Wall clock time and date at job start Mon Mar 30 2020 02:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47719 * 2 1 4 4 C 1.52999 * 109.47107 * 120.00343 * 2 1 3 5 5 C 1.50697 * 109.47264 * 183.56653 * 4 2 1 6 6 H 1.07998 * 120.00080 * 5.08746 * 5 4 2 7 7 C 1.37877 * 120.00027 * 185.08384 * 5 4 2 8 8 N 1.31511 * 120.00197 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99830 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47312 * 59.99912 * 9 7 5 11 11 H 1.48500 * 109.46835 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47204 * 299.99545 * 9 7 5 13 13 N 1.46906 * 109.46789 * 240.00000 * 2 1 3 14 14 C 1.46845 * 110.99610 * 72.95843 * 13 2 1 15 15 C 1.53044 * 109.51717 * 174.15907 * 14 13 2 16 16 C 1.53119 * 109.30876 * 59.16354 * 15 14 13 17 17 C 1.53122 * 109.15642 * 302.39660 * 16 15 14 18 18 H 1.08994 * 109.50608 * 297.63768 * 17 16 15 19 19 C 1.50700 * 109.49987 * 177.55883 * 17 16 15 20 20 C 1.39865 * 125.90193 * 324.79574 * 19 17 16 21 21 C 1.35320 * 107.92270 * 179.86631 * 20 19 17 22 22 N 1.34950 * 107.74264 * 0.39667 * 21 20 19 23 23 C 1.46498 * 126.03612 * 179.75636 * 22 21 20 24 24 N 1.30843 * 125.89440 * 145.10976 * 19 17 16 25 25 C 1.46850 * 111.00017 * 308.75044 * 13 2 1 26 26 H 1.09007 * 109.47093 * 300.00130 * 1 2 3 27 27 H 1.09000 * 109.47282 * 59.99466 * 1 2 3 28 28 H 1.08995 * 109.47719 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47049 * 303.57244 * 4 2 1 30 30 H 1.08999 * 109.47155 * 63.56708 * 4 2 1 31 31 H 0.96995 * 120.00162 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46521 * 294.17407 * 14 13 2 33 33 H 1.08996 * 109.46429 * 54.15747 * 14 13 2 34 34 H 1.09001 * 109.50206 * 179.12076 * 15 14 13 35 35 H 1.09000 * 109.50593 * 299.19626 * 15 14 13 36 36 H 1.09002 * 109.55434 * 182.48155 * 16 15 14 37 37 H 1.08993 * 109.49620 * 62.28522 * 16 15 14 38 38 H 1.08000 * 126.04047 * 359.97438 * 20 19 17 39 39 H 1.07996 * 126.13044 * 180.14728 * 21 20 19 40 40 H 1.09003 * 109.46977 * 269.96751 * 23 22 21 41 41 H 1.09000 * 109.47556 * 29.97020 * 23 22 21 42 42 H 1.09004 * 109.47602 * 149.97314 * 23 22 21 43 43 H 1.08996 * 109.46103 * 65.82249 * 25 13 2 44 44 H 1.09005 * 109.45082 * 305.84888 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5444 -0.6453 1.2942 6 1 4.0780 -0.0647 0.5563 7 6 4.2395 -1.3168 2.2775 8 7 3.5896 -2.0233 3.1765 9 14 6.1042 -1.2219 2.3337 10 1 6.5231 0.1930 2.5008 11 1 6.6064 -2.0247 3.4776 12 1 6.6655 -1.7581 1.0678 13 7 2.0196 -0.6925 -1.1995 14 6 1.8161 0.1276 -2.4005 15 6 2.4662 -0.5583 -3.6042 16 6 1.8408 -1.9427 -3.7968 17 6 2.0232 -2.7592 -2.5144 18 1 3.0865 -2.9007 -2.3211 19 6 1.3579 -4.1020 -2.6742 20 6 0.1779 -4.3537 -3.3817 21 6 -0.0872 -5.6776 -3.2918 22 7 0.8857 -6.2421 -2.5462 23 6 0.9874 -7.6602 -2.1926 24 7 1.7813 -5.2327 -2.1701 25 6 1.3859 -2.0096 -1.3423 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6253 -0.2458 2.1381 30 1 1.7298 -1.7658 1.2177 31 1 4.0787 -2.4960 3.8680 32 1 0.7481 0.2459 -2.5829 33 1 2.2700 1.1075 -2.2523 34 1 2.3016 0.0429 -4.4984 35 1 3.5368 -0.6638 -3.4287 36 1 2.3313 -2.4525 -4.6260 37 1 0.7778 -1.8348 -4.0119 38 1 -0.4158 -3.6211 -3.9083 39 1 -0.9289 -6.1899 -3.7338 40 1 0.4617 -7.8394 -1.2547 41 1 0.5394 -8.2644 -2.9815 42 1 2.0368 -7.9319 -2.0785 43 1 0.3199 -1.8812 -1.5296 44 1 1.5273 -2.5817 -0.4253 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932137021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:58 Heat of formation + Delta-G solvation = 72.025810 kcal Electronic energy + Delta-G solvation = -22377.672719 eV Core-core repulsion = 19331.303496 eV Total energy + Delta-G solvation = -3046.369222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08751 -38.80866 -35.12401 -33.29178 -32.24595 -30.61551 -29.85242 -29.42663 -27.20679 -26.22585 -24.02742 -23.06180 -22.69067 -21.11617 -20.00604 -19.06173 -18.47277 -16.91990 -16.06435 -15.50112 -15.26354 -14.55013 -14.36990 -14.29396 -13.85154 -13.70560 -13.48803 -13.14048 -12.83057 -12.68730 -12.45277 -12.26905 -11.96736 -11.75948 -11.63404 -11.36063 -11.02385 -10.85930 -10.59915 -10.48615 -10.40936 -10.29925 -10.12710 -9.88329 -9.82050 -9.10313 -8.98884 -8.86271 -8.41770 -8.15438 -7.33167 -5.78621 -3.75578 2.02474 2.62654 2.97590 3.48184 3.51369 3.55588 4.44983 4.64768 4.68257 4.83005 5.02091 5.10096 5.20582 5.27430 5.33148 5.45977 5.58828 5.68009 5.73428 5.81878 5.87067 5.88956 5.90927 5.99096 6.04271 6.08099 6.12651 6.21684 6.28637 6.40931 6.48879 6.56131 6.69114 6.76957 6.85250 6.85736 7.10031 7.11730 7.63845 7.80292 7.94149 8.03049 8.15056 8.22576 8.68514 9.29119 9.85270 11.33600 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.005848 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.239900 B = 4787.200855 C = 5791.379990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.278 1.278 13 N -0.508 5.508 14 C 0.052 3.948 15 C -0.115 4.115 16 C -0.105 4.105 17 C -0.006 4.006 18 H 0.094 0.906 19 C 0.092 3.908 20 C -0.266 4.266 21 C 0.045 3.955 22 N -0.383 5.383 23 C 0.104 3.896 24 N -0.286 5.286 25 C 0.075 3.925 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.014 0.986 30 H 0.022 0.978 31 H 0.256 0.744 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.143 0.857 39 H 0.169 0.831 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.026 0.974 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.926 -5.668 -15.507 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.203 1.203 13 N -0.232 5.232 14 C -0.076 4.076 15 C -0.153 4.153 16 C -0.143 4.143 17 C -0.027 4.027 18 H 0.112 0.888 19 C -0.076 4.076 20 C -0.296 4.296 21 C -0.101 4.101 22 N -0.165 5.165 23 C -0.038 4.038 24 N -0.107 5.107 25 C -0.054 4.054 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.161 0.839 39 H 0.186 0.814 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.044 0.956 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.481 -6.616 -14.554 17.651 hybrid contribution -0.623 0.254 -0.445 0.807 sum -8.104 -6.362 -15.000 18.197 Atomic orbital electron populations 1.22523 0.99857 1.01332 1.00518 1.21899 0.89980 0.98130 0.91963 0.91331 1.19186 0.96358 0.95535 0.89620 1.21090 0.91544 1.28815 1.10953 0.92317 1.24978 0.97867 0.95894 0.96064 1.69951 1.35148 1.32987 1.16502 0.86717 0.86662 0.77701 0.77221 1.20575 1.21765 1.20348 1.61970 1.57809 1.01949 1.01424 1.22093 0.97487 0.97011 0.91040 1.21571 1.01290 0.95369 0.97051 1.21549 1.00666 0.95602 0.96465 1.19609 1.00632 0.86758 0.95728 0.88797 1.22366 0.94852 0.94458 0.95895 1.21353 1.01439 0.95416 1.11394 1.22449 0.95086 0.94613 0.97962 1.48543 1.19493 1.07898 1.40563 1.21791 1.04581 0.75938 1.01499 1.77495 1.14616 0.95815 1.22787 1.21952 0.94459 0.91008 0.98010 0.92673 0.94210 0.92839 0.96828 0.95991 0.93394 0.95884 0.91314 0.92103 0.90929 0.92175 0.92187 0.83879 0.81383 0.90891 0.89878 0.89382 0.95567 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 8.40 37.16 0.31 -2.96 16 2 C 0.09 1.84 2.26 -67.71 -0.15 1.69 16 3 H 0.07 1.44 7.93 -51.93 -0.41 1.03 16 4 C 0.03 0.79 4.40 -27.88 -0.12 0.66 16 5 C -0.49 -13.95 8.80 -34.44 -0.30 -14.25 16 6 H 0.06 1.68 7.75 -52.49 -0.41 1.27 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -28.10 13.29 55.43 0.74 -27.36 16 9 Si 0.89 22.76 29.54 -169.99 -5.02 17.74 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 N -0.51 -9.93 4.26 -226.69 -0.97 -10.90 16 14 C 0.05 0.82 5.18 -3.83 -0.02 0.80 16 15 C -0.11 -1.58 6.09 -26.65 -0.16 -1.74 16 16 C -0.10 -1.43 4.93 -26.61 -0.13 -1.56 16 17 C -0.01 -0.11 2.81 -91.69 -0.26 -0.37 16 18 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 19 C 0.09 1.53 6.13 -82.41 -0.51 1.02 16 20 C -0.27 -3.63 9.97 -40.01 -0.40 -4.03 16 21 C 0.04 0.53 11.49 -17.22 -0.20 0.33 16 22 N -0.38 -5.26 4.01 -68.16 -0.27 -5.53 16 23 C 0.10 0.93 11.47 59.85 0.69 1.62 16 24 N -0.29 -5.13 12.58 33.67 0.42 -4.71 16 25 C 0.07 1.41 3.73 -3.83 -0.01 1.40 16 26 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 27 H 0.04 0.62 6.93 -51.93 -0.36 0.26 16 28 H 0.05 0.97 6.44 -51.93 -0.33 0.64 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.62 6.39 -51.93 -0.33 0.29 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.02 0.34 6.98 -51.93 -0.36 -0.02 16 33 H 0.07 1.07 7.98 -51.93 -0.41 0.65 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.75 7.19 -51.93 -0.37 0.38 16 38 H 0.14 1.66 7.37 -52.49 -0.39 1.27 16 39 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.47 6.57 -51.93 -0.34 0.13 16 44 H 0.09 1.97 6.28 -51.93 -0.33 1.64 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -33.80 343.58 -8.70 -42.50 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.41 Total: -0.93 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.36 Total: -15.97 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.08 Total: -48.51 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.80 -8.70 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932137021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.524 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds