Wall clock time and date at job start Mon Mar 30 2020 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47262 * 2 1 4 4 C 1.53000 * 109.47508 * 239.99797 * 2 1 3 5 5 C 1.50699 * 109.47259 * 175.99617 * 4 2 1 6 6 H 1.07993 * 120.00262 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99615 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00293 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99701 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47089 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46902 * 119.99831 * 9 7 5 12 12 H 1.48496 * 109.47059 * 240.00255 * 9 7 5 13 13 N 1.46904 * 109.46968 * 119.99839 * 2 1 3 14 14 C 1.46851 * 111.00141 * 53.60495 * 13 2 1 15 15 C 1.53037 * 109.52229 * 174.16093 * 14 13 2 16 16 C 1.53113 * 109.27951 * 59.17482 * 15 14 13 17 17 C 1.53117 * 109.16365 * 302.34295 * 16 15 14 18 18 H 1.08993 * 109.50495 * 297.71495 * 17 16 15 19 19 C 1.50700 * 109.53528 * 177.61206 * 17 16 15 20 20 C 1.39870 * 125.90338 * 324.81916 * 19 17 16 21 21 C 1.35312 * 107.92272 * 179.85920 * 20 19 17 22 22 N 1.34955 * 107.74376 * 0.39774 * 21 20 19 23 23 C 1.46496 * 126.03378 * 179.74980 * 22 21 20 24 24 N 1.30841 * 125.89626 * 145.12314 * 19 17 16 25 25 C 1.46846 * 110.99926 * 289.38956 * 13 2 1 26 26 H 1.09004 * 109.46475 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47271 * 299.99418 * 1 2 3 28 28 H 1.08997 * 109.46722 * 60.00172 * 1 2 3 29 29 H 1.09002 * 109.47169 * 295.99751 * 4 2 1 30 30 H 1.09003 * 109.46975 * 55.99345 * 4 2 1 31 31 H 0.96998 * 119.99936 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.45636 * 294.17491 * 14 13 2 33 33 H 1.09001 * 109.46083 * 54.14905 * 14 13 2 34 34 H 1.09002 * 109.49700 * 179.12235 * 15 14 13 35 35 H 1.09004 * 109.50029 * 299.19127 * 15 14 13 36 36 H 1.09007 * 109.52208 * 182.43877 * 16 15 14 37 37 H 1.09004 * 109.52039 * 62.25318 * 16 15 14 38 38 H 1.08003 * 126.03641 * 359.97438 * 20 19 17 39 39 H 1.07996 * 126.13166 * 180.13919 * 21 20 19 40 40 H 1.09002 * 109.47295 * 269.96915 * 23 22 21 41 41 H 1.08998 * 109.47716 * 29.96971 * 23 22 21 42 42 H 1.09002 * 109.47095 * 149.97131 * 23 22 21 43 43 H 1.08994 * 109.46224 * 65.82994 * 25 13 2 44 44 H 1.08991 * 109.46361 * 305.85561 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5438 -0.6359 -1.2997 6 1 4.0819 -0.1186 -0.5193 7 6 4.2326 -1.2174 -2.3431 8 7 3.5773 -1.8461 -3.2944 9 14 6.0966 -1.1122 -2.4054 10 1 6.5895 -0.3565 -1.2259 11 1 6.6704 -2.4818 -2.3915 12 1 6.5117 -0.4142 -3.6486 13 7 2.0197 -0.6925 1.1995 14 6 1.4281 -2.0319 1.3123 15 6 2.0677 -2.7761 2.4866 16 6 1.8328 -1.9838 3.7756 17 6 2.4156 -0.5771 3.6141 18 1 3.4922 -0.6450 3.4578 19 6 2.1374 0.2293 4.8564 20 6 0.9877 0.1452 5.6485 21 6 1.1195 1.0245 6.6685 22 7 2.3066 1.6494 6.5220 23 6 2.8501 2.6848 7.4044 24 7 2.9273 1.1330 5.3773 25 6 1.7659 0.1035 2.4071 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7366 -1.7676 -1.2140 30 1 1.6193 -0.2506 -2.1378 31 1 4.0619 -2.2555 -4.0281 32 1 0.3550 -1.9418 1.4805 33 1 1.6061 -2.5862 0.3908 34 1 1.6173 -3.7644 2.5796 35 1 3.1387 -2.8793 2.3122 36 1 2.3238 -2.4882 4.6079 37 1 0.7626 -1.9145 3.9706 38 1 0.1445 -0.5077 5.4773 39 1 0.4014 1.1983 7.4562 40 1 2.5334 3.6662 7.0511 41 1 2.4826 2.5278 8.4185 42 1 3.9388 2.6311 7.4001 43 1 0.6912 0.1835 2.5702 44 1 2.1891 1.1000 2.2808 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932137018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:53 Heat of formation + Delta-G solvation = 71.350582 kcal Electronic energy + Delta-G solvation = -22105.339105 eV Core-core repulsion = 19058.940603 eV Total energy + Delta-G solvation = -3046.398503 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23681 -38.83164 -35.23616 -33.25203 -32.30245 -30.67568 -29.94194 -29.57416 -27.21388 -26.30116 -24.04900 -23.17812 -22.47948 -21.30915 -20.37413 -18.95611 -18.43471 -17.00989 -16.07307 -15.53020 -15.44603 -14.67210 -14.45109 -14.08145 -13.94423 -13.91767 -13.63895 -13.00611 -12.95934 -12.79229 -12.54361 -12.34565 -11.98128 -11.78493 -11.63825 -11.35387 -11.04686 -10.97288 -10.66768 -10.52534 -10.42267 -10.24494 -10.12948 -9.95538 -9.77351 -9.22515 -9.03937 -8.86863 -8.56132 -8.18897 -7.34558 -5.81977 -3.78865 1.86322 2.46585 2.82445 3.43591 3.50943 3.57816 4.32916 4.60192 4.63871 4.71084 4.91685 4.98624 5.12390 5.17213 5.25533 5.48236 5.55070 5.61802 5.67428 5.72996 5.79922 5.87923 5.91584 5.98579 6.00484 6.06932 6.17364 6.18219 6.29428 6.39866 6.50492 6.56024 6.67924 6.70117 6.78443 6.85696 6.96210 7.08163 7.63580 7.76863 7.78015 8.03044 8.12278 8.20682 8.66833 9.27867 9.82676 11.30161 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.004330 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.717556 B = 6464.689639 C = 6950.365504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.509 5.509 14 C 0.055 3.945 15 C -0.116 4.116 16 C -0.104 4.104 17 C -0.005 4.005 18 H 0.093 0.907 19 C 0.092 3.908 20 C -0.265 4.265 21 C 0.046 3.954 22 N -0.384 5.384 23 C 0.104 3.896 24 N -0.293 5.293 25 C 0.070 3.930 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.256 0.744 32 H 0.023 0.977 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.145 0.855 39 H 0.170 0.830 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.027 0.973 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 4.269 20.944 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.232 5.232 14 C -0.073 4.073 15 C -0.154 4.154 16 C -0.143 4.143 17 C -0.026 4.026 18 H 0.111 0.889 19 C -0.075 4.075 20 C -0.294 4.294 21 C -0.100 4.100 22 N -0.166 5.166 23 C -0.038 4.038 24 N -0.115 5.115 25 C -0.059 4.059 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.163 0.837 39 H 0.187 0.813 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.397 4.881 20.770 22.008 hybrid contribution -0.705 -0.168 0.213 0.755 sum -6.102 4.713 20.983 22.355 Atomic orbital electron populations 1.22520 0.99851 1.01315 1.00549 1.21904 0.89993 0.98302 0.91821 0.91398 1.19199 0.96380 0.95326 0.89757 1.21233 0.91693 1.32950 1.06569 0.92018 1.24996 0.97909 0.96013 0.95998 1.69975 1.34988 1.37594 1.12116 0.86600 0.86654 0.77505 0.77630 1.19740 1.21367 1.21507 1.61979 1.58530 1.01788 1.00886 1.22103 0.94927 0.91011 0.99257 1.21591 1.02441 0.97574 0.93798 1.21559 1.00407 0.94220 0.98080 1.19602 1.02286 0.92651 0.88089 0.88898 1.22411 0.92634 0.95315 0.97141 1.21393 1.01943 1.07170 0.98915 1.22476 0.90011 0.96395 1.01071 1.48523 1.14690 1.31835 1.21543 1.21790 1.01230 0.88934 0.91833 1.77409 1.21306 1.14560 0.98196 1.21954 0.97227 0.97013 0.89720 0.92786 0.94245 0.92662 0.96242 0.96439 0.93476 0.95857 0.89423 0.91973 0.90774 0.92200 0.92190 0.83725 0.81280 0.90970 0.89785 0.89409 0.95515 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.44 37.16 0.31 -2.93 16 2 C 0.09 1.83 2.26 -67.71 -0.15 1.68 16 3 H 0.07 1.47 7.98 -51.93 -0.41 1.05 16 4 C 0.03 0.78 4.37 -27.88 -0.12 0.66 16 5 C -0.49 -13.81 8.81 -34.44 -0.30 -14.11 16 6 H 0.06 1.77 7.74 -52.49 -0.41 1.37 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.57 13.29 55.43 0.74 -26.83 16 9 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 13 N -0.51 -9.88 4.29 -226.69 -0.97 -10.85 16 14 C 0.05 0.97 4.53 -3.83 -0.02 0.95 16 15 C -0.12 -1.75 6.09 -26.65 -0.16 -1.91 16 16 C -0.10 -1.41 4.93 -26.61 -0.13 -1.54 16 17 C -0.01 -0.08 2.81 -91.69 -0.26 -0.34 16 18 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 19 C 0.09 1.36 6.13 -82.40 -0.51 0.86 16 20 C -0.26 -3.24 9.97 -40.01 -0.40 -3.64 16 21 C 0.05 0.48 11.49 -17.22 -0.20 0.28 16 22 N -0.38 -4.52 4.01 -68.16 -0.27 -4.79 16 23 C 0.10 0.73 11.47 59.84 0.69 1.42 16 24 N -0.29 -4.56 12.58 33.67 0.42 -4.13 16 25 C 0.07 1.19 4.41 -3.83 -0.02 1.17 16 26 H 0.05 0.94 6.45 -51.93 -0.34 0.60 16 27 H 0.04 0.63 6.84 -51.93 -0.35 0.27 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.02 0.52 6.28 -51.93 -0.33 0.20 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 32 H 0.02 0.39 6.57 -51.93 -0.34 0.04 16 33 H 0.09 1.78 6.17 -51.93 -0.32 1.46 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.06 0.75 7.20 -51.93 -0.37 0.37 16 38 H 0.15 1.53 7.37 -52.48 -0.39 1.15 16 39 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.03 0.43 6.89 -51.93 -0.36 0.08 16 44 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -33.03 343.34 -8.69 -41.72 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.40 Total: -1.62 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -1.36 Total: -16.11 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.09 Total: -46.60 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.03 -8.69 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932137018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.072 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds