Wall clock time and date at job start Mon Mar 30 2020 02:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47213 * 2 1 4 4 C 1.53007 * 109.47198 * 240.00141 * 2 1 3 5 5 C 1.50700 * 109.47104 * 175.99821 * 4 2 1 6 6 H 1.07991 * 120.00199 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99660 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00298 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00067 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46698 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47370 * 119.99888 * 9 7 5 12 12 H 1.48496 * 109.47277 * 240.00343 * 9 7 5 13 13 N 1.46899 * 109.47261 * 120.00463 * 2 1 3 14 14 C 1.46851 * 110.99926 * 289.38908 * 13 2 1 15 15 C 1.53035 * 109.52306 * 185.83745 * 14 13 2 16 16 C 1.53112 * 109.28045 * 300.81661 * 15 14 13 17 17 C 1.50701 * 109.52541 * 177.55794 * 16 15 14 18 18 C 1.39870 * 125.90166 * 275.13088 * 17 16 15 19 19 C 1.35313 * 107.91722 * 180.21689 * 18 17 16 20 20 N 1.34940 * 107.75096 * 359.61110 * 19 18 17 21 21 C 1.46504 * 126.04080 * 180.14498 * 20 19 18 22 22 N 1.30842 * 125.89626 * 95.10600 * 17 16 15 23 23 C 1.53129 * 109.21107 * 57.62462 * 16 15 14 24 24 C 1.46845 * 111.00121 * 53.59479 * 13 2 1 25 25 H 1.08997 * 109.46718 * 59.99705 * 1 2 3 26 26 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46765 * 299.99884 * 1 2 3 28 28 H 1.09002 * 109.47028 * 295.99871 * 4 2 1 29 29 H 1.08997 * 109.46949 * 55.99530 * 4 2 1 30 30 H 0.96999 * 120.00491 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.46160 * 65.81530 * 14 13 2 32 32 H 1.08997 * 109.46032 * 305.85774 * 14 13 2 33 33 H 1.09006 * 109.50186 * 180.87689 * 15 14 13 34 34 H 1.08993 * 109.53542 * 60.78232 * 15 14 13 35 35 H 1.08998 * 109.52871 * 297.68939 * 16 15 14 36 36 H 1.07999 * 126.03522 * 359.95910 * 18 17 16 37 37 H 1.08007 * 126.12515 * 179.75922 * 19 18 17 38 38 H 1.08996 * 109.46855 * 270.26151 * 21 20 19 39 39 H 1.08999 * 109.46837 * 30.25892 * 21 20 19 40 40 H 1.09001 * 109.47039 * 150.26154 * 21 20 19 41 41 H 1.08999 * 109.49873 * 62.31799 * 23 16 15 42 42 H 1.08995 * 109.50291 * 182.43383 * 23 16 15 43 43 H 1.08998 * 109.46371 * 294.18284 * 24 13 2 44 44 H 1.09007 * 109.46291 * 54.16016 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5438 -0.6359 -1.2999 6 1 4.0819 -0.1194 -0.5189 7 6 4.2325 -1.2174 -2.3432 8 7 3.5772 -1.8460 -3.2945 9 14 6.0965 -1.1123 -2.4056 10 1 6.5894 -0.3567 -1.2260 11 1 6.6703 -2.4819 -2.3918 12 1 6.5117 -0.4142 -3.6488 13 7 2.0197 -0.6926 1.1994 14 6 1.7661 0.1034 2.4071 15 6 2.4157 -0.5774 3.6140 16 6 1.8328 -1.9839 3.7755 17 6 2.5116 -2.6815 4.9260 18 6 3.7194 -3.3838 4.8618 19 6 3.9876 -3.8646 6.0979 20 7 2.9895 -3.4729 6.9172 21 6 2.8804 -3.7722 8.3472 22 7 2.0731 -2.7342 6.1576 23 6 2.0663 -2.7772 2.4866 24 6 1.4281 -2.0318 1.3122 25 1 -0.3632 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7365 -1.7675 -1.2142 29 1 1.6193 -0.2505 -2.1378 30 1 4.0617 -2.2547 -4.0288 31 1 0.6913 0.1835 2.5701 32 1 2.1892 1.0999 2.2808 33 1 2.2140 0.0055 4.5128 34 1 3.4923 -0.6452 3.4584 35 1 0.7628 -1.9146 3.9717 36 1 4.3281 -3.5219 3.9804 37 1 4.8478 -4.4541 6.3791 38 1 2.3396 -4.7088 8.4820 39 1 3.8782 -3.8636 8.7763 40 1 2.3423 -2.9667 8.8469 41 1 3.1372 -2.8807 2.3121 42 1 1.6151 -3.7649 2.5805 43 1 0.3549 -1.9418 1.4804 44 1 1.6060 -2.5863 0.3907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932141060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:28 Heat of formation + Delta-G solvation = 70.876395 kcal Electronic energy + Delta-G solvation = -22003.722137 eV Core-core repulsion = 18957.303072 eV Total energy + Delta-G solvation = -3046.419065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20352 -38.82583 -35.36172 -33.13667 -32.18278 -30.50417 -30.17746 -29.50039 -27.23892 -26.50756 -24.00695 -22.98519 -22.61726 -21.16169 -20.20861 -19.20258 -18.40742 -17.02999 -16.08992 -15.53953 -15.40291 -14.59156 -14.47873 -14.21050 -13.88084 -13.80217 -13.55456 -13.17643 -12.87930 -12.74968 -12.50686 -12.38292 -11.98090 -11.74287 -11.60605 -11.37296 -11.05087 -10.84720 -10.77965 -10.49388 -10.41271 -10.35178 -10.20633 -9.93920 -9.78085 -9.13979 -9.08105 -8.87878 -8.51023 -8.20126 -7.34424 -5.82996 -3.80041 1.88514 2.48033 2.87576 3.42088 3.49555 3.55490 4.37206 4.60821 4.65228 4.75416 4.85422 4.91222 5.13040 5.14440 5.24463 5.53926 5.55825 5.61203 5.71901 5.80081 5.81691 5.88518 5.92615 5.98091 6.04228 6.09631 6.15578 6.24865 6.27576 6.37590 6.51314 6.54217 6.65087 6.74977 6.80327 6.85116 6.99454 7.07790 7.63112 7.77061 7.78239 8.02467 8.12465 8.19763 8.65719 9.26575 9.81413 11.29140 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.004407 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.604030 B = 6352.215811 C = 7296.307716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.509 5.509 14 C 0.055 3.945 15 C -0.100 4.100 16 C -0.006 4.006 17 C 0.093 3.907 18 C -0.259 4.259 19 C 0.046 3.954 20 N -0.386 5.386 21 C 0.105 3.895 22 N -0.303 5.303 23 C -0.104 4.104 24 C 0.057 3.943 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.256 0.744 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.171 0.829 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.023 0.977 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 -3.105 19.976 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.232 5.232 14 C -0.074 4.074 15 C -0.139 4.139 16 C -0.027 4.027 17 C -0.074 4.074 18 C -0.288 4.288 19 C -0.099 4.099 20 N -0.168 5.168 21 C -0.037 4.037 22 N -0.125 5.125 23 C -0.142 4.142 24 C -0.071 4.071 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.168 0.832 37 H 0.188 0.812 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.845 -2.956 20.780 21.182 hybrid contribution 0.895 -0.306 -0.429 1.039 sum -1.950 -3.263 20.351 20.703 Atomic orbital electron populations 1.22525 0.99893 1.01318 1.00552 1.21907 0.89961 0.98287 0.91962 0.91364 1.19204 0.96375 0.95339 0.89827 1.21222 0.91680 1.32974 1.06528 0.92024 1.25001 0.97896 0.96029 0.96027 1.69974 1.34992 1.37587 1.12088 0.86598 0.86668 0.77486 0.77611 1.19763 1.21384 1.21526 1.62036 1.58375 1.01727 1.01104 1.22056 0.97323 0.97262 0.90712 1.21549 1.01498 0.93749 0.97099 1.19655 0.98572 0.94562 0.89912 1.22417 0.94692 0.97392 0.92888 1.21500 1.00648 1.08409 0.98263 1.22503 0.94709 1.01491 0.91237 1.48465 1.17672 1.42016 1.08653 1.21767 1.03398 1.02286 0.76230 1.77303 1.14559 1.16621 1.04031 1.21612 1.02834 0.97386 0.92365 1.22073 0.94902 0.91122 0.98959 0.92685 0.92832 0.94209 0.96273 0.96470 0.93471 0.95783 0.91157 0.92319 0.90686 0.90632 0.83193 0.81200 0.91124 0.89769 0.89567 0.90292 0.92086 0.95871 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.44 37.16 0.31 -2.89 16 2 C 0.09 1.77 2.26 -67.71 -0.15 1.61 16 3 H 0.07 1.42 7.98 -51.93 -0.41 1.00 16 4 C 0.03 0.75 4.37 -27.88 -0.12 0.63 16 5 C -0.49 -13.56 8.81 -34.44 -0.30 -13.86 16 6 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.31 13.29 55.43 0.74 -26.57 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 N -0.51 -9.61 4.29 -226.68 -0.97 -10.59 16 14 C 0.05 0.88 5.14 -3.83 -0.02 0.86 16 15 C -0.10 -1.48 5.36 -26.66 -0.14 -1.62 16 16 C -0.01 -0.09 2.71 -91.65 -0.25 -0.34 16 17 C 0.09 1.36 6.14 -82.40 -0.51 0.85 16 18 C -0.26 -3.45 9.97 -40.01 -0.40 -3.84 16 19 C 0.05 0.50 11.49 -17.23 -0.20 0.31 16 20 N -0.39 -4.53 4.01 -68.16 -0.27 -4.80 16 21 C 0.10 0.72 11.47 59.85 0.69 1.40 16 22 N -0.30 -4.52 12.58 33.67 0.42 -4.09 16 23 C -0.10 -1.60 5.02 -26.64 -0.13 -1.74 16 24 C 0.06 1.01 4.53 -3.83 -0.02 1.00 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.93 6.46 -51.93 -0.34 0.59 16 27 H 0.04 0.62 6.84 -51.93 -0.35 0.26 16 28 H 0.02 0.51 6.28 -51.93 -0.33 0.19 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.02 0.37 6.89 -51.93 -0.36 0.01 16 32 H 0.07 1.10 8.01 -51.93 -0.42 0.69 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.15 1.91 7.36 -52.49 -0.39 1.53 16 37 H 0.17 1.21 8.06 -52.48 -0.42 0.78 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.30 7.19 -51.93 -0.37 0.93 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.02 0.39 6.57 -51.93 -0.34 0.05 16 44 H 0.09 1.81 6.17 -51.93 -0.32 1.49 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -32.48 343.32 -8.67 -41.15 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.39 Total: -1.01 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.34 Total: -16.32 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.09 Total: -46.06 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.48 -8.67 -41.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932141060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.022 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds