Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46703 * 2 1 4 4 C 1.52994 * 109.47055 * 119.99951 * 2 1 3 5 5 C 1.50702 * 109.47404 * 185.00269 * 4 2 1 6 6 H 1.08007 * 119.99248 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00521 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99940 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00177 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47097 * 59.99935 * 9 7 5 11 11 H 1.48501 * 109.47112 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47063 * 299.99716 * 9 7 5 13 13 N 1.46900 * 109.47150 * 240.00112 * 2 1 3 14 14 C 1.46845 * 111.00045 * 305.79130 * 13 2 1 15 15 C 1.53166 * 109.55463 * 185.84196 * 14 13 2 16 16 C 1.53120 * 109.20873 * 300.85535 * 15 14 13 17 17 C 1.53123 * 109.21163 * 57.62805 * 16 15 14 18 18 H 1.08997 * 109.50228 * 62.29448 * 17 16 15 19 19 C 1.50697 * 109.50478 * 182.37233 * 17 16 15 20 20 C 1.39867 * 125.89629 * 35.00003 * 19 17 16 21 21 C 1.35312 * 107.92095 * 180.02562 * 20 19 17 22 22 N 1.34945 * 107.74682 * 359.97438 * 21 20 19 23 23 C 1.46507 * 126.04118 * 179.97438 * 22 21 20 24 24 N 1.30829 * 125.90181 * 214.69351 * 19 17 16 25 25 C 1.46848 * 110.99918 * 69.99718 * 13 2 1 26 26 H 1.09001 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47280 * 300.00111 * 1 2 3 28 28 H 1.09005 * 109.46889 * 59.99971 * 1 2 3 29 29 H 1.09001 * 109.46899 * 305.00222 * 4 2 1 30 30 H 1.09001 * 109.47206 * 64.99839 * 4 2 1 31 31 H 0.96990 * 120.00226 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.45905 * 305.85870 * 14 13 2 33 33 H 1.09002 * 109.46112 * 65.82067 * 14 13 2 34 34 H 1.09004 * 109.59002 * 180.90917 * 15 14 13 35 35 H 1.08997 * 109.49280 * 60.74777 * 15 14 13 36 36 H 1.09002 * 109.52427 * 297.69078 * 16 15 14 37 37 H 1.08995 * 109.52208 * 177.56397 * 16 15 14 38 38 H 1.07999 * 126.04316 * 359.97438 * 20 19 17 39 39 H 1.08007 * 126.13306 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46700 * 90.00387 * 23 22 21 41 41 H 1.08997 * 109.47206 * 210.00186 * 23 22 21 42 42 H 1.09000 * 109.47091 * 330.00642 * 23 22 21 43 43 H 1.09006 * 109.46097 * 54.14433 * 25 13 2 44 44 H 1.08996 * 109.46972 * 294.17743 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0860 0.5392 7 6 4.2304 -1.1934 2.3578 8 7 3.5764 -1.8378 3.2995 9 14 6.0921 -1.0621 2.4361 10 1 6.4854 0.3686 2.4958 11 1 6.5872 -1.7631 3.6480 12 1 6.6838 -1.6882 1.2264 13 7 2.0197 -0.6925 -1.1994 14 6 1.4392 -2.0372 -1.3046 15 6 2.0795 -2.7815 -2.4802 16 6 1.8312 -1.9945 -3.7700 17 6 2.4026 -0.5822 -3.6164 18 1 3.4805 -0.6401 -3.4660 19 6 2.1105 0.2168 -4.8603 20 6 0.9588 0.1167 -5.6477 21 6 1.0754 0.9959 -6.6697 22 7 2.2587 1.6302 -6.5335 23 6 2.7895 2.6650 -7.4246 24 7 2.8877 1.1279 -5.3871 25 6 1.7530 0.0970 -2.4086 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6053 -0.2617 2.1369 30 1 1.7516 -1.7715 1.2056 31 1 4.0608 -2.2451 4.0345 32 1 1.6264 -2.5867 -0.3820 33 1 0.3645 -1.9571 -1.4677 34 1 1.6375 -3.7739 -2.5688 35 1 3.1523 -2.8740 -2.3112 36 1 0.7595 -1.9351 -3.9600 37 1 2.3216 -2.4971 -4.6036 38 1 0.1243 -0.5458 -5.4716 39 1 0.3510 1.1610 -7.4535 40 1 2.4673 3.6457 -7.0749 41 1 3.8785 2.6195 -7.4260 42 1 2.4176 2.4995 -8.4357 43 1 2.1681 1.0977 -2.2879 44 1 0.6768 0.1671 -2.5666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932137020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = 71.466039 kcal Electronic energy + Delta-G solvation = -22100.039711 eV Core-core repulsion = 19053.646215 eV Total energy + Delta-G solvation = -3046.393496 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23923 -38.82928 -35.23691 -33.25026 -32.30341 -30.67353 -29.94129 -29.57352 -27.21222 -26.30169 -24.04776 -23.18776 -22.47118 -21.31056 -20.37511 -18.95756 -18.43151 -17.01131 -16.07091 -15.53200 -15.44809 -14.67015 -14.45271 -14.08314 -13.94542 -13.91733 -13.64330 -13.00821 -12.96138 -12.79081 -12.54465 -12.34169 -11.98005 -11.77929 -11.64132 -11.35066 -11.04333 -10.95838 -10.65925 -10.52790 -10.45388 -10.25271 -10.12816 -9.95244 -9.76880 -9.22537 -9.04023 -8.88956 -8.56232 -8.18064 -7.34846 -5.81747 -3.78920 1.86238 2.46429 2.82369 3.46957 3.49885 3.54650 4.32784 4.60146 4.63695 4.70952 4.91577 4.98488 5.12279 5.17081 5.25498 5.48267 5.55058 5.61750 5.67293 5.72861 5.79841 5.88003 5.91511 5.98645 6.00480 6.06965 6.17351 6.18291 6.29486 6.39784 6.50386 6.56078 6.67828 6.70060 6.78559 6.85937 6.96088 7.08165 7.63449 7.76725 7.77902 8.02840 8.12439 8.20711 8.66573 9.27026 9.82516 11.30333 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.004311 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.531411 B = 6493.060759 C = 6970.924028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.031 3.969 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.509 5.509 14 C 0.055 3.945 15 C -0.116 4.116 16 C -0.105 4.105 17 C -0.005 4.005 18 H 0.093 0.907 19 C 0.092 3.908 20 C -0.265 4.265 21 C 0.046 3.954 22 N -0.384 5.384 23 C 0.104 3.896 24 N -0.293 5.293 25 C 0.070 3.930 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.257 0.743 32 H 0.088 0.912 33 H 0.023 0.977 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.145 0.855 39 H 0.170 0.830 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.169 4.138 -20.924 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.086 0.914 4 C -0.006 4.006 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.203 1.203 13 N -0.232 5.232 14 C -0.073 4.073 15 C -0.154 4.154 16 C -0.143 4.143 17 C -0.026 4.026 18 H 0.111 0.889 19 C -0.075 4.075 20 C -0.294 4.294 21 C -0.099 4.099 22 N -0.166 5.166 23 C -0.038 4.038 24 N -0.115 5.115 25 C -0.059 4.059 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.163 0.837 39 H 0.187 0.813 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.456 4.760 -20.752 21.978 hybrid contribution -0.699 -0.151 -0.224 0.749 sum -6.155 4.609 -20.975 22.340 Atomic orbital electron populations 1.22523 0.99859 1.01304 1.00557 1.21908 0.89990 0.98329 0.91795 0.91373 1.19192 0.96314 0.95352 0.89748 1.21155 0.91842 1.32807 1.06856 0.92171 1.24987 0.97903 0.95940 0.96012 1.69954 1.35239 1.37076 1.12419 0.86709 0.86537 0.77975 0.77033 1.20553 1.21738 1.20349 1.61975 1.58674 1.01701 1.00859 1.22128 0.94998 0.90914 0.99286 1.21614 1.02420 0.97586 0.93780 1.21561 1.00442 0.94189 0.98092 1.19602 1.02252 0.92702 0.88065 0.88903 1.22407 0.92750 0.95189 0.97146 1.21394 1.01959 1.07063 0.99015 1.22475 0.90117 0.96263 1.01090 1.48525 1.14805 1.31903 1.21362 1.21792 1.01399 0.88965 0.91625 1.77404 1.21272 1.14816 0.97988 1.21956 0.97190 0.97078 0.89698 0.92802 0.92656 0.94237 0.96445 0.96207 0.93348 0.89389 0.95858 0.91949 0.90787 0.92194 0.92212 0.83723 0.81278 0.90982 0.89405 0.89776 0.91369 0.95495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.45 37.16 0.31 -2.94 16 2 C 0.09 1.83 2.25 -67.71 -0.15 1.68 16 3 H 0.07 1.47 7.99 -51.93 -0.41 1.06 16 4 C 0.03 0.79 4.37 -27.89 -0.12 0.67 16 5 C -0.49 -13.88 8.84 -34.44 -0.30 -14.19 16 6 H 0.06 1.72 7.74 -52.48 -0.41 1.32 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.91 -27.58 13.29 55.43 0.74 -26.85 16 9 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.51 -9.89 4.32 -226.61 -0.98 -10.87 16 14 C 0.05 0.97 4.55 -3.77 -0.02 0.95 16 15 C -0.12 -1.75 6.11 -26.58 -0.16 -1.91 16 16 C -0.10 -1.41 4.92 -26.61 -0.13 -1.54 16 17 C -0.01 -0.08 2.81 -91.69 -0.26 -0.34 16 18 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 19 C 0.09 1.36 6.13 -82.41 -0.51 0.86 16 20 C -0.26 -3.24 9.97 -40.02 -0.40 -3.64 16 21 C 0.05 0.48 11.49 -17.23 -0.20 0.28 16 22 N -0.38 -4.52 4.01 -68.16 -0.27 -4.79 16 23 C 0.10 0.73 11.47 59.85 0.69 1.41 16 24 N -0.29 -4.55 12.57 33.67 0.42 -4.13 16 25 C 0.07 1.19 4.40 -3.83 -0.02 1.17 16 26 H 0.05 0.94 6.46 -51.93 -0.34 0.60 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.63 6.81 -51.93 -0.35 0.28 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.53 6.22 -51.93 -0.32 0.21 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.09 1.79 6.12 -51.93 -0.32 1.48 16 33 H 0.02 0.39 6.58 -51.93 -0.34 0.04 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.75 7.19 -51.93 -0.37 0.37 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.15 1.54 7.37 -52.49 -0.39 1.15 16 39 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 44 H 0.03 0.44 6.87 -51.93 -0.36 0.08 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -32.98 343.28 -8.69 -41.67 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.39 Total: -1.51 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.36 Total: -16.16 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.09 Total: -46.63 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.98 -8.69 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932137020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.135 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds