Wall clock time and date at job start Mon Mar 30 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47719 * 2 1 4 4 C 1.52999 * 109.47107 * 120.00343 * 2 1 3 5 5 C 1.50697 * 109.47264 * 183.56653 * 4 2 1 6 6 H 1.07998 * 120.00080 * 5.08746 * 5 4 2 7 7 C 1.37877 * 120.00027 * 185.08384 * 5 4 2 8 8 N 1.31511 * 120.00197 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99830 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47312 * 59.99912 * 9 7 5 11 11 H 1.48500 * 109.46835 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47204 * 299.99545 * 9 7 5 13 13 N 1.46906 * 109.46789 * 240.00000 * 2 1 3 14 14 C 1.46845 * 110.99610 * 72.95843 * 13 2 1 15 15 C 1.53044 * 109.51717 * 174.15907 * 14 13 2 16 16 C 1.53119 * 109.30876 * 59.16354 * 15 14 13 17 17 C 1.53122 * 109.15642 * 302.39660 * 16 15 14 18 18 H 1.08994 * 109.50608 * 297.63768 * 17 16 15 19 19 C 1.50700 * 109.49987 * 177.55883 * 17 16 15 20 20 C 1.39865 * 125.90193 * 324.79574 * 19 17 16 21 21 C 1.35320 * 107.92270 * 179.86631 * 20 19 17 22 22 N 1.34950 * 107.74264 * 0.39667 * 21 20 19 23 23 C 1.46498 * 126.03612 * 179.75636 * 22 21 20 24 24 N 1.30843 * 125.89440 * 145.10976 * 19 17 16 25 25 C 1.46850 * 111.00017 * 308.75044 * 13 2 1 26 26 H 1.09007 * 109.47093 * 300.00130 * 1 2 3 27 27 H 1.09000 * 109.47282 * 59.99466 * 1 2 3 28 28 H 1.08995 * 109.47719 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47049 * 303.57244 * 4 2 1 30 30 H 1.08999 * 109.47155 * 63.56708 * 4 2 1 31 31 H 0.96995 * 120.00162 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46521 * 294.17407 * 14 13 2 33 33 H 1.08996 * 109.46429 * 54.15747 * 14 13 2 34 34 H 1.09001 * 109.50206 * 179.12076 * 15 14 13 35 35 H 1.09000 * 109.50593 * 299.19626 * 15 14 13 36 36 H 1.09002 * 109.55434 * 182.48155 * 16 15 14 37 37 H 1.08993 * 109.49620 * 62.28522 * 16 15 14 38 38 H 1.08000 * 126.04047 * 359.97438 * 20 19 17 39 39 H 1.07996 * 126.13044 * 180.14728 * 21 20 19 40 40 H 1.09003 * 109.46977 * 269.96751 * 23 22 21 41 41 H 1.09000 * 109.47556 * 29.97020 * 23 22 21 42 42 H 1.09004 * 109.47602 * 149.97314 * 23 22 21 43 43 H 1.08996 * 109.46103 * 65.82249 * 25 13 2 44 44 H 1.09005 * 109.45082 * 305.84888 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5444 -0.6453 1.2942 6 1 4.0780 -0.0647 0.5563 7 6 4.2395 -1.3168 2.2775 8 7 3.5896 -2.0233 3.1765 9 14 6.1042 -1.2219 2.3337 10 1 6.5231 0.1930 2.5008 11 1 6.6064 -2.0247 3.4776 12 1 6.6655 -1.7581 1.0678 13 7 2.0196 -0.6925 -1.1995 14 6 1.8161 0.1276 -2.4005 15 6 2.4662 -0.5583 -3.6042 16 6 1.8408 -1.9427 -3.7968 17 6 2.0232 -2.7592 -2.5144 18 1 3.0865 -2.9007 -2.3211 19 6 1.3579 -4.1020 -2.6742 20 6 0.1779 -4.3537 -3.3817 21 6 -0.0872 -5.6776 -3.2918 22 7 0.8857 -6.2421 -2.5462 23 6 0.9874 -7.6602 -2.1926 24 7 1.7813 -5.2327 -2.1701 25 6 1.3859 -2.0096 -1.3423 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6253 -0.2458 2.1381 30 1 1.7298 -1.7658 1.2177 31 1 4.0787 -2.4960 3.8680 32 1 0.7481 0.2459 -2.5829 33 1 2.2700 1.1075 -2.2523 34 1 2.3016 0.0429 -4.4984 35 1 3.5368 -0.6638 -3.4287 36 1 2.3313 -2.4525 -4.6260 37 1 0.7778 -1.8348 -4.0119 38 1 -0.4158 -3.6211 -3.9083 39 1 -0.9289 -6.1899 -3.7338 40 1 0.4617 -7.8394 -1.2547 41 1 0.5394 -8.2644 -2.9815 42 1 2.0368 -7.9319 -2.0785 43 1 0.3199 -1.8812 -1.5296 44 1 1.5273 -2.5817 -0.4253 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932137021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:57 Heat of formation + Delta-G solvation = 49.762572 kcal Electronic energy + Delta-G solvation = -22378.638125 eV Core-core repulsion = 19331.303496 eV Total energy + Delta-G solvation = -3047.334629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15417 -40.22813 -36.61448 -34.79456 -33.99496 -31.75959 -31.13808 -30.85515 -29.12847 -27.19477 -25.61851 -24.68160 -24.19944 -22.18576 -21.27297 -20.42530 -19.87996 -18.34829 -17.91137 -16.88058 -16.55037 -16.27126 -15.77141 -15.61479 -15.10731 -14.93184 -14.70752 -14.45676 -14.31230 -13.89065 -13.65260 -13.52099 -13.46114 -13.27075 -13.04820 -12.87972 -12.76065 -12.55652 -12.40897 -12.12904 -11.89713 -11.66765 -11.53545 -11.32560 -11.24698 -11.08617 -10.85756 -10.46915 -10.16163 -9.43064 -8.82813 -8.09201 -6.13402 1.01464 1.38776 1.43364 1.49859 1.73568 1.87468 2.47207 3.13065 3.28211 3.62763 3.89068 4.02529 4.10766 4.11169 4.23114 4.33718 4.41865 4.44162 4.48388 4.48968 4.57389 4.66766 4.73469 4.76243 4.85089 4.87692 4.88910 4.97829 5.05668 5.12165 5.17536 5.24753 5.25603 5.33250 5.37659 5.50729 5.58980 5.71432 5.72975 5.90084 6.25913 6.34150 6.50779 6.61961 6.85388 6.99982 7.51715 9.03103 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.005848 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.239900 B = 4787.200855 C = 5791.379990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 H 0.070 0.930 4 C 0.036 3.964 5 C -0.494 4.494 6 H 0.058 0.942 7 C -0.008 4.008 8 N -0.943 5.943 9 Si 0.955 3.045 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.533 5.533 14 C 0.051 3.949 15 C -0.110 4.110 16 C -0.093 4.093 17 C -0.002 4.002 18 H 0.054 0.946 19 C 0.071 3.929 20 C -0.281 4.281 21 C 0.062 3.938 22 N -0.387 5.387 23 C 0.094 3.906 24 N -0.353 5.353 25 C 0.090 3.910 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.043 0.957 29 H -0.011 1.011 30 H -0.012 1.012 31 H 0.257 0.743 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.166 0.834 39 H 0.220 0.780 40 H 0.078 0.922 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 -5.402 -18.463 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.013 4.013 3 H 0.089 0.911 4 C -0.001 4.001 5 C -0.532 4.532 6 H 0.076 0.924 7 C -0.203 4.203 8 N -0.585 5.585 9 Si 0.781 3.219 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.257 5.257 14 C -0.076 4.076 15 C -0.148 4.148 16 C -0.131 4.131 17 C -0.023 4.023 18 H 0.073 0.927 19 C -0.094 4.094 20 C -0.310 4.310 21 C -0.085 4.085 22 N -0.169 5.169 23 C -0.046 4.046 24 N -0.176 5.176 25 C -0.039 4.039 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.184 0.816 39 H 0.237 0.763 40 H 0.096 0.904 41 H 0.145 0.855 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.710 -6.336 -17.522 20.568 hybrid contribution -0.279 0.080 0.495 0.574 sum -8.989 -6.256 -17.027 20.245 Atomic orbital electron populations 1.22369 0.97210 1.01261 1.02201 1.21611 0.92098 0.97155 0.90452 0.91132 1.19040 0.95337 0.94005 0.91708 1.21434 0.93002 1.28275 1.10537 0.92359 1.25867 1.02973 0.95653 0.95812 1.70098 1.37058 1.34064 1.17309 0.85645 0.80636 0.78432 0.77171 1.18900 1.21343 1.20124 1.61837 1.58671 1.02636 1.02558 1.22207 0.98981 0.96619 0.89801 1.21583 0.99925 0.95784 0.97529 1.21504 1.02147 0.94860 0.94612 1.19498 0.98080 0.87992 0.96729 0.92748 1.22431 0.96324 0.93829 0.96853 1.21650 1.00668 0.96958 1.11744 1.23244 0.95078 0.94249 0.95895 1.48899 1.19111 1.08670 1.40217 1.22153 1.04765 0.74215 1.03498 1.77379 1.17593 0.97526 1.25063 1.21686 0.95369 0.90397 0.96404 0.92421 0.91000 0.93750 0.99252 0.99344 0.93449 0.93919 0.90927 0.88388 0.92765 0.90915 0.90030 0.81622 0.76342 0.90363 0.85547 0.90195 0.94183 0.95147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.01 8.40 71.98 0.60 -5.41 16 2 C 0.10 4.05 2.26 44.91 0.10 4.15 16 3 H 0.07 2.95 7.93 -2.39 -0.02 2.94 16 4 C 0.04 2.01 4.40 29.85 0.13 2.14 16 5 C -0.49 -29.54 8.80 25.60 0.23 -29.32 16 6 H 0.06 3.41 7.75 -2.91 -0.02 3.39 16 7 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 8 N -0.94 -61.12 13.29 21.45 0.28 -60.84 16 9 Si 0.96 47.95 29.54 68.60 2.03 49.98 16 10 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 13 N -0.53 -21.11 4.26 -871.11 -3.71 -24.82 16 14 C 0.05 1.51 5.18 86.33 0.45 1.96 16 15 C -0.11 -2.77 6.09 30.65 0.19 -2.59 16 16 C -0.09 -2.36 4.93 30.67 0.15 -2.21 16 17 C 0.00 -0.07 2.81 -11.49 -0.03 -0.10 16 18 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 19 C 0.07 2.41 6.13 43.10 0.26 2.68 16 20 C -0.28 -7.09 9.97 21.99 0.22 -6.87 16 21 C 0.06 1.28 11.49 83.54 0.96 2.24 16 22 N -0.39 -10.24 4.01 -369.56 -1.48 -11.72 16 23 C 0.09 1.55 11.47 127.77 1.47 3.02 16 24 N -0.35 -13.16 12.58 -47.38 -0.60 -13.75 16 25 C 0.09 3.56 3.73 86.32 0.32 3.88 16 26 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.07 2.06 6.93 -2.39 -0.02 2.04 16 28 H 0.04 1.62 6.44 -2.39 -0.02 1.60 16 29 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 30 H -0.01 -0.73 6.39 -2.39 -0.02 -0.74 16 31 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.04 1.11 6.98 -2.39 -0.02 1.10 16 33 H 0.07 2.09 7.98 -2.39 -0.02 2.07 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.74 7.19 -2.39 -0.02 1.73 16 38 H 0.17 3.25 7.37 -2.91 -0.02 3.23 16 39 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.04 1.43 6.57 -2.39 -0.02 1.42 16 44 H 0.03 1.51 6.28 -2.38 -0.01 1.49 16 Total: -1.00 -79.30 343.58 2.99 -76.31 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.96 Total: 11.26 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 5.51 Total: -26.42 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -5.50 Total: -111.13 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -79.30 2.99 -76.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932137021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.077 kcal (2) G-P(sol) polarization free energy of solvation -79.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds