Wall clock time and date at job start Mon Mar 30 2020 02:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47262 * 2 1 4 4 C 1.53000 * 109.47508 * 239.99797 * 2 1 3 5 5 C 1.50699 * 109.47259 * 175.99617 * 4 2 1 6 6 H 1.07993 * 120.00262 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99615 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00293 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99701 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47089 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46902 * 119.99831 * 9 7 5 12 12 H 1.48496 * 109.47059 * 240.00255 * 9 7 5 13 13 N 1.46904 * 109.46968 * 119.99839 * 2 1 3 14 14 C 1.46851 * 111.00141 * 53.60495 * 13 2 1 15 15 C 1.53037 * 109.52229 * 174.16093 * 14 13 2 16 16 C 1.53113 * 109.27951 * 59.17482 * 15 14 13 17 17 C 1.53117 * 109.16365 * 302.34295 * 16 15 14 18 18 H 1.08993 * 109.50495 * 297.71495 * 17 16 15 19 19 C 1.50700 * 109.53528 * 177.61206 * 17 16 15 20 20 C 1.39870 * 125.90338 * 324.81916 * 19 17 16 21 21 C 1.35312 * 107.92272 * 179.85920 * 20 19 17 22 22 N 1.34955 * 107.74376 * 0.39774 * 21 20 19 23 23 C 1.46496 * 126.03378 * 179.74980 * 22 21 20 24 24 N 1.30841 * 125.89626 * 145.12314 * 19 17 16 25 25 C 1.46846 * 110.99926 * 289.38956 * 13 2 1 26 26 H 1.09004 * 109.46475 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47271 * 299.99418 * 1 2 3 28 28 H 1.08997 * 109.46722 * 60.00172 * 1 2 3 29 29 H 1.09002 * 109.47169 * 295.99751 * 4 2 1 30 30 H 1.09003 * 109.46975 * 55.99345 * 4 2 1 31 31 H 0.96998 * 119.99936 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.45636 * 294.17491 * 14 13 2 33 33 H 1.09001 * 109.46083 * 54.14905 * 14 13 2 34 34 H 1.09002 * 109.49700 * 179.12235 * 15 14 13 35 35 H 1.09004 * 109.50029 * 299.19127 * 15 14 13 36 36 H 1.09007 * 109.52208 * 182.43877 * 16 15 14 37 37 H 1.09004 * 109.52039 * 62.25318 * 16 15 14 38 38 H 1.08003 * 126.03641 * 359.97438 * 20 19 17 39 39 H 1.07996 * 126.13166 * 180.13919 * 21 20 19 40 40 H 1.09002 * 109.47295 * 269.96915 * 23 22 21 41 41 H 1.08998 * 109.47716 * 29.96971 * 23 22 21 42 42 H 1.09002 * 109.47095 * 149.97131 * 23 22 21 43 43 H 1.08994 * 109.46224 * 65.82994 * 25 13 2 44 44 H 1.08991 * 109.46361 * 305.85561 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5438 -0.6359 -1.2997 6 1 4.0819 -0.1186 -0.5193 7 6 4.2326 -1.2174 -2.3431 8 7 3.5773 -1.8461 -3.2944 9 14 6.0966 -1.1122 -2.4054 10 1 6.5895 -0.3565 -1.2259 11 1 6.6704 -2.4818 -2.3915 12 1 6.5117 -0.4142 -3.6486 13 7 2.0197 -0.6925 1.1995 14 6 1.4281 -2.0319 1.3123 15 6 2.0677 -2.7761 2.4866 16 6 1.8328 -1.9838 3.7756 17 6 2.4156 -0.5771 3.6141 18 1 3.4922 -0.6450 3.4578 19 6 2.1374 0.2293 4.8564 20 6 0.9877 0.1452 5.6485 21 6 1.1195 1.0245 6.6685 22 7 2.3066 1.6494 6.5220 23 6 2.8501 2.6848 7.4044 24 7 2.9273 1.1330 5.3773 25 6 1.7659 0.1035 2.4071 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7366 -1.7676 -1.2140 30 1 1.6193 -0.2506 -2.1378 31 1 4.0619 -2.2555 -4.0281 32 1 0.3550 -1.9418 1.4805 33 1 1.6061 -2.5862 0.3908 34 1 1.6173 -3.7644 2.5796 35 1 3.1387 -2.8793 2.3122 36 1 2.3238 -2.4882 4.6079 37 1 0.7626 -1.9145 3.9706 38 1 0.1445 -0.5077 5.4773 39 1 0.4014 1.1983 7.4562 40 1 2.5334 3.6662 7.0511 41 1 2.4826 2.5278 8.4185 42 1 3.9388 2.6311 7.4001 43 1 0.6912 0.1835 2.5702 44 1 2.1891 1.1000 2.2808 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932137018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:52 Heat of formation + Delta-G solvation = 50.367144 kcal Electronic energy + Delta-G solvation = -22106.249015 eV Core-core repulsion = 19058.940603 eV Total energy + Delta-G solvation = -3047.308413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.15030 -40.24289 -36.67079 -34.72314 -33.94710 -31.81549 -31.14727 -30.89176 -29.10765 -27.13239 -25.61453 -24.75459 -23.98571 -22.33823 -21.52836 -20.12490 -19.89623 -18.33050 -17.84486 -16.89053 -16.54946 -16.33119 -15.85960 -15.38135 -15.28366 -15.00531 -14.68115 -14.51648 -14.18027 -13.86380 -13.69971 -13.53114 -13.36744 -13.24115 -13.09183 -12.92215 -12.73936 -12.56542 -12.36785 -12.20642 -11.85647 -11.68822 -11.49518 -11.39462 -11.18073 -11.05252 -10.89737 -10.45600 -10.14499 -9.42391 -8.84416 -8.08527 -6.12316 1.00843 1.40447 1.41613 1.55223 1.73214 1.87214 2.48489 3.11548 3.27916 3.62332 3.87580 3.99908 4.10850 4.12753 4.23155 4.33877 4.44010 4.44503 4.46371 4.51240 4.57653 4.69511 4.70255 4.75671 4.81365 4.86528 4.90488 4.97442 5.05031 5.13657 5.15668 5.24849 5.25627 5.32078 5.37640 5.54865 5.58143 5.71452 5.74379 5.92628 6.25224 6.36445 6.53098 6.57329 6.84091 7.01273 7.53102 9.03678 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.004330 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.717556 B = 6464.689639 C = 6950.365504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 H 0.055 0.945 4 C 0.039 3.961 5 C -0.497 4.497 6 H 0.052 0.948 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.532 5.532 14 C 0.058 3.942 15 C -0.112 4.112 16 C -0.092 4.092 17 C 0.000 4.000 18 H 0.062 0.938 19 C 0.075 3.925 20 C -0.283 4.283 21 C 0.062 3.938 22 N -0.385 5.385 23 C 0.094 3.906 24 N -0.346 5.346 25 C 0.081 3.919 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.001 0.999 30 H -0.008 1.008 31 H 0.259 0.741 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.162 0.838 39 H 0.217 0.783 40 H 0.082 0.918 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.232 4.601 23.864 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 H 0.074 0.926 4 C 0.001 3.999 5 C -0.535 4.535 6 H 0.071 0.929 7 C -0.198 4.198 8 N -0.581 5.581 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.255 5.255 14 C -0.070 4.070 15 C -0.150 4.150 16 C -0.130 4.130 17 C -0.021 4.021 18 H 0.081 0.919 19 C -0.091 4.091 20 C -0.312 4.312 21 C -0.084 4.084 22 N -0.168 5.168 23 C -0.046 4.046 24 N -0.169 5.169 25 C -0.048 4.048 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.019 0.981 30 H 0.010 0.990 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.179 0.821 39 H 0.234 0.766 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.503 5.222 23.699 25.124 hybrid contribution -0.355 -0.205 -0.635 0.756 sum -6.858 5.018 23.064 24.580 Atomic orbital electron populations 1.22363 0.96978 1.01910 1.01781 1.21602 0.92259 0.96845 0.90708 0.92650 1.19034 0.95052 0.94506 0.91259 1.21496 0.93275 1.32546 1.06221 0.92935 1.25787 1.02599 0.95733 0.95703 1.70087 1.36814 1.38460 1.12750 0.85577 0.81065 0.77696 0.77761 1.19482 1.20691 1.20674 1.61852 1.59611 1.02795 1.01288 1.22060 0.96207 0.89886 0.98815 1.21569 1.00954 0.98830 0.93598 1.21483 1.01647 0.92572 0.97324 1.19438 1.00351 0.94071 0.88211 0.91936 1.22300 0.93953 0.95629 0.97190 1.21648 1.01705 1.08533 0.99281 1.23196 0.89682 0.94455 1.01090 1.48889 1.15081 1.32079 1.20726 1.22158 1.01162 0.88346 0.92940 1.77306 1.23217 1.15896 1.00455 1.21852 0.98004 0.95801 0.89157 0.92446 0.91900 0.92488 0.98069 0.99005 0.93265 0.93950 0.92886 0.89417 0.93041 0.90849 0.90095 0.82090 0.76643 0.89967 0.86037 0.89981 0.94032 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.95 8.44 71.98 0.61 -5.34 16 2 C 0.09 4.04 2.26 44.91 0.10 4.14 16 3 H 0.06 2.48 7.98 -2.39 -0.02 2.46 16 4 C 0.04 2.07 4.37 29.85 0.13 2.20 16 5 C -0.50 -29.27 8.81 25.60 0.23 -29.04 16 6 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -58.60 13.29 21.45 0.28 -58.31 16 9 Si 0.95 47.08 29.54 68.60 2.03 49.11 16 10 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 N -0.53 -21.07 4.29 -871.11 -3.74 -24.80 16 14 C 0.06 2.05 4.53 86.32 0.39 2.44 16 15 C -0.11 -3.28 6.09 30.64 0.19 -3.09 16 16 C -0.09 -2.33 4.93 30.67 0.15 -2.18 16 17 C 0.00 0.01 2.81 -11.49 -0.03 -0.03 16 18 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 19 C 0.08 2.14 6.13 43.10 0.26 2.41 16 20 C -0.28 -6.11 9.97 21.99 0.22 -5.89 16 21 C 0.06 1.05 11.49 83.54 0.96 2.01 16 22 N -0.39 -8.18 4.01 -369.57 -1.48 -9.66 16 23 C 0.09 1.07 11.47 127.77 1.47 2.53 16 24 N -0.35 -10.58 12.58 -47.38 -0.60 -11.18 16 25 C 0.08 2.73 4.41 86.33 0.38 3.11 16 26 H 0.06 1.94 6.45 -2.39 -0.02 1.93 16 27 H 0.06 1.89 6.84 -2.39 -0.02 1.87 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.00 0.06 6.28 -2.39 -0.01 0.05 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.04 1.33 6.57 -2.39 -0.02 1.32 16 33 H 0.05 2.24 6.17 -2.39 -0.01 2.22 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.08 1.74 7.20 -2.38 -0.02 1.72 16 38 H 0.16 2.80 7.37 -2.91 -0.02 2.78 16 39 H 0.22 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.04 1.28 6.89 -2.39 -0.02 1.26 16 44 H 0.05 1.81 8.01 -2.39 -0.02 1.79 16 Total: -1.00 -74.51 343.34 2.97 -71.54 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.96 Total: 9.71 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 5.51 Total: -26.40 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -5.53 Total: -103.95 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -74.51 2.97 -71.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932137018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.905 kcal (2) G-P(sol) polarization free energy of solvation -74.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds