sol) polarization free energy of solvation -73.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds